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PDB: 94 results

2R0O
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Crystal structure of the actin-binding domain of human alpha-actinin-4 mutant(K255E)
Descriptor: Alpha-actinin-4, GLYCEROL
Authors:Lee, S.H, Dominguez, R.
Deposit date:2007-08-20
Release date:2008-02-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the actin-binding domain of alpha-actinin-4 Lys255Glu mutant implicated in focal segmental glomerulosclerosis.
J.Mol.Biol., 376, 2008
7W1G
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BU of 7w1g by Molmil
Crystal structure of YfiH with C107A mutation in complex with UDP-MurNAc-L-Serine
Descriptor: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid, (2S)-2-[[(2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-oxidanyl-oxan-4-yl]oxypropanoyl]amino]-3-oxidanyl-propanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Lee, S.H, Hsieh, K.Y, Lee, M.S, Chang, C.I.
Deposit date:2021-11-19
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural Basis for the Peptidoglycan-Editing Activity of YfiH.
Mbio, 13, 2021
2D1L
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BU of 2d1l by Molmil
Structure of F-actin binding domain IMD of MIM (Missing In Metastasis)
Descriptor: Metastasis suppressor protein 1
Authors:Lee, S.H, Kerff, F, Chereau, D, Ferron, F, Dominguez, R.
Deposit date:2005-08-27
Release date:2006-09-12
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for the actin-binding function of missing-in-metastasis
Structure, 15, 2007
8HKA
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BU of 8hka by Molmil
TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis
Descriptor: Periplasmic terephthalate binding protein (TBP), terephthalic acid
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-11-25
Release date:2023-06-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis.
Int.J.Biol.Macromol., 243, 2023
8HKB
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BU of 8hkb by Molmil
TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis mutant K184D
Descriptor: Periplasmic terephthalate binding protein (TBP), terephthalic acid
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-11-25
Release date:2023-06-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis.
Int.J.Biol.Macromol., 243, 2023
8HK9
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BU of 8hk9 by Molmil
Apo-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis
Descriptor: GLYCEROL, Periplasmic terephthalate binding protein (TBP)
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-11-25
Release date:2023-06-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis.
Int.J.Biol.Macromol., 243, 2023
8H5K
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BU of 8h5k by Molmil
Crystal structure of PETase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/R224E/N233C/S242T/N246D/S282C mutant from Ideonella sakaiensis
Descriptor: Poly(ethylene terephthalate) hydrolase
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-10-13
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
To Be Published
8H5O
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BU of 8h5o by Molmil
Crystal structure of PETase S121E/P181V/D186H/N233C/S242T/N246D/S282C mutant from Ideonella sakaiensis
Descriptor: Poly(ethylene terephthalate) hydrolase
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-10-13
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
To Be Published
8H5J
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BU of 8h5j by Molmil
Crystal structure of PETase S121E/A180V/P181V/D186H/N233C/S242T/N246D/S282C mutant from Ideonella sakaiensis
Descriptor: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-10-13
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
To Be Published
8H5L
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BU of 8h5l by Molmil
Crystal structure of PETase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224E/N233C/S242T/N246D/N275C/S282C/F284C mutant from Ideonella sakaiensis
Descriptor: IODIDE ION, POTASSIUM ION, Poly(ethylene terephthalate) hydrolase
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-10-13
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
To Be Published
6LRP
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BU of 6lrp by Molmil
Crystal structure of isocitrate lyase (Caur_3889) from Chloroflexus aurantiacus in complex with manganese ion
Descriptor: 3,6,9,12,15-PENTAOXAHEPTADECANE, GLYCEROL, Isocitrate lyase
Authors:Lee, S.H, Kim, K.J.
Deposit date:2020-01-16
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural studies reveal the molecular mechanism of isocitrate lyase from Chloroflexus aurantiacus
To Be Published
6LRT
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BU of 6lrt by Molmil
Crystal structure of isocitrate lyase (Caur_3889) from Chloroflexus aurantiacus in complex with isocitrate and manganese ion
Descriptor: GLYCEROL, ISOCITRIC ACID, Isocitrate lyase, ...
Authors:Lee, S.H, Kim, K.J.
Deposit date:2020-01-16
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural studies reveal the molecular mechanism of isocitrate lyase from Chloroflexus aurantiacus
To Be Published
8H5M
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BU of 8h5m by Molmil
Crystal structure of PETase S121E/D186H/N233C/S242T/N246D/S282C mutant from Ideonella sakaiensis
Descriptor: MAGNESIUM ION, Poly(ethylene terephthalate) hydrolase
Authors:Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:2022-10-13
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
To Be Published
2Q97
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BU of 2q97 by Molmil
Complex of mammalian actin with toxofilin from toxoplasma gondii
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Lee, S.H, Dominguez, R.
Deposit date:2007-06-12
Release date:2007-10-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Toxofilin from Toxoplasma gondii forms a ternary complex with an antiparallel actin dimer
Proc.Natl.Acad.Sci.Usa, 104, 2007
3E5H
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BU of 3e5h by Molmil
Crystal Structure of Rab28 GTPase in the Active (GppNHp-bound) Form
Descriptor: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Lee, S.H, Baek, K, Li, Y, Dominguez, R.
Deposit date:2008-08-13
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Large nucleotide-dependent conformational change in Rab28.
Febs Lett., 582, 2008
2HXS
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BU of 2hxs by Molmil
Crystal Structure of Rab28A GTPase in the Inactive (GDP-3'P-Bound) Form
Descriptor: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-28
Authors:Lee, S.H, Li, Y, Dominguez, R.
Deposit date:2006-08-03
Release date:2007-08-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The Crystal Structure of Rab28 GTPase in Active and Inactive Forms
To be Published
4W5J
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BU of 4w5j by Molmil
New structural conformations of adenylate kinase from Streptococcus pneumoniae D39 with Ap5A
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION
Authors:Thach, T.T, Lee, S.H.
Deposit date:2014-08-18
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:New crystal structures of adenylate kinase from Streptococcus pneumoniae D39 in two conformations.
Acta Crystallogr.,Sect.F, 70, 2014
4W5H
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BU of 4w5h by Molmil
New structural conformations of adenylate kinase from Streptococcus pneumoniae D39
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Adenylate kinase
Authors:Thach, T.T, Lee, S.H.
Deposit date:2014-08-18
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:New crystal structures of adenylate kinase from Streptococcus pneumoniae D39 in two conformations.
Acta Crystallogr.,Sect.F, 70, 2014
7YPJ
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BU of 7ypj by Molmil
Spiral pentamer of the substrate-free Lon protease with a S678A mutation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YPI
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BU of 7ypi by Molmil
Spiral hexamer of the substrate-free Lon protease with a Y224S mutation
Descriptor: Lon protease, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YPH
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BU of 7yph by Molmil
Open-spiral pentamer of the substrate-free Lon protease with a Y224S mutation
Descriptor: Lon protease, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YPK
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BU of 7ypk by Molmil
Close-ring hexamer of the substrate-bound Lon protease with an S678A mutation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease, alpha-S1-casein
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7BXA
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BU of 7bxa by Molmil
Crystal structure of PD-1 in complex with tislelizumab Fab
Descriptor: Programmed cell death protein 1, heavy chain, light chain
Authors:Heo, Y.S, Lee, S.H, Lim, H, Lee, H.T, Kim, Y.J, Park, E.B.
Deposit date:2020-04-18
Release date:2020-06-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Crystal structure of PD-1 in complex with an antibody-drug tislelizumab used in tumor immune checkpoint therapy.
Biochem.Biophys.Res.Commun., 527, 2020
7CDH
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BU of 7cdh by Molmil
Crystal structure of Betaaspartyl dipeptidase from thermophilic keratin degrading Fervidobacterium islandicum-AW-1
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Isoaspartyl dipeptidase, ...
Authors:Dhanasingh, I, La, J.W, Lee, D.W, Lee, S.H.
Deposit date:2020-06-19
Release date:2020-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional Characterization of Primordial Protein Repair Enzyme M38 Metallo-Peptidase From Fervidobacterium islandicum AW-1.
Front Mol Biosci, 7, 2020
7CF6
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BU of 7cf6 by Molmil
Crystal structure of Beta-aspartyl dipeptidase from thermophilic keratin degrading Fervidobacterium islandicum AW-1 in complex with beta-Asp-Leu dipeptide
Descriptor: (2S)-2-[[(3S)-3-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-4-methyl-pentanoic acid, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Dhanasingh, I, La, J.W, Lee, D.W, Lee, S.H.
Deposit date:2020-06-24
Release date:2020-12-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Functional Characterization of Primordial Protein Repair Enzyme M38 Metallo-Peptidase From Fervidobacterium islandicum AW-1.
Front Mol Biosci, 7, 2020

 

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