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PDB: 499 件
7UHO
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BU of 7uho by Molmil
Time-Resolved Structure of Metallo Beta-Lactamase L1 in a Complex with Cleaved Moxalactam (500 ms Snapshot)
分子名称: (2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid, Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase), ZINC ION
著者Wilamowski, M, Kim, Y, Sherrell, D.A, Lavens, A, Henning, R, Maltseva, N, Endres, M, Babnigg, G, Srajer, V, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-03-27
公開日2022-07-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Time-resolved beta-lactam cleavage by L1 metallo-beta-lactamase.
Nat Commun, 13, 2022
1NG9
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BU of 1ng9 by Molmil
E.coli MutS R697A: an ATPase-asymmetry mutant
分子名称: 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3', ADENOSINE-5'-DIPHOSPHATE, ...
著者Lamers, M.H, Winterwerp, H.H.K, Sixma, T.K.
登録日2002-12-17
公開日2003-02-11
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The alternating ATPase domains of MutS control DNA mismatch repair
Embo J., 22, 2003
7JHE
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BU of 7jhe by Molmil
Room Temperature Structure of SARS-CoV-2 Nsp10/Nsp16 Methyltransferase in a Complex with 2'-O-methylated m7GpppA Cap-1 and SAH Determined by Fixed-Target Serial Crystallography
分子名称: 2'-O-methyltransferase, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE, ...
著者Wilamowski, M, Sherrell, D.A, Minasov, G, Kim, Y, Shuvalova, L, Lavens, A, Chard, R, Rosas-Lemus, M, Maltseva, N, Jedrzejczak, R, Michalska, K, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-07-20
公開日2020-08-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献2'-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography.
Proc.Natl.Acad.Sci.USA, 118, 2021
4DG4
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BU of 4dg4 by Molmil
Human mesotrypsin-S39Y complexed with bovine pancreatic trypsin inhibitor (BPTI)
分子名称: CALCIUM ION, PRSS3 protein, Pancreatic trypsin inhibitor, ...
著者Salameh, M.A, Soares, A.S, Radisky, E.S.
登録日2012-01-24
公開日2012-09-12
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Presence versus absence of hydrogen bond donor Tyr-39 influences interactions of cationic trypsin and mesotrypsin with protein protease inhibitors.
Protein Sci., 21, 2012
8OE8
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BU of 8oe8 by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for an hour
分子名称: COPPER (II) ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), HYDROGEN PEROXIDE, ...
著者Lambert, M.C, Hall, J.P.
登録日2023-03-10
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published
8OE7
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BU of 8oe7 by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for 5 minutes
分子名称: COPPER (II) ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), HYDROGEN PEROXIDE
著者Lambert, M.C, Hall, J.P.
登録日2023-03-10
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published
8OEA
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BU of 8oea by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride, in preparation to hydrogen peroxide soaking, first collection at room temperature
分子名称: COPPER (II) ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
著者Lambert, M.C, Hall, J.P.
登録日2023-03-10
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published
3AUH
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BU of 3auh by Molmil
A simplified BPTI variant with poly Arg amino acid tag (C3R) at the C-terminus
分子名称: Bovine pancreatic trypsin inhibitor, SULFATE ION
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
3AUE
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BU of 3aue by Molmil
A simplified BPTI variant with poly His amino acid tag (C5H) at the C-terminus
分子名称: Bovine pancreatic trypsin inhibitor, SULFATE ION
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
7VOI
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BU of 7voi by Molmil
Structure of the human CNOT1(MIF4G)-CNOT6L-CNOT7 complex
分子名称: CCR4-NOT transcription complex subunit 1, CCR4-NOT transcription complex subunit 6-like, CCR4-NOT transcription complex subunit 7
著者Bartlam, M, Zhang, Q.
登録日2021-10-13
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (4.38 Å)
主引用文献Structure of the human Ccr4-Not nuclease module using X-ray crystallography and electron paramagnetic resonance spectroscopy distance measurements.
Protein Sci., 31, 2022
8BAG
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BU of 8bag by Molmil
Copper(II) bound to a non-canonical quadruplex containing the damaged base 8-oxoguanine
分子名称: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3')
著者Lambert, M.C, Hall, J.P.
登録日2022-10-11
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Oxidative damage induce copper(II)-DNA binding
To Be Published
8BAE
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BU of 8bae by Molmil
Copper(II) bound to a non-canonical quadruplex
分子名称: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3')
著者Lambert, M.C, Hall, J.P.
登録日2022-10-11
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Oxidative damage induce copper(II)-DNA binding
To Be Published
8BAF
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BU of 8baf by Molmil
Non-canonical quadruplex containing the oxidation product 8-oxoguanine
分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3')
著者Lambert, M.C, Hall, J.P.
登録日2022-10-11
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Oxidative damage induce copper(II)-DNA binding
To Be Published
7OTO
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BU of 7oto by Molmil
The structure of MutS bound to two molecules of AMPPNP
分子名称: DNA mismatch repair protein MutS, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
登録日2021-06-10
公開日2022-01-12
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OU4
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BU of 7ou4 by Molmil
The structure of MutS bound to one molecule of ATP and one molecule of ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein MutS, ...
著者Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
登録日2021-06-11
公開日2022-01-12
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OU0
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BU of 7ou0 by Molmil
The structure of MutS bound to two molecules of ADP-Vanadate
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS, MAGNESIUM ION, ...
著者Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
登録日2021-06-10
公開日2022-01-12
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OU2
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BU of 7ou2 by Molmil
The structure of MutS bound to two molecules of ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS
著者Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
登録日2021-06-11
公開日2022-01-12
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
3PEQ
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BU of 3peq by Molmil
PPARd complexed with a phenoxyacetic acid partial agonist
分子名称: IODIDE ION, Peroxisome proliferator-activated receptor delta, [(4-{butyl[2-methyl-4'-(methylsulfanyl)biphenyl-3-yl]sulfamoyl}naphthalen-1-yl)oxy]acetic acid, ...
著者Lambert, M.H, Evans, K.A, Shearer, B.G, Wisnoski, D.D, Shi, D, Jin, J, Rivero, R.A, Sparks, S.M, Winegar, D.A, Billin, A.N, Britt, C, Way, J.M, Leesnitzer, L.M, Merrihew, R.V.
登録日2010-10-27
公開日2011-10-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Phenoxyacetic acid PPARd partial agonists for the treatment of type 2 diabetes: synthesis, optimization, and in vivo efficacy
Bioorg.Med.Chem.Lett., 21, 2011
3AUG
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BU of 3aug by Molmil
A simplified BPTI variant with poly Pro amino acid tag (C5P) at the C-terminus
分子名称: Bovine pancreatic trypsin inhibitor, SULFATE ION
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.398 Å)
主引用文献Effect of amino acid mutations of protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
3AUD
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BU of 3aud by Molmil
Simplified BPTI variant with poly Asn amino acid tag (C5N) at the C-terminus
分子名称: Bovine pancreatic trypsin inhibitor
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.943 Å)
主引用文献Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
3AUB
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BU of 3aub by Molmil
A simplified BPTI variant stabilized by the A14G and A38V substitutions
分子名称: Bovine Pancreatic trypsin inhibitor
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Effect of amino acid mutations of protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
3AUI
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BU of 3aui by Molmil
A simplified BPTI variant with poly Glu amino acid tag (C3E) at the C-terminus
分子名称: Bovine pancreatic trypsin inhibitor, SULFATE ION
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
3AUC
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BU of 3auc by Molmil
A simplified BPTI variant with poly SER (C5S) amino acid tag at the c-terminus
分子名称: Bovine pancreatic trypsin inhibitor, SULFATE ION
著者Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y.
登録日2011-02-03
公開日2012-02-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
8OE3
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BU of 8oe3 by Molmil
Crystal structure of the non-canonical quadruplex d(GCATGCT) before soaking
分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3')
著者Lambert, M.C, Hall, J.P.
登録日2023-03-10
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Oxidative damage induce copper(II)-DNA binding
To Be Published
8OEB
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BU of 8oeb by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for 30 minutes, second collection at room temperature
分子名称: COPPER (II) ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE
著者Lambert, M.C, Hall, J.P.
登録日2023-03-10
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published

225681

件を2024-10-02に公開中

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