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PDB: 309 results

4OQW
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BU of 4oqw by Molmil
Crystal structure of mCardinal far-red fluorescent protein
Descriptor: Fluorescent protein FP480
Authors:Burg, J.S, Chu, J, Lam, A.J, Lin, M.Z, Garcia, K.C.
Deposit date:2014-02-10
Release date:2014-03-12
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein.
Nat.Methods, 11, 2014
6C4T
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BU of 6c4t by Molmil
Staphylopine dehydrogenase (SaODH) - NADP+ bound
Descriptor: GLYCEROL, Staphylopine dehydrogenase, [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Authors:McFarlane, J.S, Davis, C.L, Lamb, A.L.
Deposit date:2018-01-12
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Staphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
J. Biol. Chem., 293, 2018
8AW1
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c-MET Y1235D mutant in complex with Tepotinib
Descriptor: 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile, Hepatocyte growth factor receptor
Authors:Graedler, U, Lammens, A.
Deposit date:2022-08-29
Release date:2023-09-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Biophysical and structural characterization of the impacts of MET phosphorylation on tepotinib binding.
J.Biol.Chem., 299, 2023
6C4L
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BU of 6c4l by Molmil
Yersinopine dehydrogenase (YpODH) - Apo
Descriptor: Yersinopine dehydrogenase
Authors:McFarlane, J.S, Davis, C.L, Lamb, A.L.
Deposit date:2018-01-12
Release date:2018-04-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Staphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
J. Biol. Chem., 293, 2018
3ZFW
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BU of 3zfw by Molmil
Crystal structure of the TPR domain of kinesin light chain 2 in complex with a tryptophan-acidic cargo peptide
Descriptor: KINESIN LIGHT CHAIN 2, PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
Authors:Pernigo, S, Lamprecht, A, Steiner, R.A, Dodding, M.P.
Deposit date:2012-12-12
Release date:2013-04-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for Kinesin-1:Cargo Recognition.
Science, 340, 2013
8AU3
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BU of 8au3 by Molmil
c-MET Y1234E,Y1235E mutant in complex with Tepotinib
Descriptor: 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile, DI(HYDROXYETHYL)ETHER, Hepatocyte growth factor receptor, ...
Authors:Graedler, U, Lammens, A.
Deposit date:2022-08-25
Release date:2023-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Biophysical and structural characterization of the impacts of MET phosphorylation on tepotinib binding.
J.Biol.Chem., 299, 2023
6PBN
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BU of 6pbn by Molmil
Pseudopaline Dehydrogenase with (R)-Pseudopaline Soaked 1 hour
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, N-[(3S)-3-amino-3-carboxypropyl]-L-histidine, ...
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
8AU5
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BU of 8au5 by Molmil
c-MET F1200I mutant in complex with Tepotinib
Descriptor: 1,2-ETHANEDIOL, 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile, CHLORIDE ION, ...
Authors:Graedler, U, Lammens, A.
Deposit date:2022-08-25
Release date:2023-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Biophysical and structural characterization of the impacts of MET phosphorylation on tepotinib binding.
J.Biol.Chem., 299, 2023
6PBM
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BU of 6pbm by Molmil
Pseudopaline Dehydrogenase with NADP+ bound
Descriptor: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Pseudopaline Dehydrogenase
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
2WBA
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BU of 2wba by Molmil
Properties of Trypanothione Reductase From T. brucei
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Jones, D, Ariza, A, Chow, W.H.A, Oza, S.L, Fairlamb, A.H.
Deposit date:2009-02-24
Release date:2009-11-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Comparative Structural, Kinetic and Inhibitor Studies of Trypanosoma Brucei Trypanothione Reductase with T. Cruzi.
Mol.Biochem.Parasitol., 169, 2010
7TZ4
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BU of 7tz4 by Molmil
Salicylate Adenylate PchD from Pseudomonas aeruginosa containing 4-cyanosalicyl-AMS
Descriptor: 5'-O-[(4-cyano-2-hydroxybenzoyl)sulfamoyl]adenosine, Pyochelin biosynthesis salicyl-AMP ligase PchD
Authors:Shelton, C.L, Meneely, K.M, Lamb, A.L.
Deposit date:2022-02-15
Release date:2022-05-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Rational inhibitor design for Pseudomonas aeruginosa salicylate adenylation enzyme PchD.
J.Biol.Inorg.Chem., 27, 2022
7TYB
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BU of 7tyb by Molmil
Salicylate Adenylate PchD from Pseudomonas aeruginosa containing salicyl-AMS
Descriptor: 5'-O-[(2-hydroxybenzoyl)sulfamoyl]adenosine, Pyochelin biosynthesis protein PchD
Authors:Meneely, K.M, Shelton, C.L, Lamb, A.L.
Deposit date:2022-02-11
Release date:2022-05-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Rational inhibitor design for Pseudomonas aeruginosa salicylate adenylation enzyme PchD.
J.Biol.Inorg.Chem., 27, 2022
4M2A
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BU of 4m2a by Molmil
Crystal structure of the udp-glucose pyrophosphorylase from Leishmania major in the post-reactive state
Descriptor: MAGNESIUM ION, SULFATE ION, UDP-glucose pyrophosphorylase, ...
Authors:Fuehring, J, Routier, F.H, Lamerz, A.-C, Baruch, P, Gerardy-Schahn, R, Fedorov, R.
Deposit date:2013-08-05
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Catalytic Mechanism and Allosteric Regulation of Udp-Glucose Pyrophosphorylase from Leishmania Major
ACS CATALYSIS, 3, 2013
2VPM
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BU of 2vpm by Molmil
Trypanothione synthetase
Descriptor: BROMIDE ION, CHLORIDE ION, TRYPANOTHIONE SYNTHETASE
Authors:Fyfe, P.K, Oza, S.L, Fairlamb, A.H, Hunter, W.N.
Deposit date:2008-03-03
Release date:2008-05-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Leishmania Trypanothione Synthetase-Amidase Structure Reveals a Basis for Regulation of Conflicting Synthetic and Hydrolytic Activities.
J.Biol.Chem., 283, 2008
2VUP
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BU of 2vup by Molmil
Crystal structure of a type II tryparedoxin-dependant peroxidase from Trypanosoma brucei
Descriptor: GLUTATHIONE PEROXIDASE-LIKE PROTEIN
Authors:Alphey, M.S, Konig, J, Fairlamb, A.H.
Deposit date:2008-05-28
Release date:2008-06-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Mechanistic Insights Into Type II Trypanosomatid Tryparedoxin-Dependent Peroxidases.
Biochem.J., 414, 2008
2VPS
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BU of 2vps by Molmil
Structure Of The Bifunctional Leishmania Major Trypanothione Synthetase-Amidase
Descriptor: BROMIDE ION, CHLORIDE ION, TRYPANOTHIONE SYNTHETASE
Authors:Fyfe, P.K, Oza, S.L, Fairlamb, A.H, Hunter, W.N.
Deposit date:2008-03-04
Release date:2008-05-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Leishmania Trypanothione Synthetase-Amidase Structure Reveals a Basis for Regulation of Conflicting Synthetic and Hydrolytic Activities.
J.Biol.Chem., 283, 2008
4M2B
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BU of 4m2b by Molmil
Crystal structure of L281D mutant of udp-glucose pyrophosphorylase from leishmania major in complex with udp-glc
Descriptor: UDP-glucose pyrophosphorylase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Fuehring, J, Routier, F.H, Lamerz, A.-C, Baruch, P, Gerardy-Schahn, R, Fedorov, R.
Deposit date:2013-08-05
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Catalytic Mechanism and Allosteric Regulation of Udp-Glucose Pyrophosphorylase from Leishmania Major
ACS Catalysis, 36329, 2013
2IZ5
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BU of 2iz5 by Molmil
FUNCTION AND STRUCTURE OF THE MOLYBDENUM COFACTOR CARRIER PROTEIN MCP FROM CHLAMYDOMONAS REINHARDTII
Descriptor: MOCO CARRIER PROTEIN
Authors:Fischer, K, Llamas, A, Tejada-Jimenez, M, Schrader, N, Kuper, J, Mendel, R.R, Fernandez, E, Schwarz, G.
Deposit date:2006-07-25
Release date:2006-07-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Function and Structure of the Molybdenum Cofactor Carrier Protein from Chlamydomonas Reinhardtii.
J.Biol.Chem., 281, 2006
4UWJ
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BU of 4uwj by Molmil
Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a capped pyrazole sulphonamide ligand
Descriptor: 2,6-dichloro-N-(difluoromethyl)-4-[3-(piperidin-4-yl)propyl]-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, TETRADECANOYL-COA
Authors:Robinson, D.A, Brand, S, Norcross, N.R, Thompson, S, Harrison, J.R, Smith, V.C, Torrie, L.S, McElroy, S.P, Hallyburton, I, Norval, S, Stojanovski, L, Simeons, F.R.C, Frearson, J.A, Brenk, R, Fairlamb, A.H, Ferguson, M.A.J, Wyatt, P.G, Gilbert, I.H, Read, K.D.
Deposit date:2014-08-12
Release date:2014-12-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Lead optimization of a pyrazole sulfonamide series of Trypanosoma brucei N-myristoyltransferase inhibitors: identification and evaluation of CNS penetrant compounds as potential treatments for stage 2 human African trypanosomiasis.
J. Med. Chem., 57, 2014
4UWI
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BU of 4uwi by Molmil
Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a pyrazole sulphonamide ligand
Descriptor: 2,6-dichloro-4-[3-(4-methylpiperazin-1-yl)propyl]-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, TETRADECANOYL-COA
Authors:Robinson, D.A, Brand, S, Norcross, N.R, Thompson, S, Harrison, J.R, Smith, V.C, Torrie, L.S, McElroy, S.P, Hallyburton, I, Norval, S, Stojanovski, L, Simeons, F.R.C, Frearson, J.A, Brenk, R, Fairlamb, A.H, Ferguson, M.A.J, Wyatt, P.G, Gilbert, I.H, Read, K.D.
Deposit date:2014-08-12
Release date:2014-12-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Lead optimization of a pyrazole sulfonamide series of Trypanosoma brucei N-myristoyltransferase inhibitors: identification and evaluation of CNS penetrant compounds as potential treatments for stage 2 human African trypanosomiasis.
J. Med. Chem., 57, 2014
1DKW
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BU of 1dkw by Molmil
CRYSTAL STRUCTURE OF TRIOSE-PHOSPHATE ISOMERASE WITH MODIFIED SUBSTRATE BINDING SITE
Descriptor: TERTIARY-BUTYL ALCOHOL, TRIOSEPHOSPHATE ISOMERASE
Authors:Norledge, B.V, Lambeir, A.M, Abagyan, R.A, Rottman, A, Fernandez, A.M, Filimonov, V.V, Peter, M.G, Wierenga, R.K.
Deposit date:1999-12-08
Release date:2000-11-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Modeling, mutagenesis, and structural studies on the fully conserved phosphate-binding loop (loop 8) of triosephosphate isomerase: toward a new substrate specificity.
Proteins, 42, 2001
5IHX
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BU of 5ihx by Molmil
Crystal Structure of a C-terminally truncated Aspergillus nidulans mitochondrial tyrosyl-tRNA synthetase
Descriptor: TYROSINE, Tyrosine--tRNA ligase, mitochondrial
Authors:Lamech, L.T, Lambowitz, A.M.
Deposit date:2016-02-29
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Crystal Structure of a C-terminally truncated Aspergillus nidulans mitochondrial tyrosyl-tRNA synthetase
To be published
6NN5
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BU of 6nn5 by Molmil
The structure of human liver pyruvate kinase, hLPYK-W527H
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Pyruvate kinase PKLR
Authors:McFarlane, J.S, Ronnebaum, T.A, Meneely, K.M, Fenton, A.W, Lamb, A.L.
Deposit date:2019-01-14
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.256 Å)
Cite:Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-pi bond.
Acta Crystallogr.,Sect.F, 75, 2019
6NN8
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The structure of human liver pyruvate kinase, hLPYK-S531E
Descriptor: 1,2-ETHANEDIOL, Pyruvate kinase PKLR
Authors:McFarlane, J.S, Ronnebaum, T.A, Meneely, K.M, Fenton, A.W, Lamb, A.L.
Deposit date:2019-01-14
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.416 Å)
Cite:Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-pi bond.
Acta Crystallogr.,Sect.F, 75, 2019
6NN4
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The structure of human liver pyruvate kinase, hLPYK-D499N, in complex with Fru-1,6-BP
Descriptor: 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, PHOSPHOENOLPYRUVATE, ...
Authors:McFarlane, J.S, Ronnebaum, T.A, Meneely, K.M, Fenton, A.W, Lamb, A.L.
Deposit date:2019-01-14
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-pi bond.
Acta Crystallogr.,Sect.F, 75, 2019

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