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PDB: 178 results

5MTD
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BU of 5mtd by Molmil
Crystal structure of PDF from the Vibrio parahaemolyticus bacteriophage VP16T - crystal form II
Descriptor: NICKEL (II) ION, Putative uncharacterized protein orf60T, TRIETHYLENE GLYCOL, ...
Authors:Fieulaine, S, Grzela, R, Giglione, C, Meinnel, T.
Deposit date:2017-01-09
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The C-terminal residue of phage Vp16 PDF, the smallest peptide deformylase, acts as an offset element locking the active conformation.
Sci Rep, 7, 2017
2UYW
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BU of 2uyw by Molmil
Crystal structure of Xenavidin
Descriptor: BIOTIN, FORMIC ACID, XENAVIDIN
Authors:Helppolainen, S.H, Maatta, J.A.E, Airenne, T.T, Johnson, M.S, Kulomaa, M.S, Nordlund, H.R.
Deposit date:2007-04-20
Release date:2008-05-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Functional Characteristics of Xenavidin, the First Frog Avidin from Xenopus Tropicalis.
Bmc Struct.Biol., 9, 2009
3EKK
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BU of 3ekk by Molmil
Insulin receptor kinase complexed with an inhibitor
Descriptor: 2-[(2-{[1-(N,N-dimethylglycyl)-5-methoxy-1H-indol-6-yl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]-6-fluoro-N-methylbenzamide, Insulin receptor
Authors:Chamberlain, S, Atkins, C, Deanda, F, Dumble, M, Gerding, R, Groy, A, Korenchuk, S, Kumar, R, Lei, H, Mook, R, Moorthy, G, Redman, A, Rowland, J, Sabbatini, P, Shewchuk, L.
Deposit date:2008-09-19
Release date:2008-12-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidines: Potent inhibitors of the IGF-1R receptor tyrosine kinase.
Bioorg.Med.Chem.Lett., 19, 2009
3ELJ
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BU of 3elj by Molmil
Jnk1 complexed with a bis-anilino-pyrrolopyrimidine inhibitor.
Descriptor: 2-fluoro-6-{[2-({2-methoxy-4-[(methylsulfonyl)methyl]phenyl}amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino}benzamide, Mitogen-activated protein kinase 8
Authors:Chamberlain, S, Atkins, C, Deanda, F, Dumble, M, Gerding, R, Groy, A, Korenchuk, S, Kumar, R, Lei, H, Mook, R, Moorthy, G, Redman, A, Rowland, J, Shewchuk, L, Vicentini, G, Mosley, J.
Deposit date:2008-09-22
Release date:2008-12-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Optimization of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidine IGF-1R tyrosine kinase inhibitors towards JNK selectivity.
Bioorg.Med.Chem.Lett., 19, 2009
3EKN
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BU of 3ekn by Molmil
Insulin receptor kinase complexed with an inhibitor
Descriptor: 2-fluoro-6-{[2-({2-methoxy-4-[4-(1-methylethyl)piperazin-1-yl]phenyl}amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino}benzamide, Insulin receptor
Authors:Chamberlain, S, Atkins, C, Deanda, F, Dumble, M, Gerding, R, Groy, A, Korenchuk, S, Kumar, R, Lei, H, Mook, R, Moorthy, G, Redman, A, Rowland, J, Shewchuk, L.
Deposit date:2008-09-19
Release date:2008-12-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Optimization of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidine IGF-1R tyrosine kinase inhibitors towards JNK selectivity.
Bioorg.Med.Chem.Lett., 19, 2009
1JB1
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BU of 1jb1 by Molmil
Lactobacillus casei HprK/P Bound to Phosphate
Descriptor: HPRK PROTEIN, PHOSPHATE ION
Authors:Fieulaine, S, Morera, S, Poncet, S, Monedero, V, Gueguen-Chaignon, V, Galinier, A, Janin, J, Deutscher, J, Nessler, S.
Deposit date:2001-06-01
Release date:2001-08-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray structure of HPr kinase: a bacterial protein kinase with a P-loop nucleotide-binding domain.
EMBO J., 20, 2001
1KKL
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BU of 1kkl by Molmil
L.casei HprK/P in complex with B.subtilis HPr
Descriptor: CALCIUM ION, HprK protein, PHOSPHOCARRIER PROTEIN HPR
Authors:Fieulaine, S, Morera, S, Poncet, S, Galinier, A, Janin, J, Deutscher, J, Nessler, S.
Deposit date:2001-12-10
Release date:2002-08-28
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr.
Proc.Natl.Acad.Sci.USA, 99, 2002
1KKM
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BU of 1kkm by Molmil
L.casei HprK/P in complex with B.subtilis P-Ser-HPr
Descriptor: CALCIUM ION, HprK protein, PHOSPHATE ION, ...
Authors:Fieulaine, S, Morera, S, Poncet, S, Galinier, A, Janin, J, Deutscher, J, Nessler, S.
Deposit date:2001-12-10
Release date:2002-08-28
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr.
Proc.Natl.Acad.Sci.USA, 99, 2002
4EB0
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BU of 4eb0 by Molmil
Crystal structure of Leaf-branch compost bacterial cutinase homolog
Descriptor: LCC, THIOCYANATE ION
Authors:Sulaiman, S, You, D.J, Eiko, K, Koga, Y, Kanaya, S.
Deposit date:2012-03-23
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Leaf-branch compost bacterial cutinase homolog
To be Published
4JE6
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BU of 4je6 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase
Descriptor: Peptide deformylase 1A, chloroplastic/mitochondrial, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
4JE8
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BU of 4je8 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase in complex with Met-Ala-Ser
Descriptor: Peptide deformylase 1A, chloroplastic/mitochondrial, ZINC ION, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
3SVL
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BU of 3svl by Molmil
Structural basis of the improvement of ChrR - a multi-purpose enzyme
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, protein yieF
Authors:Poulain, S, Eswaramoorthy, S, Hienerwadel, R, Bremond, N, Sylvester, M.D, Zhang, Y.B, Van Der Lelie, D, Berthomieu, C, Matin, A.C.
Deposit date:2011-07-12
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of ChrR-A Quinone Reductase with the Capacity to Reduce Chromate.
Plos One, 7, 2012
4JE7
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BU of 4je7 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1A, chloroplastic/mitochondrial, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
3PN3
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BU of 3pn3 by Molmil
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21
Descriptor: Peptide deformylase 1B, chloroplastic, ZINC ION, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-11-18
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Trapping conformational States along ligand-binding dynamics of Peptide deformylase: the impact of induced fit on enzyme catalysis.
Plos Biol., 9, 2011
3O3J
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BU of 3o3j by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with inhibitor 6b
Descriptor: 2-(5-bromo-1H-indol-3-yl)-N-hydroxyacetamide, Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-07-24
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6P
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BU of 3m6p by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-03-16
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3PN4
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BU of 3pn4 by Molmil
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with actinonin (crystallized in PEG-550-MME)
Descriptor: ACTINONIN, Peptide deformylase 1B, chloroplastic, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-11-18
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Trapping conformational States along ligand-binding dynamics of Peptide deformylase: the impact of induced fit on enzyme catalysis.
Plos Biol., 9, 2011
3PN2
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BU of 3pn2 by Molmil
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) (crystallized in PEG-550-MME)
Descriptor: Peptide deformylase 1B, chloroplastic, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-11-18
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trapping conformational States along ligand-binding dynamics of Peptide deformylase: the impact of induced fit on enzyme catalysis.
Plos Biol., 9, 2011
3PN6
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BU of 3pn6 by Molmil
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41M mutant
Descriptor: Peptide deformylase 1B, chloroplastic, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-11-18
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trapping conformational States along ligand-binding dynamics of Peptide deformylase: the impact of induced fit on enzyme catalysis.
Plos Biol., 9, 2011
3PN5
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BU of 3pn5 by Molmil
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41Q mutant
Descriptor: Peptide deformylase 1B, chloroplastic, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-11-18
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trapping conformational States along ligand-binding dynamics of Peptide deformylase: the impact of induced fit on enzyme catalysis.
Plos Biol., 9, 2011
1ZY1
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BU of 1zy1 by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser
Descriptor: Peptide deformylase, mitochondrial, ZINC ION, ...
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
2KVL
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BU of 2kvl by Molmil
NMR structure of the C-terminal domain of VP7
Descriptor: Major outer capsid protein VP7
Authors:Elaid, S, Libersou, S, Lepault, J, Morellet, N, Bouaziz, S.
Deposit date:2010-03-17
Release date:2011-03-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the C-terminal domain of VP7
To be Published
1ZXZ
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BU of 1zxz by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-5000 MME as precipitant
Descriptor: Peptide deformylase, mitochondrial, ZINC ION
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
1ZY0
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BU of 1zy0 by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-6000
Descriptor: Peptide deformylase, mitochondrial, ZINC ION
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
2LM7
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BU of 2lm7 by Molmil
NMR structure of the C-terminal domain of VP7 in membrane mimicking micelles
Descriptor: Outer capsid glycoprotein VP7
Authors:Elaid, S, Libersou, S, Ouldali, M, Morellet, N, Lepault, J, Bouaziz, S.
Deposit date:2011-11-23
Release date:2012-10-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the C-terminal domain of VP7 in membrane mimicking micelles
To be Published

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