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PDB: 488 results

5WLJ
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BU of 5wlj by Molmil
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH1
Descriptor: De Novo Metal Binding Helical Bundle, ZINC ION
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2017-07-27
Release date:2018-01-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
J. Am. Chem. Soc., 140, 2018
5WLL
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BU of 5wll by Molmil
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH1
Descriptor: GLYCEROL, Helical Bundle 4DH1, ZINC ION
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2017-07-27
Release date:2018-01-03
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
J. Am. Chem. Soc., 140, 2018
7F4N
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BU of 7f4n by Molmil
Crystal structure of SAH-bound MTA1-p1-p2 complex
Descriptor: MT-a70 family protein, S-ADENOSYL-L-HOMOCYSTEINE, Transmembrane protein, ...
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
5ZB2
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BU of 5zb2 by Molmil
Crystal structure of Rad7 and Elc1 complex in yeast
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ...
Authors:Jiang, T, Liu, L, Huo, Y.
Deposit date:2018-02-09
Release date:2019-02-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.30000544 Å)
Cite:Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex.
DNA Repair (Amst.), 77, 2019
7WH1
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BU of 7wh1 by Molmil
structure of C elegans BCMO-2
Descriptor: Beta-Carotene 15,15'-MonoOxygenase, FE (III) ION, GLYCEROL, ...
Authors:Pan, W, Liu, L.
Deposit date:2021-12-29
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Analysis of Nonheme Iron Enzymes BCMO-1 and BCMO-2 from Caenorhabditis elegans .
Front Mol Biosci, 9, 2022
7DDQ
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BU of 7ddq by Molmil
Structure of RC-LH1-PufX from Rhodobacter veldkampii
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
Authors:Bracun, L, Yamagata, A, Shirouzu, M, Liu, L.N.
Deposit date:2020-10-29
Release date:2021-06-30
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-angstrom resolution.
Sci Adv, 7, 2021
7CU8
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BU of 7cu8 by Molmil
Crystal structure of the soluble domain of TiME protein from Mycobacterium tuberculosis
Descriptor: SULFATE ION, Tube-forming protein in Mycobacterial Envelope (TiME)
Authors:Gong, W, Cai, X, Liu, L, Wen, C.
Deposit date:2020-08-21
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Identification and architecture of a putative secretion tube across mycobacterial outer envelope.
Sci Adv, 7, 2021
7CU9
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BU of 7cu9 by Molmil
Crystal structure of the soluble domain of TiME protein from Mycobacterium smegmatis
Descriptor: GLYCEROL, MAGNESIUM ION, Tube-forming protein in Mycobacterial Envelpe, ...
Authors:Gong, W, Cai, X, Liu, L, Wen, C.
Deposit date:2020-08-21
Release date:2021-08-25
Last modified:2022-03-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Identification and architecture of a putative secretion tube across mycobacterial outer envelope.
Sci Adv, 7, 2021
7WH0
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BU of 7wh0 by Molmil
structure of C elegans BCMO-1
Descriptor: Beta-Carotene 15,15'-MonoOxygenase, FE (III) ION, GLYCEROL, ...
Authors:Pan, W, Liu, L.
Deposit date:2021-12-29
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Functional Analysis of Nonheme Iron Enzymes BCMO-1 and BCMO-2 from Caenorhabditis elegans .
Front Mol Biosci, 9, 2022
7UDY
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BU of 7udy by Molmil
Designed pentameric channel QLLL
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Designed channel QLLL
Authors:Kratochvil, H.T, Thomaston, J.L, Liu, L, DeGrado, W.F.
Deposit date:2022-03-20
Release date:2022-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Transient water wires mediate selective proton transport in designed channel proteins.
Nat.Chem., 15, 2023
7UDX
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BU of 7udx by Molmil
Designed pentameric proton channel QLQL
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, De novo designed pentameric proton channel QLQL
Authors:Kratochvil, H.T, Thomaston, J.L, Liu, L, DeGrado, W.F.
Deposit date:2022-03-20
Release date:2022-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Transient water wires mediate selective proton transport in designed channel proteins.
Nat.Chem., 15, 2023
7X8J
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BU of 7x8j by Molmil
Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded)
Descriptor: Mannose-1-phosphate guanylyltransferase 1, SULFATE ION
Authors:Zhao, S, Zhang, C, Liu, L.
Deposit date:2022-03-13
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Crystal Structures of Arabidopsis thaliana GDP-D-Mannose Pyrophosphorylase VITAMIN C DEFECTIVE 1.
Front Plant Sci, 13, 2022
7X8K
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BU of 7x8k by Molmil
Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (product-bound)
Descriptor: CITRATE ANION, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Mannose-1-phosphate guanylyltransferase 1, ...
Authors:Zhao, S, Zhang, C, Liu, L.
Deposit date:2022-03-13
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structures of Arabidopsis thaliana GDP-D-Mannose Pyrophosphorylase VITAMIN C DEFECTIVE 1.
Front Plant Sci, 13, 2022
8J1R
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BU of 8j1r by Molmil
cryo-EM structures of Ufd4 in complex with Ubc4-Ub
Descriptor: Ubiquitin fusion degradation protein 4, Ubiquitin-conjugating enzyme E2 4
Authors:Ai, H.S, Mao, J.X, Wu, X.W, Cai, H.Y, Pan, M, Liu, L.
Deposit date:2023-04-13
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structural Visualization of HECT-E3 Ufd4 accepting and transferring Ubiquitin to Form K29/K48-branched Polyubiquitination on N-degron. bioRxiv,doi: ttps://doi.org/10.1101/2023.05.23.542033
To Be Published
8J1P
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BU of 8j1p by Molmil
Cryo-EM structure of Ufd4 in complex with K29/48 triUb
Descriptor: Ubiquitin, Ubiquitin fusion degradation protein 4
Authors:Ai, H.S, Mao, J.X, Wu, X.W, Pan, M, Liu, L.
Deposit date:2023-04-13
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:Structural Insights into the Molecular Mechanism of Ufd4-catalyzed Elongation of K48-linked Ubiquitin Chain through Lys29 Linkage
To Be Published
7F4S
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BU of 7f4s by Molmil
Crystal structure of TthMTA1-PteMTA9 complex
Descriptor: MT-a70 family protein, MTA9
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
7F4Q
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BU of 7f4q by Molmil
Crystal structure of SAH-bound MTA1-p2 complex
Descriptor: MT-a70 family protein, S-ADENOSYL-L-HOMOCYSTEINE, Transmembrane protein, ...
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
7F4L
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BU of 7f4l by Molmil
Crystal structure of MTA1-p1-p2 complex
Descriptor: MT-a70 family protein, Transmembrane protein, putative, ...
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
7F4M
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BU of 7f4m by Molmil
Crystal structure of SAM-bound MTA1-p1-p2 complex
Descriptor: MT-a70 family protein, S-ADENOSYLMETHIONINE, Transmembrane protein, ...
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
7F4T
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BU of 7f4t by Molmil
Crystal structure of SAM-bound TthMTA1-Ptep2 complex
Descriptor: MT-a70 family protein, Ptep2, S-ADENOSYLMETHIONINE
Authors:Chen, J, Liu, L.
Deposit date:2021-06-21
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.68 Å)
Cite:Structural basis for MTA1c-mediated DNA N6-adenine methylation
Nat Commun, 13, 2022
7VW2
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BU of 7vw2 by Molmil
Structure of a dimeric periplasmic protein bound with cupric ions
Descriptor: COPPER (II) ION, DUF305 domain-containing protein
Authors:Yang, J, Liu, L.
Deposit date:2021-11-09
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.186 Å)
Cite:Structural basis of copper binding by a dimeric periplasmic protein forming a six-helical bundle.
J.Inorg.Biochem., 229, 2022
5ILA
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BU of 5ila by Molmil
Deg9 protease domain
Descriptor: Protease Do-like 9
Authors:Ouyang, M, Liu, L, Li, X.Y, Zhao, S, Zhang, L.X.
Deposit date:2016-03-04
Release date:2017-03-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:The crystal structure of Deg9 reveals a novel octameric-type HtrA protease
Nat Plants, 3, 2017
7UDW
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BU of 7udw by Molmil
Designed pentameric proton channel QQLL
Descriptor: De novo designed pentameric proton channel QQLL
Authors:Kratochvil, H.T, Thomaston, J.L, Mravic, M, Nicoludis, J, Liu, L, DeGrado, W.F.
Deposit date:2022-03-20
Release date:2022-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Transient water wires mediate selective proton transport in designed channel proteins.
Nat.Chem., 15, 2023
7UDV
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BU of 7udv by Molmil
Designed pentameric proton channel LLQL
Descriptor: De novo designed proton channel LLQL
Authors:Kratochvil, H.T, Thomaston, J.L, Liu, L, DeGrado, W.F.
Deposit date:2022-03-20
Release date:2022-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Transient water wires mediate selective proton transport in designed channel proteins.
Nat.Chem., 15, 2023
7UDZ
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BU of 7udz by Molmil
Designed pentameric proton channel LQLL
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, De novo designed pentameric proton channel LQLL
Authors:Kratochvil, H.T, Thomaston, J.L, Mravic, M, Nicoludis, J.M, Liu, L, DeGrado, W.F.
Deposit date:2022-03-20
Release date:2022-04-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Transient water wires mediate selective proton transport in designed channel proteins.
Nat.Chem., 15, 2023

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