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PDB: 41 results

1WMJ
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Solution structure of Thioredoxin type h from Oryza sativa
Descriptor: Thioredoxin H-type
Authors:Kumeta, H, Ogura, H, Akagi, K, Katoh, E, Inagaki, F.
Deposit date:2004-07-09
Release date:2005-10-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of Thioredoxin type h from Oryza sativa
To be Published
1TH5
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Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
Descriptor: NifU1
Authors:Kumeta, H, Ogura, K, Asayama, M, Katoh, S, Katoh, E, Inagaki, F.
Deposit date:2004-06-01
Release date:2005-09-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.
J.Biomol.Nmr, 38, 2007
5XND
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Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Descriptor: CALCIUM ION, Parvalbumin beta
Authors:Kumeta, H, Nakayama, H, Ogura, K.
Deposit date:2017-05-22
Release date:2017-12-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Sci Rep, 7, 2017
1IY3
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Solution Structure of the Human lysozyme at 4 degree C
Descriptor: Lysozyme
Authors:Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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Solution structure of the human lysozyme at 35 degree C
Descriptor: Lysozyme
Authors:Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
2KWC
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BU of 2kwc by Molmil
The NMR structure of the autophagy-related protein Atg8
Descriptor: Autophagy-related protein 8
Authors:Kumeta, H, Watanabe, M, Nakatogawa, H, Yamaguchi, M, Ogura, K, Adachi, W, Fujioka, Y, Noda, N.N, Ohsumi, Y, Inagaki, F.
Deposit date:2010-04-05
Release date:2010-05-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
2M63
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The protease-resistant N-terminal domain of TIR-domain containing adaptor molecule-1, TICAM-1
Descriptor: TIR domain-containing adapter molecule 1
Authors:Kumeta, H, Enokizono, Y, Sakakibara, H, Ogura, K, Matsumoto, M, Seya, T, Inagaki, F.
Deposit date:2013-03-20
Release date:2014-03-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1.
J.Biomol.Nmr, 58, 2014
2LI5
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NMR structure of Atg8-Atg7C30 complex
Descriptor: Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7
Authors:Kumeta, H, Satoo, K, Noda, N.N, Fujioka, Y, Ogura, K, Nakatogawa, H, Ohsumi, Y, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-11-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
2KSV
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The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum
Descriptor: Protein-glutaminase
Authors:Kumeta, H, Miwa, N, Ogura, K, Kai, Y, Mizukoshi, T, Shimba, N, Suzuki, E, Inagaki, F.
Deposit date:2010-01-14
Release date:2010-02-16
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.
J.Biomol.Nmr, 46, 2010
2KE4
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BU of 2ke4 by Molmil
The NMR structure of the TC10 and Cdc42 interacting domain of CIP4
Descriptor: Cdc42-interacting protein 4
Authors:Kumeta, H, Kanoh, D, Kobashigawa, Y, Inagaki, F.
Deposit date:2009-01-22
Release date:2009-03-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.
J.Biomol.Nmr, 44, 2009
2LDR
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Solution structure of Helix-RING domain of Cbl-b in the Tyr363 phosphorylated form
Descriptor: E3 ubiquitin-protein ligase CBL-B, ZINC ION
Authors:Kumeta, H, Kobashigawa, Y, Inagaki, F.
Deposit date:2011-06-01
Release date:2011-12-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
2JPE
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FHA domain of NIPP1
Descriptor: Nuclear inhibitor of protein phosphatase 1
Authors:Kumeta, H, Ogura, K, Fujioka, Y, Tanuma, N, Kikuchi, K, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-15
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:The NMR structure of the NIPP1 FHA domain.
J.Biomol.Nmr, 40, 2008
2LX2
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1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
Descriptor: Type III antifreeze protein nfeAFP11
Authors:Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2KBT
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Attachment of an NMR-invisible solubility enhancement tag (INSET) using a sortase-mediated protein ligation method
Descriptor: Proto-oncogene vav,Immunoglobulin G-binding protein G
Authors:Kumeta, H, Kobashigawa, Y, Ogura, K, Inagaki, F.
Deposit date:2008-12-07
Release date:2009-02-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method
J.Biomol.Nmr, 43, 2009
2LX3
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1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
Descriptor: Type III antifreeze protein nfeAFP11
Authors:Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
8X0R
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BU of 8x0r by Molmil
solution structure of Cry j 7
Descriptor: Cypmaclein
Authors:Zheng, J, Aizawa, T, Kumeta, H.
Deposit date:2023-11-05
Release date:2024-11-06
Method:SOLUTION NMR
Cite:solution structure of Cry j 7
To Be Published
7VOZ
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BU of 7voz by Molmil
Solution structure of cecropin P1(1-29) in dodecylphosphocholine micelles
Descriptor: Cecropin-P1
Authors:Gu, H, Kumeta, H, Aizawa, T.
Deposit date:2021-10-15
Release date:2022-09-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Three-Dimensional Structure of the Antimicrobial Peptide Cecropin P1 in Dodecylphosphocholine Micelles and the Role of the C-Terminal Residues
Acs Omega, 7, 2022
7DEH
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Solution structure of cecropin P1 in dodecylphosphocholine micelles
Descriptor: Cecropin-P1
Authors:Gu, H, Kumeta, H, Aizawa, T.
Deposit date:2020-11-04
Release date:2021-11-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Three-Dimensional Structure of the Antimicrobial Peptide Cecropin P1 in Dodecylphosphocholine Micelles and the Role of the C-Terminal Residues
Acs Omega, 7, 2022
4DVY
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BU of 4dvy by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
Descriptor: Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012
4DVZ
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Crystal structure of the Helicobacter pylori CagA oncoprotein
Descriptor: Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA
Cell Host Microbe, 12, 2012
2CZO
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BU of 2czo by Molmil
Solution Structure of the PX Domain of Bem1p
Descriptor: Bud emergence protein 1
Authors:Maeda, A, Ogura, K, Horiuchi, M, Kumeta, H, Fujioka, Y, Inagaki, F.
Deposit date:2005-07-14
Release date:2006-10-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PX domain of Bem1p
To be Published
5ZR0
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Solution structure of peptidyl-prolyl cis/trans isomerase domain of Trigger Factor in complex with MBP
Descriptor: Maltose-binding periplasmic protein,Trigger factor
Authors:Kawagoe, S, Nakagawa, H, Kumeta, H, Ishimori, K, Saio, T.
Deposit date:2018-04-21
Release date:2018-08-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into prolinecis/transisomerization of unfolded proteins catalyzed by the trigger factor chaperone.
J. Biol. Chem., 293, 2018
3VQI
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Crystal structure of Kluyveromyces marxianus Atg5
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Atg5, SULFATE ION
Authors:Yamaguchi, M, Noda, N.N, Yamamoto, H, Shima, T, Kumeta, H, Kobashigawa, Y, Akada, R, Ohsumi, Y, Inagaki, F.
Deposit date:2012-03-24
Release date:2012-08-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
2YZ0
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Solution Structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
Descriptor: Serine/threonine-protein kinase GCN2
Authors:Ogura, K, Torikai, S, Kumeta, H, Inagaki, F.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
to be published
2RQE
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Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan specific recognition
Descriptor: Beta-1,3-glucan-binding protein
Authors:Takahasi, K, Ochiai, M, Horiuchi, M, Kumeta, H, Ogura, K, Ashida, M, Inagaki, F.
Deposit date:2009-04-22
Release date:2009-06-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.
Proc.Natl.Acad.Sci.USA, 106, 2009

 

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