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PDB: 24 件

4N6W
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X-Ray Crystal Structure of Citrate-bound PhnZ
分子名称: CITRATE ANION, FE (III) ION, Predicted HD phosphohydrolase PhnZ
著者Worsdorfer, B, Lingaraju, M, Yennawar, N.H, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.E.
登録日2013-10-14
公開日2013-11-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4N71
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X-Ray Crystal Structure of 2-amino-1-hydroxyethylphosphonate-bound PhnZ
分子名称: FE (III) ION, Predicted HD phosphohydrolase PhnZ, [(1R)-2-amino-1-hydroxyethyl]phosphonic acid
著者Woersdoerfer, B, Lingaraju, M, Yennawar, N, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.-E.
登録日2013-10-14
公開日2013-11-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.984 Å)
主引用文献Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4D8G
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Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 2 - low Mn)
分子名称: FE (III) ION, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta
著者Dassama, L.M.K, Boal, A.K, Krebs, C, Rosenzweig, A.C, Bollinger Jr, J.M.
登録日2012-01-10
公開日2012-02-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Evidence that the beta subunit of Chlamydia trachomatis ribonucleotide reductase is active with the manganese ion of its manganese(IV)/iron(III) cofactor in site 1.
J.Am.Chem.Soc., 134, 2012
4D8F
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Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 1 - high Mn)
分子名称: ACETIC ACID, FE (III) ION, MANGANESE (II) ION, ...
著者Dassama, L.M.K, Boal, A.K, Krebs, C, Rosenzweig, A.C, Bollinger Jr, J.M.
登録日2012-01-10
公開日2012-02-15
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Evidence that the beta subunit of Chlamydia trachomatis ribonucleotide reductase is active with the manganese ion of its manganese(IV)/iron(III) cofactor in site 1.
J.Am.Chem.Soc., 134, 2012
3EPM
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BU of 3epm by Molmil
Crystal structure of Caulobacter crescentus ThiC
分子名称: 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE, SULFATE ION, Thiamine biosynthesis protein thiC, ...
著者Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
登録日2008-09-29
公開日2008-10-28
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.793 Å)
主引用文献Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
3EPO
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Crystal structure of Caulobacter crescentus ThiC complexed with HMP-P
分子名称: (4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE, Thiamine biosynthesis protein thiC
著者Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
登録日2008-09-29
公開日2008-10-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
3EPN
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Crystal structure of Caulobacter crescentus ThiC complexed with imidazole ribonucleotide
分子名称: 1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole, Thiamine biosynthesis protein thiC
著者Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
登録日2008-09-29
公開日2008-10-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
7MJV
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MiaB in the complex with s-adenosylmethionine and RNA
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Esakova, O.A, Grove, T.L, Yennawar, N.H, Arcinas, A.J, Wang, B, Krebs, C, Almo, S.C, Booker, S.J.
登録日2021-04-20
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Nature, 597, 2021
7MJZ
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The structure of MiaB with pentasulfide bridge
分子名称: IRON/SULFUR CLUSTER, PENTASULFIDE-SULFUR, SODIUM ION, ...
著者Esakova, O.A, Grove, T.L, Yennawar, N.H, Arcinas, A.J, Wang, B, Krebs, C, Almo, S.C, Booker, S.J.
登録日2021-04-20
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Nature, 597, 2021
7MJY
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MiaB in the complex with s-adenosyl-L-homocysteine and RNA
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE3-S4 CLUSTER, ...
著者Esakova, O.A, Grove, T.L, Yennawar, N.H, Arcinas, A.J, Wang, B, Krebs, C, Almo, S.C, Booker, S.J.
登録日2021-04-20
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Nature, 597, 2021
7MJX
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MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-DEOXYADENOSINE, FE3-S4 CLUSTER, ...
著者Esakova, O.A, Grove, T.L, Yennawar, N.H, Arcinas, A.J, Wang, B, Krebs, C, Almo, S.C, Booker, S.J.
登録日2021-04-20
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Nature, 597, 2021
7MJW
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Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
分子名称: 5'-DEOXYADENOSINE, FE3-S4 methylated cluster, IRON/SULFUR CLUSTER, ...
著者Esakova, O.A, Grove, T.L, Yennawar, N.H, Arcinas, A.J, Wang, B, Krebs, C, Almo, S.C, Booker, S.J.
登録日2021-04-20
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Nature, 597, 2021
8CVB
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BU of 8cvb by Molmil
Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and 6-OH-hyoscyamine
分子名称: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.532 Å)
主引用文献Structure of the H6H cyclization reactant complex
To Be Published
8CVC
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Structure of Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine
分子名称: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FORMIC ACID, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.791 Å)
主引用文献Structure mimicking the H6H cyclization ferryl complex
To Be Published
8CVG
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Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and 6-OH-hyoscyamine
分子名称: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structure of the L289F H6H cyclization reactant complex
To Be Published
8CVD
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Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and scopolamine
分子名称: (1R,2R,4S,5S,7s)-9-methyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-7-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FE (II) ION, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.717 Å)
主引用文献Structure of the H6H cyclization product complex
To Be Published
8CVA
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BU of 8cva by Molmil
Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and 6-OH-hyoscyamine
分子名称: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FE (II) ION, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.581 Å)
主引用文献Structure of the H6H hydroxylation product complex
To Be Published
8CVF
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Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and hyoscyamine
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Hyoscyamine 6-beta-hydroxylase, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.532 Å)
主引用文献Structure of the L289F H6H ferryl-mimicking complex
To Be Published
8CVH
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BU of 8cvh by Molmil
Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine
分子名称: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate, 1,2-ETHANEDIOL, FORMIC ACID, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structure of the L289F H6H cyclization ferryl-mimicking complex
To Be Published
8CV8
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Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine
分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, FE (II) ION, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.532 Å)
主引用文献Structure of the H6H hydroxylation reactant complex
To Be Published
8CV9
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BU of 8cv9 by Molmil
Structure of Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and hyoscyamine
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Hyoscyamine 6-beta-hydroxylase, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure of the H6H hydroxylation reactant complex
To Be Published
8CVE
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Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine
分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, FE (II) ION, ...
著者Wenger, E.W, Boal, A.K, Bollinger, J.M, Krebs, C.
登録日2022-05-18
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Structure of the L289F H6H hydroxylation reactant complex
To Be Published
3LZD
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BU of 3lzd by Molmil
Crystal structure of Dph2 from Pyrococcus horikoshii with 4Fe-4S cluster
分子名称: Dph2, IRON/SULFUR CLUSTER, SULFATE ION
著者Torelli, A.T, Zhang, Y, Zhu, X, Lee, M, Dzikovski, B, Koralewski, R.M, Wang, E, Freed, J, Krebs, C, Lin, H, Ealick, S.E.
登録日2010-03-01
公開日2010-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme.
Nature, 465, 2010
3LZC
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BU of 3lzc by Molmil
Crystal structure of Dph2 from Pyrococcus horikoshii
分子名称: Dph2
著者Zhang, Y, Zhu, X, Torelli, A.T, Lee, M, Dzikovski, B, Koralewski, R.M, Wang, E, Freed, J, Krebs, C, Lin, H, Ealick, S.E.
登録日2010-03-01
公開日2010-06-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.261 Å)
主引用文献Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme.
Nature, 465, 2010

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件を2024-11-06に公開中

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