2YT1
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![BU of 2yt1 by Molmil](/molmil-images/mine/2yt1) | Solution structure of the chimera of the C-terminal tail peptide of APP and the C-terminal PID domain of Fe65L | 分子名称: | Amyloid beta A4 protein and Amyloid beta A4 precursor protein-binding family B member 2 | 著者 | Li, H, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-05 | 公開日 | 2008-04-08 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode J.Biol.Chem., 283, 2008
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2YSD
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![BU of 2ysd by Molmil](/molmil-images/mine/2ysd) | Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1 | 分子名称: | Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 | 著者 | Ohnishi, S, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-03 | 公開日 | 2007-10-09 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1 To be Published
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2Z4R
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![BU of 2z4r by Molmil](/molmil-images/mine/2z4r) | Crystal structure of domain III from the Thermotoga maritima replication initiation protein DnaA | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION | 著者 | Fujikawa, N, Ozaki, S, Kagawa, W, Park, S.-Y, Katayama, T, Kurumizaka, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-06-25 | 公開日 | 2008-02-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.05 Å) | 主引用文献 | A Common Mechanism for the ATP-DnaA-dependent Formation of Open Complexes at the Replication Origin J.Biol.Chem., 283, 2008
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3ABT
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![BU of 3abt by Molmil](/molmil-images/mine/3abt) | Crystal Structure of LSD1 in complex with trans-2-pentafluorophenylcyclopropylamine | 分子名称: | Lysine-specific histone demethylase 1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-(pentafluorophenyl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate | 著者 | Mimasu, S, Umezawa, N, Sato, S, Higuchi, T, Umehara, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-12-21 | 公開日 | 2010-07-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Structurally Designed trans-2-Phenylcyclopropylamine Derivatives Potently Inhibit Histone Demethylase LSD1/KDM1 Biochemistry, 49, 2010
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3AJI
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![BU of 3aji by Molmil](/molmil-images/mine/3aji) | Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion | 分子名称: | 26S proteasome non-ATPase regulatory subunit 10, Proteasome (Prosome, macropain) 26S subunit, ... | 著者 | Sato, S, Mimasu, S, Sato, A, Hino, N, Sakamoto, K, Umehara, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2010-06-07 | 公開日 | 2010-12-22 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Crystallographic study of a site-specifically cross-linked protein complex with a genetically incorporated photoreactive amino acid Biochemistry, 50, 2011
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3A99
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![BU of 3a99 by Molmil](/molmil-images/mine/3a99) | Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Proto-oncogene serine/threonine-protein kinase pim-1 | 著者 | Morishita, D, Takami, M, Yoshikawa, S, Katayama, R, Sato, S, Kukimoto-Niino, M, Umehara, T, Shirouzu, M, Sekimizu, K, Yokoyama, S, Fujita, N. | 登録日 | 2009-10-22 | 公開日 | 2010-11-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Cell-permeable carboxyl-terminal p27(Kip1) peptide exhibits anti-tumor activity by inhibiting Pim-1 kinase J.Biol.Chem., 286, 2011
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3AJD
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![BU of 3ajd by Molmil](/molmil-images/mine/3ajd) | Crystal structure of ATRM4 | 分子名称: | GLYCEROL, ISOPROPYL ALCOHOL, Putative methyltransferase MJ0026 | 著者 | Hirano, M, Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2010-06-01 | 公開日 | 2010-06-30 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.27 Å) | 主引用文献 | Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin. J.Mol.Biol., 401, 2010
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3AON
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![BU of 3aon by Molmil](/molmil-images/mine/3aon) | Crystal structure of the central axis (NtpD-NtpG) in the catalytic portion of Enterococcus hirae V-type sodium ATPase | 分子名称: | NITRATE ION, V-type sodium ATPase subunit D, V-type sodium ATPase subunit G | 著者 | Saijo, S, Arai, S, Hossain, K.M.M, Yamato, I, Kakinuma, Y, Ishizuka-Katsura, Y, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Murata, T. | 登録日 | 2010-10-04 | 公開日 | 2011-10-05 | 最終更新日 | 2011-12-28 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of the central axis DF complex of the prokaryotic V-ATPase Proc.Natl.Acad.Sci.USA, 108, 2011
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3AM6
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2GQH
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![BU of 2gqh by Molmil](/molmil-images/mine/2gqh) | |
3ABU
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![BU of 3abu by Molmil](/molmil-images/mine/3abu) | Crystal Structure of LSD1 in complex with a 2-PCPA derivative, S1201 | 分子名称: | Lysine-specific histone demethylase 1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3R,3aS)-3-[2-(benzyloxy)-3-fluorophenyl]-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate | 著者 | Mimasu, S, Umezawa, N, Sato, S, Higuchi, T, Umehara, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-12-21 | 公開日 | 2010-07-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structurally Designed trans-2-Phenylcyclopropylamine Derivatives Potently Inhibit Histone Demethylase LSD1/KDM1 Biochemistry, 49, 2010
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3AQV
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![BU of 3aqv by Molmil](/molmil-images/mine/3aqv) | Human AMP-activated protein kinase alpha 2 subunit kinase domain (T172D) complexed with compound C | 分子名称: | 5'-AMP-activated protein kinase catalytic subunit alpha-2, 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine | 著者 | Handa, N, Takagi, T, Saijo, S, Kishishita, S, Toyama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2010-11-19 | 公開日 | 2011-04-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.08 Å) | 主引用文献 | Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain Acta Crystallogr.,Sect.D, 67, 2011
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1V8W
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![BU of 1v8w by Molmil](/molmil-images/mine/1v8w) | Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant, complexed with SO4 and Zn | 分子名称: | ADP-ribose pyrophosphatase, SULFATE ION, ZINC ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-15 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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3AYH
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3AWI
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![BU of 3awi by Molmil](/molmil-images/mine/3awi) | Bifunctional tRNA modification enzyme MnmC from Escherichia coli | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC | 著者 | Kitamura, A, Sengoku, T, Nishimoto, M, Yokoyama, S, Bessho, Y. | 登録日 | 2011-03-23 | 公開日 | 2011-06-01 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli Protein Sci., 2011
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3AXT
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![BU of 3axt by Molmil](/molmil-images/mine/3axt) | Complex structure of tRNA methyltransferase Trm1 from Aquifex aeolicus with S-adenosyl-L-Methionine | 分子名称: | Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1, S-ADENOSYLMETHIONINE, SULFATE ION, ... | 著者 | Ihsanawati, Sengoku, T, Yokoyama, S, Bessho, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-04-14 | 公開日 | 2011-08-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.491 Å) | 主引用文献 | Substrate tRNA recognition mechanism of a multisite-specific tRNA methyltransferase, Aquifex aeolicus Trm1, based on the X-ray crystal structure J.Biol.Chem., 286, 2011
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3EOQ
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![BU of 3eoq by Molmil](/molmil-images/mine/3eoq) | The crystal structure of putative zinc protease beta-subunit from Thermus thermophilus HB8 | 分子名称: | Putative zinc protease | 著者 | Ohtsuka, J, Ichihara, Y, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M. | 登録日 | 2008-09-29 | 公開日 | 2009-03-17 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | Crystal structure of TTHA1264, a putative M16-family zinc peptidase from Thermus thermophilus HB8 that is homologous to the beta subunit of mitochondrial processing peptidase. Proteins, 2009
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2ZDC
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![BU of 2zdc by Molmil](/molmil-images/mine/2zdc) | Crystal structure of dUTPase from Sulfolobus tokodaii | 分子名称: | 167aa long hypothetical dUTPase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION | 著者 | Kanagawa, M, Baba S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-11-21 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of dUTPase from Sulfolobus tokodaii To be Published
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1TJL
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![BU of 1tjl by Molmil](/molmil-images/mine/1tjl) | Crystal structure of transcription factor DksA from E. coli | 分子名称: | DnaK suppressor protein, ZINC ION | 著者 | Perederina, A, Svetlov, V, Vassylyeva, M.N, Artsimovitch, I, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-06-06 | 公開日 | 2004-09-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription Cell(Cambridge,Mass.), 118, 2004
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2ZUL
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![BU of 2zul by Molmil](/molmil-images/mine/2zul) | Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine | 分子名称: | Probable ribosomal RNA small subunit methyltransferase, S-ADENOSYLMETHIONINE | 著者 | Wang, H, Kawazoe, M, Tatsuguchi, A, Naoe, C, Takemoto, C, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-10-21 | 公開日 | 2009-10-27 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine To be Published
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2Z4S
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![BU of 2z4s by Molmil](/molmil-images/mine/2z4s) | Crystal structure of domain III from the Thermotoga maritima replication initiation protein DnaA | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION | 著者 | Fujikawa, N, Ozaki, S, Kagawa, W, Park, S.-Y, Katayama, T, Kurumizaka, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-06-25 | 公開日 | 2008-02-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | A Common Mechanism for the ATP-DnaA-dependent Formation of Open Complexes at the Replication Origin J.Biol.Chem., 283, 2008
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2HOW
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1UFR
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![BU of 1ufr by Molmil](/molmil-images/mine/1ufr) | Crystal Structure of TT1027 from Thermus thermophilus HB8 | 分子名称: | CHLORIDE ION, pyr mRNA-binding attenuation protein | 著者 | Matsuura, T, Sakai, H, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-08 | 公開日 | 2003-12-08 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal Structure of TT1027 from Thermus thermophilus HB8 To be Published
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2OZP
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1UDS
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![BU of 1uds by Molmil](/molmil-images/mine/1uds) | Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex aeolicus | 分子名称: | PHOSPHATE ION, Ribonuclease PH, SULFATE ION | 著者 | Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-05-02 | 公開日 | 2003-09-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus J.Biol.Chem., 278, 2003
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