Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2433 件

3SUV
DownloadVisualize
BU of 3suv by Molmil
Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-DNJ
分子名称: 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, Beta-hexosaminidase, SULFATE ION
著者Sumida, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-07-11
公開日2012-06-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach
Org.Biomol.Chem., 10, 2012
2PH3
DownloadVisualize
BU of 2ph3 by Molmil
Crystal structure of 3-oxoacyl-[acyl carrier protein] reductase TTHA0415 from Thermus thermophilus
分子名称: 3-oxoacyl-[acyl carrier protein] reductase
著者Swindell II, J.T, Chen, L, Zhu, J, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Fu, Z.-Q, Chrzas, J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-10
公開日2007-05-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of 3-oxoacyl-[acyl carrier protein] reductase TTHA0415 from Thermus thermophilus
To be Published
2PG0
DownloadVisualize
BU of 2pg0 by Molmil
Crystal structure of acyl-CoA dehydrogenase from Geobacillus kaustophilus
分子名称: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
著者Chen, L, Chen, L.-Q, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Zhao, M, Li, Y, Fu, Z.-Q, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-06
公開日2007-05-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of acyl-CoA dehydrogenase from G. kaustophilus
To be Published
2PKP
DownloadVisualize
BU of 2pkp by Molmil
Crystal structure of 3-isopropylmalate dehydratase (leuD)from Methhanocaldococcus Jannaschii DSM2661 (MJ1271)
分子名称: DI(HYDROXYETHYL)ETHER, Homoaconitase small subunit, ZINC ION
著者Jeyakanthan, J, Gayathri, D.R, Velmurugan, D, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-18
公開日2008-04-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit
Biochemistry, 49, 2010
2PHC
DownloadVisualize
BU of 2phc by Molmil
Crystal structure of conserved uncharacterized protein PH0987 from Pyrococcus horikoshii
分子名称: Uncharacterized protein PH0987
著者Swindell II, J.T, Chen, L, Zhu, J, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Fu, Z.-Q, Chrzas, J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-10
公開日2007-05-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Crystal structure of conserved uncharacterized protein PH0987 from Pyrococcus horikoshii.
To be Published
2PT5
DownloadVisualize
BU of 2pt5 by Molmil
Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Shikimate kinase
著者Jeyakanthan, J, Nithya, N, Shimada, A, Velmurugan, D, Ebihara, A, Shinkai, A, Kuramitsu, S, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-08
公開日2008-05-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5
To be Published
6LR2
DownloadVisualize
BU of 6lr2 by Molmil
SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-2 CONTAINING PROTEIN 2
分子名称: YTH domain containing protein 2 (YTHDC2)
著者Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2020-01-15
公開日2021-01-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-CONTAINING PROTEIN 2
TO BE PUBLISHED
1ULH
DownloadVisualize
BU of 1ulh by Molmil
A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase
分子名称: Tryptophanyl-tRNA synthetase
著者Kise, Y, Sengoku, T, Ishii, R, Yokoyama, S, Park, S.G, Lee, S.W, Kim, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-12
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase
Nat.Struct.Mol.Biol., 11, 2004
1GD8
DownloadVisualize
BU of 1gd8 by Molmil
THE CRYSTAL STRUCTURE OF BACTERIA-SPECIFIC L17 RIBOSOMAL PROTEIN.
分子名称: 50S RIBOSOMAL PROTEIN L17
著者Vassylyev, D.G, Shirouzu, M, Wada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2000-09-22
公開日2001-09-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus.
To be Published
1V2X
DownloadVisualize
BU of 1v2x by Molmil
TrmH
分子名称: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase
著者Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-17
公開日2004-05-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme
STRUCTURE, 12, 2004
1V8L
DownloadVisualize
BU of 1v8l by Molmil
Structure Analysis of the ADP-ribose pyrophosphatase complexed with ADP-ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-10
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8R
DownloadVisualize
BU of 1v8r by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with ADP-ribose and Zn
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, ZINC ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-14
公開日2005-02-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8Y
DownloadVisualize
BU of 1v8y by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Zn
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, ZINC ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-15
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8D
DownloadVisualize
BU of 1v8d by Molmil
Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus
分子名称: ZINC ION, hypothetical protein (TT1679)
著者Kishishita, S, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-05
公開日2004-07-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of the conserved hypothetical protein TT1679 from Thermus thermophilus HB8
To be Published
1V8T
DownloadVisualize
BU of 1v8t by Molmil
Crystal Structure analysis of the ADP-ribose pyrophosphatase complexed with ribose-5'-phosphate and Zn
分子名称: ADP-ribose pyrophosphatase, RIBOSE-5-PHOSPHATE, ZINC ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-14
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V6F
DownloadVisualize
BU of 1v6f by Molmil
Solution Structure of Glia Maturation Factor-beta from Mus Musculus
分子名称: glia maturation factor, beta
著者Goroncy, A.K, Kigawa, T, Koshiba, S, Tomizawa, T, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-29
公開日2004-05-29
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR solution structures of actin depolymerizing factor homology domains.
Protein Sci., 18, 2009
1V8N
DownloadVisualize
BU of 1v8n by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with Zn
分子名称: ADP-ribose pyrophosphatase, ZINC ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-12
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8V
DownloadVisualize
BU of 1v8v by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Mg
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, MAGNESIUM ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-15
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1VCF
DownloadVisualize
BU of 1vcf by Molmil
Crystal Structure of IPP isomerase at I422
分子名称: CADMIUM ION, FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
著者Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-08
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of IPP isomerase at I422
To be Published
1V8U
DownloadVisualize
BU of 1v8u by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant with SO4 and Mg
分子名称: ADP-ribose pyrophosphatase, MAGNESIUM ION, SULFATE ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-15
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8M
DownloadVisualize
BU of 1v8m by Molmil
Crystal structure analysis of ADP-ribose pyrophosphatase complexed with ADP-ribose and Gd
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, GADOLINIUM ATOM
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-12
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8S
DownloadVisualize
BU of 1v8s by Molmil
Crystal structure analusis of the ADP-ribose pyrophosphatase complexed with AMP and Mg
分子名称: ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-14
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1VCG
DownloadVisualize
BU of 1vcg by Molmil
Crystal Structure of IPP isomerase at P43212
分子名称: FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
著者Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-08
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Crystal Structure of IPP isomerase at P43212
To be Published
1AA9
DownloadVisualize
BU of 1aa9 by Molmil
HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: C-HA-RAS, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Ito, Y, Yamasaki, Y, Muto, Y, Kawai, G, Nishimura, S, Miyazawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1997-01-27
公開日1997-07-29
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
1V8I
DownloadVisualize
BU of 1v8i by Molmil
Crystal Structure Analysis of the ADP-ribose pyrophosphatase
分子名称: ADP-ribose pyrophosphatase
著者Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-09
公開日2004-10-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon