PDB Search results for query - Protein Data Bank Japan

PDB: 141 results

Feruloyl-CoA hydratase/lyase from Sphingomonas paucimobilis SYK-6
Descriptor:	DI(HYDROXYETHYL)ETHER, Feruloyl-CoA hydratase/lyase, GLYCEROL
Authors:	Seok, J, Kim, K.-J.
Deposit date:	2022-05-26
Release date:	2023-01-18
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.986 Å)
Cite:	Production of various phenolic aldehyde compounds using the 4CL-FCHL biosynthesis platform. Int.J.Biol.Macromol., 226, 2023

7YM9

Crystal structure of a PET hydrolase from Cryptosporangium aurantiacum
Descriptor:	MALONATE ION, Poly(ethylene terephthalate) hydrolase
Authors:	Hong, H, Ki, D, Kim, K.-J.
Deposit date:	2022-07-28
Release date:	2023-07-12
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.34 Å)
Cite:	Discovery and rational engineering of PET hydrolase with both mesophilic and thermophilic PET hydrolase properties. Nat Commun, 14, 2023

7YME

Crystal structure of a PET hydrolase M9 variant from Cryptosporangium aurantiacum
Descriptor:	Poly(Ethylene terephthalate) hydrolase
Authors:	Ki, D, Hong, H, Kim, K.-J.
Deposit date:	2022-07-28
Release date:	2023-07-12
Last modified:	2024-10-09
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Discovery and rational engineering of PET hydrolase with both mesophilic and thermophilic PET hydrolase properties. Nat Commun, 14, 2023

7VGM

Crystal structure of Phenylalanine hydroxylase from Bacillus cereus ATCC 14579
Descriptor:	1,2-ETHANEDIOL, ACETIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:	Park, J, Kim, K.-J.
Deposit date:	2021-09-17
Release date:	2022-04-27
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (2.27 Å)
Cite:	Structural studies of a novel auxiliary-domain-containing phenylalanine hydroxylase from Bacillus cereus ATCC 14579. Acta Crystallogr D Struct Biol, 78, 2022

8I70

Crystal structure of NADP-binding form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Descriptor:	GLYCEROL, L(+)-TARTARIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:	Kim, S, Kim, K.-J.
Deposit date:	2023-01-30
Release date:	2023-06-14
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Cryo-EM structure of bifunctional malonyl-CoA reductase from Chloroflexus aurantiacus reveals a dynamic domain movement for high enzymatic activity. Int.J.Biol.Macromol., 242, 2023

8I6Z

Crystal structure of apo-form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Descriptor:	GLYCEROL, L(+)-TARTARIC ACID, Short-chain dehydrogenase/reductase SDR
Authors:	Kim, S, Kim, K.-J.
Deposit date:	2023-01-30
Release date:	2023-06-14
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Cryo-EM structure of bifunctional malonyl-CoA reductase from Chloroflexus aurantiacus reveals a dynamic domain movement for high enzymatic activity. Int.J.Biol.Macromol., 242, 2023

8IDU

Crystal structure of substrate bound-form dehydroquinate dehydratase from Corynebacterium glutamicum
Descriptor:	1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID, 3-dehydroquinate dehydratase, GLYCEROL, ...
Authors:	Lee, C.H, Kim, S, Kim, K.-J.
Deposit date:	2023-02-14
Release date:	2023-12-27
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural and Biochemical Analysis of 3-Dehydroquinate Dehydratase from Corynebacterium glutamicum . J Microbiol Biotechnol., 33, 2023

8IDR

Crystal structure of apo-form of dehydroquinate dehydratase from Corynebacterium glutamicum
Descriptor:	3-dehydroquinate dehydratase, CITRATE ANION, TETRAETHYLENE GLYCOL
Authors:	Lee, C.H, Kim, S, Kim, K.-J.
Deposit date:	2023-02-14
Release date:	2023-12-27
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural and Biochemical Analysis of 3-Dehydroquinate Dehydratase from Corynebacterium glutamicum . J Microbiol Biotechnol., 33, 2023

8HKB

TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis mutant K184D
Descriptor:	Periplasmic terephthalate binding protein (TBP), terephthalic acid
Authors:	Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:	2022-11-25
Release date:	2023-06-21
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023

8HK9

Apo-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis
Descriptor:	GLYCEROL, Periplasmic terephthalate binding protein (TBP)
Authors:	Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:	2022-11-25
Release date:	2023-06-21
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023

8HKA

TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis
Descriptor:	Periplasmic terephthalate binding protein (TBP), terephthalic acid
Authors:	Lee, S.H, Seo, H, Kim, K.-J.
Deposit date:	2022-11-25
Release date:	2023-06-21
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.02 Å)
Cite:	Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023

8I4N

Crystal strcuture of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Descriptor:	6-phosphogluconate dehydrogenase, decarboxylating
Authors:	Yu, H, Kim, K.-J.
Deposit date:	2023-01-20
Release date:	2023-07-26
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (2.41 Å)
Cite:	Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum. J Microbiol Biotechnol., 33, 2023

8I4Q

Crystal structure of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Descriptor:	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-phosphogluconate dehydrogenase, decarboxylating, ...
Authors:	Yu, H, Kim, K.-J.
Deposit date:	2023-01-20
Release date:	2023-07-26
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum. J Microbiol Biotechnol., 33, 2023

8HT2

Crystal structure of Acetylornithine aminotransferase from Corynebacterium glutamicum
Descriptor:	Acetylornithine aminotransferase
Authors:	Ki, D, Kim, K.-J.
Deposit date:	2022-12-20
Release date:	2024-01-17
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.65 Å)
Cite:	Crystal Structure and Functional Characterization of Acetylornithine Aminotransferase from Corynebacterium glutamicum. J.Agric.Food Chem., 71, 2023

8HT4

Crystal structure of Acetylornithine aminotransferase complex with PLP from Corynebacterium glutamicum
Descriptor:	Acetylornithine aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:	Ki, D, Kim, K.-J.
Deposit date:	2022-12-20
Release date:	2024-01-17
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.51 Å)
Cite:	Crystal Structure and Functional Characterization of Acetylornithine Aminotransferase from Corynebacterium glutamicum. J.Agric.Food Chem., 71, 2023

5E3Q

Crystal structure of DapD in complex with succinyl-CoA from Corynebacterium glutamicum
Descriptor:	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, SUCCINYL-COENZYME A
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2015-10-03
Release date:	2015-11-04
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Crystal Structure and Biochemical Characterization of Tetrahydrodipicolinate N-Succinyltransferase from Corynebacterium glutamicum. J.Agric.Food Chem., 63, 2015

5E3R

Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum
Descriptor:	(2S)-2-aminoheptanedioic acid, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2015-10-03
Release date:	2015-11-04
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Crystal Structure and Biochemical Characterization of Tetrahydrodipicolinate N-Succinyltransferase from Corynebacterium glutamicum. J.Agric.Food Chem., 63, 2015

5E3P

Crystal structure of DapD from Corynebacterium glutamicum
Descriptor:	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, SULFATE ION, TETRAETHYLENE GLYCOL
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2015-10-03
Release date:	2015-11-04
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	Crystal Structure and Biochemical Characterization of Tetrahydrodipicolinate N-Succinyltransferase from Corynebacterium glutamicum. J.Agric.Food Chem., 63, 2015

5EER

Crystal structure of DapB from Corynebacterium glutamicum
Descriptor:	4-hydroxy-tetrahydrodipicolinate reductase, SULFATE ION
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2015-10-23
Release date:	2015-11-11
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structural Insight into Dihydrodipicolinate Reductase from Corybebacterium glutamicum for Lysine Biosynthesis. J. Microbiol. Biotechnol., 26, 2016

5EES

Crystal structure of DapB in complex with NADP+ from Corynebacterium glutamicum
Descriptor:	4-hydroxy-tetrahydrodipicolinate reductase, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2015-10-23
Release date:	2015-11-11
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.15 Å)
Cite:	Structural Insight into Dihydrodipicolinate Reductase from Corybebacterium glutamicum for Lysine Biosynthesis. J. Microbiol. Biotechnol., 26, 2016

7CBE

Crystal structure of Homoserine O-succinyltransferase from Escherichia coli K-12
Descriptor:	1,2-ETHANEDIOL, GLYCEROL, Homoserine O-succinyltransferase, ...
Authors:	Sagong, H.-Y, Kim, K.-J.
Deposit date:	2020-06-12
Release date:	2021-06-16
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal structure of Homoserine O-succinyltransferase from Escherichia coli K-12 To Be Published

7FBG

Kinetic and structural analysis by Peptidoglycan editing factor from Bacillus cereus ATCC 14579
Descriptor:	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Purine nucleoside phosphorylase, ...
Authors:	Seok, J, Kim, K.-J.
Deposit date:	2021-07-10
Release date:	2022-07-13
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Kinetic and structural analysis by Peptidoglycan editing factor from Bacillus cereus ATCC 14579 to be published

7DB5

Crystal structure of alpha-L-fucosidase from Vibrio sp. strain EJY3
Descriptor:	Alpha-L-fucosidase, GLYCEROL, PHOSPHATE ION
Authors:	Hong, H, Kim, K.-J.
Deposit date:	2020-10-19
Release date:	2021-03-24
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Dual alpha-1,4- and beta-1,4-Glycosidase Activities by the Novel Carbohydrate-Binding Module in alpha-l-Fucosidase from Vibrio sp. Strain EJY3. J.Agric.Food Chem., 69, 2021

7CYX

Crystal strcuture of Glycine oxidase from Bacillus cereus ATCC 14579
Descriptor:	FLAVIN-ADENINE DINUCLEOTIDE, Glycine oxidase
Authors:	Seok, J, Kim, K.-J.
Deposit date:	2020-09-05
Release date:	2020-10-14
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.41 Å)
Cite:	Structural basis for stereospecificity to d-amino acid of glycine oxidase from Bacillus cereus ATCC 14579. Biochem.Biophys.Res.Commun., 533, 2020

6KD7

Crystal structure of geranylgeranyl pyrophosphate synthase
Descriptor:	GLYCEROL, MAGNESIUM ION, PYROPHOSPHATE, ...
Authors:	Kim, S, Kim, K.-J.
Deposit date:	2019-07-01
Release date:	2019-09-11
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structure of geranylgeranyl pyrophosphate synthase (crtE) from Nonlabens dokdonensis DSW-6. Biochem.Biophys.Res.Commun., 518, 2019

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Total results:	141
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Kim, K.-J."