Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 323 results

7CNX
DownloadVisualize
BU of 7cnx by Molmil
Crystal structure of Apo PSD from E. coli (2.63 A)
Descriptor: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNY
DownloadVisualize
BU of 7cny by Molmil
Crystal structure of 8PE bound PSD from E. coli (2.12 A)
Descriptor: 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, ...
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNZ
DownloadVisualize
BU of 7cnz by Molmil
Crystal structure of 10PE bound PSD from E. coli (2.70 A)
Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ...
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNW
DownloadVisualize
BU of 7cnw by Molmil
Crystal structure of Apo PSD from E. coli (1.90 A)
Descriptor: DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ...
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
5ZIQ
DownloadVisualize
BU of 5ziq by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 4
Descriptor: 1,2-ETHANEDIOL, Globin protein, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kim, J, Fukuda, Y, Inoue, T.
Deposit date:2018-03-16
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5ZM9
DownloadVisualize
BU of 5zm9 by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7
Descriptor: CHLORIDE ION, Globin Protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kim, J, Fukuda, Y, Inoue, T.
Deposit date:2018-04-02
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5ZW3
DownloadVisualize
BU of 5zw3 by Molmil
Crystal Structure of TrmR from B. subtilis
Descriptor: MAGNESIUM ION, Putative O-methyltransferase YrrM, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, J, Ryu, H, Almo, S.C.
Deposit date:2018-05-14
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
5ZW4
DownloadVisualize
BU of 5zw4 by Molmil
Crystal structure of tRNA bound TrmR
Descriptor: PHOSPHATE ION, Putative O-methyltransferase YrrM, RNA (5'-R(*CP*CP*UP*GP*CP*UP*UP*UP*GP*CP*AP*CP*GP*CP*AP*GP*G)-3'), ...
Authors:Kim, J, Ryu, H, Almo, S.C.
Deposit date:2018-05-14
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
5X06
DownloadVisualize
BU of 5x06 by Molmil
DNA replication regulation protein
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ...
Authors:Kim, J, Cho, Y.
Deposit date:2017-01-20
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.237 Å)
Cite:Replication regulation protein
To Be Published
9IK1
DownloadVisualize
BU of 9ik1 by Molmil
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Kim, S, Kim, G.R, Kim, Y.O, Han, X, Nagel, J, Kim, J, Song, D.I, Muller, C.E, Yoon, M.H, Jin, M.S, Kim, Y.C.
Deposit date:2024-06-26
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Discovery of Triazolopyrimidine Derivatives as Selective P2X3 Receptor Antagonists Binding to an Unprecedented Allosteric Site as Evidenced by Cryo-Electron Microscopy.
J.Med.Chem., 67, 2024
8IS3
DownloadVisualize
BU of 8is3 by Molmil
Structural model for the micelle-bound indolicidin-like peptide in solution
Descriptor: Indolicidin-like antimicrobial peptide
Authors:Kim, B, Ko, Y.H, Kim, J, Lee, J, Nam, C.H, Kim, J.H.
Deposit date:2023-03-20
Release date:2024-03-20
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Structural model for the micelle-bound indolicidin-like peptide in solution
To Be Published
6LHW
DownloadVisualize
BU of 6lhw by Molmil
Structure of N-terminal and C-terminal domains of FANCA
Descriptor: Fanconi anemia complementation group A
Authors:Jeong, E, Lee, S, Shin, J, Kim, Y, Kim, J, Scharer, O, Kim, Y, Kim, H, Cho, Y.
Deposit date:2019-12-10
Release date:2020-03-25
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.84 Å)
Cite:Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.
Nucleic Acids Res., 48, 2020
8J46
DownloadVisualize
BU of 8j46 by Molmil
Human Consensus Olfactory Receptor OR52c in apo state, OR52c-bRIL
Descriptor: Olfactory receptor OR52c,Soluble cytochrome b562
Authors:Choi, C.W, Bae, J, Choi, H.-J, Kim, J.
Deposit date:2023-04-19
Release date:2023-12-20
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family.
Nat Commun, 14, 2023
8JOZ
DownloadVisualize
BU of 8joz by Molmil
Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser
Descriptor: MAGNESIUM ION, SINEFUNGIN, tRNA 5-carboxymethoxyuridine methyltransferase, ...
Authors:Yoo, J, Kim, J.
Deposit date:2023-06-09
Release date:2023-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification.
Nucleic Acids Res., 51, 2023
3BM2
DownloadVisualize
BU of 3bm2 by Molmil
Crystal structure of a minimal nitroreductase ydjA from Escherichia coli K12 with and without FMN cofactor
Descriptor: Protein ydjA
Authors:Choi, J.W, Kim, J.S.
Deposit date:2007-12-12
Release date:2008-01-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor
J.Mol.Biol., 377, 2008
3BM1
DownloadVisualize
BU of 3bm1 by Molmil
Crystal structure of a minimal nitroreductase ydjA from Escherichia coli K12 with and without FMN cofactor
Descriptor: FLAVIN MONONUCLEOTIDE, Protein ydjA
Authors:Choi, J.W, Kim, J.S.
Deposit date:2007-12-12
Release date:2008-01-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor
J.Mol.Biol., 377, 2008
3BD3
DownloadVisualize
BU of 3bd3 by Molmil
Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, catalytic antibody
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-14
Release date:2008-04-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Proteins, 71, 2008
3SXO
DownloadVisualize
BU of 3sxo by Molmil
Mycobacterium tuberculosis Eis protein initiates modulation of host immune responses by acetylation of DUSP16/MKP-7
Descriptor: Enhanced intracellular survival protein
Authors:Kim, K.H, An, D.R, Yoon, J.Y, Kim, H.S, Yoon, H.J, Song, J.S, Im, H.N, Kim, J, Kim, D.J, Lee, S.J, Kim, H.J, Lee, J.Y, Suh, S.W.
Deposit date:2011-07-15
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mycobacterium tuberculosis Eis protein initiates modulation of host immune responses by acetylation of DUSP16/MKP-7
To be Published
8ZUG
DownloadVisualize
BU of 8zug by Molmil
Human Keratin 19 head domain segment Y6-G28 in solution
Descriptor: Keratin, type I cytoskeletal 19
Authors:Ji, Y, Jeong, M, Kim, J, Lee, C.H.
Deposit date:2024-06-09
Release date:2024-08-21
Method:SOLUTION NMR
Cite:Human Keratin 19 head domain segment Y6-G28 in solution
To Be Published
4ML7
DownloadVisualize
BU of 4ml7 by Molmil
Crystal structure of Brucella abortus PliC in complex with human lysozyme
Descriptor: Humanlysozyme, Lysozyme C
Authors:Ha, N.C, Um, S.H, Kim, J.S.
Deposit date:2013-09-06
Release date:2014-07-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for the Inhibition of Human Lysozyme by PliC from Brucella abortus
Biochemistry, 52, 2013
4MIR
DownloadVisualize
BU of 4mir by Molmil
The structure of Brucella abortus PliC in the hexagonal crystal form
Descriptor: Putative uncharacterized protein
Authors:Ha, N.C, Um, S.H, Kim, J.S.
Deposit date:2013-09-02
Release date:2014-07-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the inhibition of human lysozyme by PliC from Brucella abortus
Biochemistry, 52, 2013
4MIS
DownloadVisualize
BU of 4mis by Molmil
The structure of Brucella abortus PliC in the orthorombic crystal form
Descriptor: Putative uncharacterized protein
Authors:Ha, N.C, Um, S.H, Kim, J.S.
Deposit date:2013-09-02
Release date:2014-07-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the inhibition of human lysozyme by PliC from Brucella abortus
Biochemistry, 52, 2013
3SXN
DownloadVisualize
BU of 3sxn by Molmil
Mycobacterium tuberculosis Eis protein initiates modulation of host immune responses by acetylation of DUSP16/MKP-7
Descriptor: COENZYME A, Enhanced intracellular survival protein
Authors:Kim, K.H, An, D.R, Yoon, J.Y, Kim, H.S, Yoon, H.J, Song, J.S, Im, H.N, Kim, J, Kim, D.J, Lee, S.J, Kim, H.J, Lee, J.Y, Suh, S.W.
Deposit date:2011-07-15
Release date:2012-05-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Mycobacterium tuberculosis Eis protein initiates suppression of host immune responses by acetylation of DUSP16/MKP-7
Proc.Natl.Acad.Sci.USA, 109, 2012
4RNZ
DownloadVisualize
BU of 4rnz by Molmil
Structure of Helicobacter pylori Csd3 from the hexagonal crystal
Descriptor: Conserved hypothetical secreted protein, GLYCEROL, NICKEL (II) ION, ...
Authors:An, D.R, Kim, H.S, Kim, J, Im, H.N, Yoon, H.J, Yoon, J.Y, Jang, J.Y, Hesek, D, Lee, M, Mobashery, S, Kim, S.-J, Lee, B.I, Suh, S.W.
Deposit date:2014-10-27
Release date:2015-03-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
4RNY
DownloadVisualize
BU of 4rny by Molmil
Structure of Helicobacter pylori Csd3 from the orthorhombic crystal
Descriptor: Conserved hypothetical secreted protein, GLYCEROL, SULFATE ION, ...
Authors:An, D.R, Kim, H.S, Kim, J, Im, H.N, Yoon, H.J, Yoon, J.Y, Jang, J.Y, Hesek, D, Lee, M, Mobashery, S, Kim, S.-J, Lee, B.I, Suh, S.W.
Deposit date:2014-10-27
Release date:2015-03-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon