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PDB: 550 results

4V46
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BU of 4v46 by Molmil
Crystal structure of the BAFF-BAFF-R complex
Descriptor: MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 13B, Tumor necrosis factor receptor superfamily member 13C
Authors:Kim, H.M, Yu, K.S, Lee, M.E, Shin, D.R, Kim, Y.S, Paik, S.G, Yoo, O.J, Lee, H, Lee, J.-O.
Deposit date:2003-03-23
Release date:2014-07-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation
NAT.STRUCT.BIOL., 10, 2003
3JUK
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BU of 3juk by Molmil
The Crystal Structure of UDP-glucose pyrophosphorylase complexed with UDP-glucose
Descriptor: MAGNESIUM ION, UDP-glucose pyrophosphorylase (GalU), URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Kim, H, Kim, K.K.
Deposit date:2009-09-15
Release date:2010-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the reaction mechanism of UDP-glucose pyrophosphorylase
Mol.Cells, 29, 2010
8YHU
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BU of 8yhu by Molmil
hTLR3/minibinder 8.6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 3, ...
Authors:Kim, H, Kim, H.
Deposit date:2024-02-28
Release date:2025-02-05
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:De novo design of protein minibinder agonists of TLR3.
Nat Commun, 16, 2025
8YHT
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BU of 8yht by Molmil
hTLR3/minibinder 7.7
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 3, ...
Authors:Kim, H, Kim, H.
Deposit date:2024-02-28
Release date:2025-02-05
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:De novo design of protein minibinder agonists of TLR3.
Nat Commun, 16, 2025
4Y4V
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BU of 4y4v by Molmil
Structure of Helicobacter pylori Csd6 in the D-Ala-bound state
Descriptor: Conserved hypothetical secreted protein, D-ALANINE, GLYCEROL
Authors:Kim, H.S, Im, H.N, Yoon, H.J, Suh, S.W.
Deposit date:2015-02-11
Release date:2015-09-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase
J.Biol.Chem., 290, 2015
5Y7X
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BU of 5y7x by Molmil
Human Peroxisome proliferator-activated receptor (PPAR) delta in complexed with a potent and selective agonist
Descriptor: 2-[2-methyl-4-[[4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-selenazol-5-yl]methylsulfanyl]phenoxy]ethanoic acid, CHLORIDE ION, POTASSIUM ION, ...
Authors:Kim, H.L, Chin, J.W, Cho, S.J, Song, J.Y, Yoon, H.S, Bae, J.H.
Deposit date:2017-08-18
Release date:2018-08-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Highly potent and selective PPAR delta agonist reverses memory deficits in mouse models of Alzheimer's disease.
Theranostics, 14, 2024
5GUY
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BU of 5guy by Molmil
Structural and functional study of chuY from E. coli CFT073 strain
Descriptor: Uncharacterized protein chuY
Authors:Kim, H, Choi, J, HA, S.C, Chaurasia, A.K, Kim, D, Kim, K.K.
Deposit date:2016-08-31
Release date:2017-03-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural and functional study of ChuY from Escherichia coli strain CFT073
Biochem. Biophys. Res. Commun., 482, 2017
7RGU
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BU of 7rgu by Molmil
The crystal structure of RocC bound to a transcriptional terminator
Descriptor: Modified SL3 of RocR, Repressor of competence, RNA Chaperone
Authors:Kim, H.J, Edwards, R.A, Glover, J.N.M.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for recognition of transcriptional terminator structures by ProQ/FinO domain RNA chaperones.
Nat Commun, 13, 2022
7RGT
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BU of 7rgt by Molmil
The crystal structure of RocC, containing FinO domain, 1-126
Descriptor: Repressor of competence, RNA Chaperone, SULFATE ION
Authors:Kim, H.J, Edwards, R.A, Glover, J.N.M.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for recognition of transcriptional terminator structures by ProQ/FinO domain RNA chaperones.
Nat Commun, 13, 2022
1ZI8
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BU of 1zi8 by Molmil
Crystal Structure Analysis of the dienelactone hydrolase mutant(E36D, C123S, A134S, S208G, A229V, K234R)- 1.4 A
Descriptor: Carboxymethylenebutenolidase, GLYCEROL, SULFATE ION
Authors:Kim, H.-K, Liu, J.-W, Carr, P.D, Ollis, D.L.
Deposit date:2005-04-27
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.
Acta Crystallogr.,Sect.D, 61, 2005
4MN7
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BU of 4mn7 by Molmil
Structural and biochemical analysis of type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Descriptor: METHIONINE SULFOXIDE, Putative uncharacterized protein Ta0848
Authors:Kim, H.S, Kwak, G.H, Lee, K.T, Jo, C.H, Hwang, K.Y, Kim, H.Y.
Deposit date:2013-09-10
Release date:2014-08-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical analysis of a type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Arch.Biochem.Biophys., 560, 2014
4DXM
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BU of 4dxm by Molmil
Crystal Structure of an ancestral GFP-like protein
Descriptor: GREEN FLUORESCENT PROTEIN, SULFATE ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.
Structure, 23, 2015
4DXI
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BU of 4dxi by Molmil
Crystal Structure of an Ancestor of All Faviina Proteins
Descriptor: GREEN FLUORESCENT PROTEIN, MAGNESIUM ION
Authors:Kim, H, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.
Structure, 23, 2015
1ZI6
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BU of 1zi6 by Molmil
Crystal Structure Analysis of the dienelactone hydrolase (C123S) mutant- 1.7 A
Descriptor: Carboxymethylenebutenolidase, GLYCEROL, SULFATE ION
Authors:Kim, H.-K, Liu, J.-W, Carr, P.D, Ollis, D.L.
Deposit date:2005-04-27
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.
Acta Crystallogr.,Sect.D, 61, 2005
1ZJ5
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BU of 1zj5 by Molmil
Crystal Structure Analysis of the dienelactone hydrolase mutant (E36D, C123S, A134S, S208G, A229V, K234R) bound with the PMS moiety of the protease inhibitor, Phenylmethylsulfonyl fluoride (PMSF)- 1.7 A
Descriptor: Carboxymethylenebutenolidase, GLYCEROL, SULFATE ION
Authors:Kim, H.-K, Liu, J.-W, Carr, P.D, Ollis, D.L.
Deposit date:2005-04-28
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.
Acta Crystallogr.,Sect.D, 61, 2005
1ZIC
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BU of 1zic by Molmil
Crystal Structure Analysis of the dienelactone hydrolase (C123S, R206A) mutant- 1.7 A
Descriptor: Carboxymethylenebutenolidase, GLYCEROL, SULFATE ION
Authors:Kim, H.-K, Liu, J.-W, Carr, P.D, Ollis, D.L.
Deposit date:2005-04-27
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.
Acta Crystallogr.,Sect.D, 61, 2005
4DXN
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BU of 4dxn by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, Least Evolved Ancestor (LEA)
Descriptor: LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS, SULFATE ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion.
Biochemistry, 52, 2013
4DXO
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BU of 4dxo by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA X(6)
Descriptor: LEA X(6) GFP-LIKE PROTEINS, SODIUM ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.
Structure, 23, 2015
4DXP
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BU of 4dxp by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA X121
Descriptor: LEA X121 GFP-LIKE PROTEINS, MAGNESIUM ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.
Structure, 23, 2015
7RGS
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BU of 7rgs by Molmil
The crystal structure of RocC, containing FinO domain, 24-126
Descriptor: Repressor of competence, RNA Chaperone
Authors:Kim, H.J, Edwards, R.A, Glover, J.N.M.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for recognition of transcriptional terminator structures by ProQ/FinO domain RNA chaperones.
Nat Commun, 13, 2022
5YCX
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BU of 5ycx by Molmil
X-Ray Structure of Enoyl-Acyl Carrier Protein Reductase from Bacillus Anthracis with c-terminal His tag (Apo form)
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI
Authors:Kim, H.T.
Deposit date:2017-09-08
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Structural insights into the dimer-tetramer transition of FabI from Bacillus anthracis
Biochem. Biophys. Res. Commun., 493, 2017
4XZZ
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BU of 4xzz by Molmil
Structure of Helicobacter pylori Csd6 in the ligand-free state
Descriptor: Conserved hypothetical secreted protein, GLYCEROL
Authors:Kim, H.S, Im, H.N, Yoon, H.J, Suh, S.W.
Deposit date:2015-02-05
Release date:2015-09-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase
J.Biol.Chem., 290, 2015
5XR3
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BU of 5xr3 by Molmil
SAV0551 with glyoxylate
Descriptor: GLYOXYLIC ACID, Protein/nucleic acid deglycase HchA
Authors:Kim, H.J, Kwon, A.R, Lee, B.J.
Deposit date:2017-06-08
Release date:2017-11-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural and functional studies of SAV0551 fromStaphylococcus aureusas a chaperone and glyoxalase III.
Biosci. Rep., 37, 2017
5GNA
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BU of 5gna by Molmil
Crystal Structure of flagellin assembly related protein
Descriptor: Flagellar hook-associated protein 2, Flagellar protein FliT
Authors:Kim, H.J, Lee, H.H.
Deposit date:2016-07-20
Release date:2017-08-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of flagellin assembly related protein
To Be Published
7CHT
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BU of 7cht by Molmil
Crystal structure of TTK kinase domain in complex with compound 30
Descriptor: 2-[[2-methoxy-4-(2-oxidanylidenepyrrolidin-1-yl)phenyl]amino]-4-(oxan-4-ylamino)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile, Dual specificity protein kinase TTK, MAGNESIUM ION
Authors:Kim, H.L, Cho, H.Y, Park, Y.W, Lee, Y.H, Ko, E.H, Choi, H.G, Son, J.B, Kim, N.D.
Deposit date:2020-07-06
Release date:2021-05-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray Crystal Structure-Guided Design and Optimization of 7 H -Pyrrolo[2,3- d ]pyrimidine-5-carbonitrile Scaffold as a Potent and Orally Active Monopolar Spindle 1 Inhibitor.
J.Med.Chem., 64, 2021

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PDB entries from 2025-06-11

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