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PDB: 104 results

6LKP
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Crystal structure of Dps1 from the thermophilic non-heterocystous filamentous cyanobacterium Thermoleptolyngbya sp. O-77
Descriptor: DNA protection during starvation protein, FE (III) ION, ZINC ION
Authors:Minato, T, Teramoto, T, Kakuta, Y, Ogo, S, Yoon, K.S.
Deposit date:2019-12-19
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Biochemical and structural characterization of a thermostable Dps protein with His-type ferroxidase centers and outer metal-binding sites.
Febs Open Bio, 10, 2020
1IR6
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BU of 1ir6 by Molmil
Crystal structure of exonuclease RecJ bound to manganese
Descriptor: MANGANESE (II) ION, exonuclease RecJ
Authors:Yamagata, A, Kakuta, Y, Masui, R, Fukuyama, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-09-11
Release date:2002-05-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
2E2R
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BU of 2e2r by Molmil
Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A
Descriptor: 4,4'-PROPANE-2,2-DIYLDIPHENOL, Estrogen-related receptor gamma, GLYCEROL
Authors:Matsushima, A, Kakuta, Y, Teramoto, T, Koshiba, T, Kimura, M, Shimohigashi, Y.
Deposit date:2006-11-16
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma}
J.Biochem.(Tokyo), 142, 2007
2DQA
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BU of 2dqa by Molmil
Crystal Structure of Tapes japonica Lysozyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme, PLATINUM (II) ION, ...
Authors:Goto, T, Kakuta, Y, Abe, Y, Takeshita, K, Imoto, T, Ueda, T.
Deposit date:2006-05-24
Release date:2007-06-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Tapes japonica Lysozyme with Substrate Analogue: STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND MANIFESTATION OF ITS CHITINASE ACTIVITY ACCOMPANIED BY QUATERNARY STRUCTURAL CHANGE
J.Biol.Chem., 282, 2007
1J1G
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BU of 1j1g by Molmil
Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1F
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BU of 1j1f by Molmil
Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
6KZR
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BU of 6kzr by Molmil
Crystal structure of mouse DCAR2 CRD domain
Descriptor: C-type lectin domain family 4, member b1, CALCIUM ION, ...
Authors:Omahdi, Z, Horikawa, Y, Toyonaga, K, Teramoto, T, Kakuta, Y, Yamasaki, S.
Deposit date:2019-09-25
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR.
J.Biol.Chem., 295, 2020
1CJM
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BU of 1cjm by Molmil
HUMAN SULT1A3 WITH SULFATE BOUND
Descriptor: PROTEIN (ARYL SULFOTRANSFERASE), SULFATE ION
Authors:Bidwell, L.M, Mcmanus, M.E, Gaedigk, A, Kakuta, Y, Negishi, M, Pedersen, L, Martin, J.L.
Deposit date:1999-04-18
Release date:1999-11-10
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human catecholamine sulfotransferase.
J.Mol.Biol., 293, 1999
3VKK
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BU of 3vkk by Molmil
Crystal Structure Of The Covalent Intermediate Of Human Cytosolic Beta-Glucosidase-mannose complex
Descriptor: CHLORIDE ION, Cytosolic beta-glucosidase, GLYCEROL, ...
Authors:Noguchi, J, Hayashi, Y, Okino, N, Ito, M, Kimura, M, Kakuta, Y.
Deposit date:2011-11-17
Release date:2012-11-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for inhibition mechanism of human cytosolic beta-glucosidase by monnoside
To be Published
1UAR
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BU of 1uar by Molmil
Crystal structure of Rhodanese from Thermus thermophilus HB8
Descriptor: GLYCEROL, Rhodanese
Authors:Suzuki, Y, Kakuta, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-17
Release date:2004-09-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Rhodanese from Thermus thermophilus HB8
To be published
2CZW
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BU of 2czw by Molmil
Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
Descriptor: 50S ribosomal protein L7Ae
Authors:Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2005-07-19
Release date:2006-04-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
2CZV
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BU of 2czv by Molmil
Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Descriptor: ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ...
Authors:Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M.
Deposit date:2005-07-19
Release date:2006-06-27
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme
J.Mol.Biol., 357, 2006
6K3N
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BU of 6k3n by Molmil
Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with BPA-monoF
Descriptor: 2-fluoranyl-4-[2-(4-hydroxyphenyl)propan-2-yl]phenol, Estrogen-related receptor gamma
Authors:Matsushima, A, Nose, T, Kakuta, Y.
Deposit date:2019-05-21
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Evaluation of the Influence of Halogenation on the Binding of Bisphenol A to the Estrogen-Related Receptor gamma.
Chem.Res.Toxicol., 33, 2020
1IYB
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BU of 1iyb by Molmil
Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2002-08-05
Release date:2003-08-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography
Biochemistry, 41, 2002
3VU2
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BU of 3vu2 by Molmil
Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L
Descriptor: 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic, GLYCEROL, ...
Authors:Chaen, K, Kakuta, Y, Kimura, M.
Deposit date:2012-06-14
Release date:2013-05-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.
Biochem.Biophys.Res.Commun., 424, 2012
3WYZ
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BU of 3wyz by Molmil
On archaeal homologs of the human RNase P protein Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Descriptor: GLYCEROL, Ribonuclease P protein component 3
Authors:Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
3WZ0
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BU of 3wz0 by Molmil
On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Descriptor: Ribonuclease P protein component 2, Ribonuclease P protein component 3
Authors:Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
7EOV
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BU of 7eov by Molmil
Crystal structure of mouse cytosolic sulfotransferase mSULT2A8 in complex with PAP and cholic acid
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, CHOLIC ACID, cytosolic sulfotransferase SULT2A8
Authors:Teramoto, T, Nishio, T, Kakuta, Y.
Deposit date:2021-04-22
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of mouse SULT2A8 reveals the mechanism of 7 alpha-hydroxyl, bile acid sulfation.
Biochem.Biophys.Res.Commun., 562, 2021
1UAX
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BU of 1uax by Molmil
Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease HII
Authors:Hata, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-03-24
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
1V9H
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BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
Descriptor: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
Authors:Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2004-01-26
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
1V76
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BU of 1v76 by Molmil
Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Descriptor: RNase P protein Ph1771p, SULFATE ION
Authors:Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-12-12
Release date:2004-10-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29
Rna, 10, 2004
2ZOX
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BU of 2zox by Molmil
Crystal Structure of the Covalent Intermediate of Human Cytosolic beta-Glucosidase
Descriptor: 4-nitrophenyl alpha-D-glucopyranoside, Cytosolic beta-glucosidase, GLYCEROL, ...
Authors:Noguchi, J, Hayashi, Y, Baba, Y, Okino, N, Kimura, M, Ito, M, Kakuta, Y.
Deposit date:2008-06-17
Release date:2008-09-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the covalent intermediate of human cytosolic beta-glucosidase
Biochem.Biophys.Res.Commun., 374, 2008
1V77
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BU of 1v77 by Molmil
Crystal structure of the PH1877 protein
Descriptor: hypothetical protein PH1877
Authors:Takagi, H, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-12-12
Release date:2004-08-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
1VD1
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BU of 1vd1 by Molmil
Crystal structure of RNase NT in complex with 5'-AMP
Descriptor: ADENOSINE MONOPHOSPHATE, RNase NGR3
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2004-03-17
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VD3
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BU of 1vd3 by Molmil
Ribonuclease NT in complex with 2'-UMP
Descriptor: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, RNase NGR3
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2004-03-18
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published

221051

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