Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1101 results

8VZC
DownloadVisualize
BU of 8vzc by Molmil
Crystal Structure of 2-Hydroxyacyl-CoA Lyase/Synthse ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, Formyl-CoA, and ADP
Descriptor: 1,2-ETHANEDIOL, 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(hydroxymethyl)-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
Deposit date:2024-02-11
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZF
DownloadVisualize
BU of 8vzf by Molmil
Crystal Structure of 2-Hydroxyacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, Coenzyme A, and ADP
Descriptor: 1,2-ETHANEDIOL, 2-Hydroxyacyl-CoA Lyase/Synthase, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
Deposit date:2024-02-11
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZA
DownloadVisualize
BU of 8vza by Molmil
Crystal Structure of 2-Hydroxacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, L-Lactyl-CoA, and ADP
Descriptor: 2-Hydroxyacyl-CoA lyase/Synthase, 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, ACETYL GROUP, ...
Authors:Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
Deposit date:2024-02-11
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZB
DownloadVisualize
BU of 8vzb by Molmil
Crystal Structure of 2-Hydroxacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, D-Lactyl-CoA, and ADP
Descriptor: 1,2-ETHANEDIOL, 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, ACETIC ACID, ...
Authors:Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
Deposit date:2024-02-11
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
6X4I
DownloadVisualize
BU of 6x4i by Molmil
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with 3'-uridinemonophosphate
Descriptor: 1,2-ETHANEDIOL, 3'-URIDINEMONOPHOSPHATE, SODIUM ION, ...
Authors:Chang, C, Kim, Y, Maltseva, N, Jedrzejczak, R, Endres, M, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-05-22
Release date:2020-06-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2.
Commun Biol, 4, 2021
4B6J
DownloadVisualize
BU of 4b6j by Molmil
Crystal structure of phosphoserine phosphatase from T. onnurineus
Descriptor: PHOSPHOSERINE PHOSPHATASE
Authors:Jung, T.-Y, Kim, Y.-S, Song, H.-N, Woo, E.
Deposit date:2012-08-14
Release date:2012-12-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Identification of a Novel Ligand Binding Site in Phosphoserine Phosphatase from the Hyperthermophilic Archaeon Thermococcus Onnurineus.
Proteins, 81, 2013
1D9M
DownloadVisualize
BU of 1d9m by Molmil
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE(P2)
Descriptor: CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE
Authors:Oh, D, Kim, Y.
Deposit date:1999-10-28
Release date:1999-11-12
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides.
J.Pept.Res., 53, 1999
2A9S
DownloadVisualize
BU of 2a9s by Molmil
The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Descriptor: CHLORIDE ION, competence/damage-inducible protein CinA
Authors:Lunin, V.V, Evdokimova, E, Kudritska, M, Kim, Y, Joachimiak, A, Edwards, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-07-12
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
To be Published
3IM9
DownloadVisualize
BU of 3im9 by Molmil
Crystal structure of MCAT from Staphylococcus aureus
Descriptor: ACETATE ION, CALCIUM ION, Malonyl CoA-acyl carrier protein transacylase, ...
Authors:Hong, S.K, Kim, K.H, Park, J.K, Kim, Y.M, Kim, E.E.
Deposit date:2009-08-10
Release date:2010-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:New design platform for malonyl-CoA-acyl carrier protein transacylase
Febs Lett., 584, 2010
3IM8
DownloadVisualize
BU of 3im8 by Molmil
Crystal structure of MCAT from Streptococcus pneumoniae
Descriptor: ACETATE ION, Malonyl acyl carrier protein transacylase
Authors:Hong, S.K, Kim, K.H, Park, J.K, Kim, Y.M, Kim, E.E.
Deposit date:2009-08-10
Release date:2010-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New design platform for malonyl-CoA-acyl carrier protein transacylase
Febs Lett., 584, 2010
6V70
DownloadVisualize
BU of 6v70 by Molmil
Crystal Structure of Metallo Beta Lactamase from Hirschia baltica with Cadmium in the Active Site
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CADMIUM ION, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-06
Release date:2019-12-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Hirschia baltica.
To Be Published
6PI9
DownloadVisualize
BU of 6pi9 by Molmil
Crystal structure of 16S rRNA methyltransferase RmtF in complex with S-Adenosyl-L-homocysteine
Descriptor: 16S rRNA (guanine(1405)-N(7))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Stogios, P.J, Kim, Y, Evdokimova, E, Di Leo, R, Semper, C, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-06-26
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine
To be Published
6V54
DownloadVisualize
BU of 6v54 by Molmil
Crystal Structure of Metallo Beta Lactamase from Hirschia baltica
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-03
Release date:2019-12-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Hirschia baltica.
To Be Published
6V61
DownloadVisualize
BU of 6v61 by Molmil
Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in the Complex with the Inhibitor Captopril
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-04
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in the Complex with the Inhibitor Captopril.
To Be Published
6V5M
DownloadVisualize
BU of 6v5m by Molmil
Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in Complex with Succinate
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-lactamase, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-04
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in Complex with Succinate.
To Be Published
6V71
DownloadVisualize
BU of 6v71 by Molmil
Crystal Structure of Metallo Beta Lactamase from Hirschia baltica with Nitrate in the Active Site
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, FORMIC ACID, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-06
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Hirschia baltica with Nitrate in the Active Site
To Be Published
3FFL
DownloadVisualize
BU of 3ffl by Molmil
Crystal Structure of the N-terminal Domain of Anaphase-Promoting Complex Subunit 7
Descriptor: Anaphase-promoting complex subunit 7
Authors:Han, D, Kim, K, Kim, Y, Kim, Y.
Deposit date:2008-12-03
Release date:2008-12-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the N-terminal Domain of Anaphase-Promoting Complex Subunit 7
To be published
2MBC
DownloadVisualize
BU of 2mbc by Molmil
Solution Structure of human holo-PRL-3 in complex with vanadate
Descriptor: Protein tyrosine phosphatase type IVA 3
Authors:Jeong, K, Kang, D, Kim, J, Shin, S, Jin, B, Lee, C, Kim, E, Jeon, Y.H, Kim, Y.
Deposit date:2013-07-29
Release date:2013-10-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and backbone dynamics of vanadate-bound PRL-3: comparison of 15N nuclear magnetic resonance relaxation profiles of free and vanadate-bound PRL-3.
Biochemistry, 53, 2014
3CRA
DownloadVisualize
BU of 3cra by Molmil
Crystal Structure of Escherichia coli MazG, the Regulator of Nutritional Stress Response
Descriptor: Protein mazG
Authors:Lee, S, Kim, M.H, Kang, B.S, Kim, J.S, Kim, Y.G, Kim, K.J.
Deposit date:2008-04-05
Release date:2008-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Escherichia coli MazG, the regulator of nutritional stress response.
J.Biol.Chem., 283, 2008
3CRC
DownloadVisualize
BU of 3crc by Molmil
Crystal Structure of Escherichia coli MazG, the Regulator of Nutritional Stress Response
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Protein mazG
Authors:Lee, S, Kim, M.H, Kang, B.S, Kim, J.S, Kim, Y.G, Kim, K.J.
Deposit date:2008-04-05
Release date:2008-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of Escherichia coli MazG, the regulator of nutritional stress response.
J.Biol.Chem., 283, 2008
7O2L
DownloadVisualize
BU of 7o2l by Molmil
Yeast 20S proteasome in complex with the covalently bound inhibitor b-lactone (2R,3S)-3-isopropyl-4-oxo-2-oxetane-carboxylate (IOC)
Descriptor: (2 {R},3 {S})-3-methanoyl-4-methyl-2-hydroxy-pentanoic acid, 20S proteasome, BJ4_G0020160.mRNA.1.CDS.1, ...
Authors:Shi, Y.M, Hirschmann, M, Shi, Y.N, Shabbir, A, Abebew, D, Tobias, N.J, Gruen, P, Crames, J.J, Poeschel, L, Kuttenlochner, W, Richter, C, Herrmann, J, Mueller, R, Thanwisai, A, Pidot, S.J, Stinear, T.P, Groll, M, Kim, Y, Bode, H.
Deposit date:2021-03-30
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria.
Nat.Chem., 14, 2022
5F51
DownloadVisualize
BU of 5f51 by Molmil
Structure of B. abortus WrbA-related protein A (apo)
Descriptor: NAD(P)H dehydrogenase (quinone), SULFATE ION
Authors:Herrou, J, Czyz, D, Willett, J.W, Kim, H.S, Kim, Y, Crosson, S.
Deposit date:2015-12-03
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:WrpA Is an Atypical Flavodoxin Family Protein under Regulatory Control of the Brucella abortus General Stress Response System.
J.Bacteriol., 198, 2016
6V73
DownloadVisualize
BU of 6v73 by Molmil
Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta mercaptoethanol in the active site
Descriptor: BETA-MERCAPTOETHANOL, Beta-lactamase II, CHLORIDE ION, ...
Authors:Maltseva, N, Kim, Y, Clancy, S, Endres, M, Mulligan, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-06
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta mercaptoethanol in the active site
To Be Published
6XKM
DownloadVisualize
BU of 6xkm by Molmil
Room Temperature Structure of SARS-CoV-2 NSP10/NSP16 Methyltransferase in a Complex with SAM Determined by Fixed-Target Serial Crystallography
Descriptor: 2'-O-methyltransferase, CHLORIDE ION, Non-structural protein 10, ...
Authors:Wilamowski, M, Sherrell, D.A, Minasov, G, Kim, Y, Shuvalova, L, Lavens, A, Chard, R, Rosas-Lemus, M, Maltseva, N, Jedrzejczak, R, Michalska, K, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-06-26
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:2'-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography.
Proc.Natl.Acad.Sci.USA, 118, 2021
6W4B
DownloadVisualize
BU of 6w4b by Molmil
The crystal structure of Nsp9 RNA binding protein of SARS CoV-2
Descriptor: Non-structural protein 9
Authors:Tan, K, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-03-10
Release date:2020-03-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The crystal structure of Nsp9 replicase protein of COVID-19
To Be Published

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon