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PDB: 68 results

382D
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BU of 382d by Molmil
HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA.
Descriptor: DNA (5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3'), MAGNESIUM ION
Authors:Mayer-Jung, C, Moras, D, Timsit, Y.
Deposit date:1998-03-02
Release date:1999-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hydration and recognition of methylated CpG steps in DNA.
EMBO J., 17, 1998
383D
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BU of 383d by Molmil
Hydration and recognition of methylated CPG steps in DNA
Descriptor: DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3'), MAGNESIUM ION
Authors:Mayer-Jung, C, Moras, D, Timsit, Y.
Deposit date:1998-03-02
Release date:1998-04-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hydration and Recognition of Methylated Cpg Steps in DNA
Embo J., 17, 1998
329D
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BU of 329d by Molmil
EFFECT OF CYTOSINE METHYLATION ON DNA-DNA RECOGNITION AT CPG STEPS
Descriptor: DNA (5'-D(*AP*CP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*GP*T)-3')
Authors:Mayer-Jung, C, Moras, D, Timsit, Y.
Deposit date:1997-04-29
Release date:1997-04-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Effect of cytosine methylation on DNA-DNA recognition at CpG steps.
J.Mol.Biol., 270, 1997
2BT6
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BU of 2bt6 by Molmil
Ru(bpy)2(mbpy)-Modified Bovine Adrenodoxin
Descriptor: (4'-METHYL-2,2'BIPYRIDINE)BIS(2,2'-BIPYRIDINE), ADRENODOXIN 1, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Halavaty, A, Mueller, J.J, Contzen, J, Jung, C, Hannemann, F, Bernhardt, R, Galander, M, Lendzian, F, Heinemann, U.
Deposit date:2005-05-26
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Light-Induced Reduction of Bovine Adrenodoxin Via the Covalently Bound Ruthenium(II) Bipyridyl Complex: Intramolecular Electron Transfer and Crystal Structure.
Biochemistry, 45, 2006
8GOB
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BU of 8gob by Molmil
Crystal Structure of Glycerol Dehydrogenase in the presence of NAD+
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycerol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Park, T, Hoang, H.N, Kang, J.Y, Park, J, Mun, S.A, Jin, M, Yang, J, Jung, C.-H, Eom, S.H.
Deposit date:2022-08-24
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional insights into the flexible beta-hairpin of glycerol dehydrogenase.
Febs J., 290, 2023
7RPG
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BU of 7rpg by Molmil
X-ray crystal structure of OXA-24/40 K84D in complex with cefotaxime
Descriptor: Beta-lactamase, CEFOTAXIME, C3' cleaved, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RP8
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BU of 7rp8 by Molmil
X-ray crystal structure of OXA-24/40 K84D in complex with imipenem
Descriptor: Beta-lactamase, Imipenem, SULFATE ION
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
3SJV
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BU of 3sjv by Molmil
Crystal structure of the RL42 TCR in complex with HLA-B8-FLR
Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 3, HLA class I histocompatibility antigen, ...
Authors:Gras, S, Wilmann, P.G, Zhenjun, C, Hanim, H, Yu Chih, L, Kjer-Nielsen, L, Purcell, A.W, Burrows, S.R, Mccluskey, J, Rossjohn, J.
Deposit date:2011-06-22
Release date:2012-02-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A structural basis for varied alpha-beta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule.
J.Immunol., 188, 2012
1J90
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BU of 1j90 by Molmil
Crystal Structure of Drosophila Deoxyribonucleoside Kinase
Descriptor: 2'-DEOXYCYTIDINE, Deoxyribonucleoside kinase, SULFATE ION
Authors:Johansson, K, Ramaswamy, S, Ljungkrantz, C, Knecht, W, Piskur, J, Munch-Petersen, B, Eriksson, S, Eklund, H.
Deposit date:2001-05-23
Release date:2001-11-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural basis for substrate specificities of cellular deoxyribonucleoside kinases.
Nat.Struct.Biol., 8, 2001
8GOA
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BU of 8goa by Molmil
Crystal Structure of Glycerol Dehydrogenase in the absence of NAD+
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycerol dehydrogenase, ZINC ION
Authors:Park, T, Hoang, H.N, Kang, J.Y, Park, J, Mun, S.A, Jin, M, Yang, J, Jung, C.-H, Eom, S.H.
Deposit date:2022-08-24
Release date:2023-06-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and functional insights into the flexible beta-hairpin of glycerol dehydrogenase.
Febs J., 290, 2023
7RPC
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BU of 7rpc by Molmil
X-ray crystal structure of OXA-24/40 K84D in complex with ertapenem
Descriptor: (1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RPF
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BU of 7rpf by Molmil
X-ray crystal structure of OXA-24/40 in complex with doripenem
Descriptor: (2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RPE
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BU of 7rpe by Molmil
X-ray crystal structure of OXA-24/40 in complex with ertapenem
Descriptor: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RPD
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X-ray crystal structure of OXA-24/40 V130D in complex with ertapenem
Descriptor: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RPB
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X-ray crystal structure of OXA-24/40 V130D in complex with meropenem
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RPA
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BU of 7rpa by Molmil
X-ray crystal structure of OXA-24/40 K84D in complex with meropenem
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
7RP9
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BU of 7rp9 by Molmil
X-ray crystal structure of OXA-24/40 V130D in complex with imipenem
Descriptor: (2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid, BICARBONATE ION, Beta-lactamase, ...
Authors:Powers, R.A, Mitchell, J.M, June, C.M.
Deposit date:2021-08-03
Release date:2022-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
8SQ8
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BU of 8sq8 by Molmil
X-ray crystal structure of Acinetobacter baumanii beta-lactamase variant OXA-109 in complex with doripenem
Descriptor: (4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase OXA-109
Authors:Powers, R.A, Leonard, D.A, June, C.M, Szarecka, A, Wawrzak, Z.
Deposit date:2023-05-04
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural and Dynamic Features of Acinetobacter baumannii OXA-66 beta-Lactamase Explain Its Stability and Evolution of Novel Variants.
J.Mol.Biol., 436, 2024
8SQ7
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BU of 8sq7 by Molmil
X-ray crystal structure of Acinetobacter baumanii beta-lactamase variant OXA-82 K83D in complex with doripenem
Descriptor: (4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase OXA-82, CITRATE ANION, ...
Authors:Powers, R.A, Leonard, D.A, June, C.M, Szarecka, A, Wawrzak, Z.
Deposit date:2023-05-04
Release date:2024-05-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural and Dynamic Features of Acinetobacter baumannii OXA-66 beta-Lactamase Explain Its Stability and Evolution of Novel Variants.
J.Mol.Biol., 436, 2024
3SKO
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BU of 3sko by Molmil
Crystal structure of the HLA-B8-A66-FLR, mutant A66 of the HLA B8
Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 3, HLA class I histocompatibility antigen, ...
Authors:Gras, S, Wilmann, P.G, Zhenjun, C, Hanim, H, Yu Chih, L, Kjer-Nielsen, L, Purcell, A.W, Burrows, S.R, Mccluskey, J, Rossjohn, J.
Deposit date:2011-06-22
Release date:2012-02-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A structural basis for varied alpha-beta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule.
J.Immunol., 188, 2012
3SKM
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BU of 3skm by Molmil
Crystal structure of the HLA-B8FLRGRAYVL, mutant G8V of the FLR peptide
Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 3, HLA class I histocompatibility antigen, ...
Authors:Gras, S, Wilmann, P.G, Zhenjun, C, Hanim, H, Yu Chih, L, Kjer-Nielsen, L, Purcell, A.W, Burrows, S.R, Mccluskey, J, Rossjohn, J.
Deposit date:2011-06-22
Release date:2012-02-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structural basis for varied alpha-beta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule.
J.Immunol., 188, 2012
3SKN
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BU of 3skn by Molmil
Crystal structure of the RL42 TCR unliganded
Descriptor: RL42 T cell receptor, alpha chain, beta chain
Authors:Gras, S, Wilmann, P.G, Zhenjun, C, Hanim, H, Yu Chih, L, Kjer-Nielsen, L, Purcell, A.W, Burrows, S.R, Mccluskey, J, Rossjohn, J.
Deposit date:2011-06-22
Release date:2012-02-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A structural basis for varied alpha-beta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule.
J.Immunol., 188, 2012
3TIO
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BU of 3tio by Molmil
Crystal structures of yrdA from Escherichia coli, a homologous protein of gamma-class carbonic anhydrase, show possible allosteric conformations
Descriptor: PHOSPHATE ION, Protein YrdA, ZINC ION
Authors:Park, H.M, Choi, J.W, Lee, J.E, Jung, C.H, Kim, B.Y, Kim, J.S.
Deposit date:2011-08-21
Release date:2012-08-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structures of the gamma-class carbonic anhydrase homologue YrdA suggest a possible allosteric switch
Acta Crystallogr.,Sect.D, 68, 2012
6LVO
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BU of 6lvo by Molmil
Enoyl-CoA isomerase (BoECI) from Bosea sp. PAMC 26642
Descriptor: Enoyl-CoA hydratase
Authors:Hwang, J, Jung, C, Lee, C.W, Lee, J.H.
Deposit date:2020-02-04
Release date:2020-04-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural and sequence comparisons of bacterial enoyl-CoA isomerase and enoyl-CoA hydratase.
J.Microbiol, 58, 2020
8FQO
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BU of 8fqo by Molmil
ADC-33 in complex with boronic acid transition state inhibitor MB076
Descriptor: 1-[(2R)-2-{2-[(5-amino-1,3,4-thiadiazol-2-yl)sulfanyl]acetamido}-2-boronoethyl]-1H-1,2,3-triazole-4-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Powers, R.A, Wallar, B.J, June, C.M, Fish, E.R.
Deposit date:2023-01-06
Release date:2023-07-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Synthesis of a Novel Boronic Acid Transition State Inhibitor, MB076: A Heterocyclic Triazole Effectively Inhibits Acinetobacter -Derived Cephalosporinase Variants with an Expanded-Substrate Spectrum.
J.Med.Chem., 66, 2023

226707

數據於2024-10-30公開中

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