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PDB: 108 results

7OX9
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Target-bound SpCas9 complex with AAVS1 all-RNA guide
Descriptor: AAVS1 non-target DNA strand, AAVS1 target DNA strand, CRISPR-associated endonuclease Cas9/Csn1, ...
Authors:Pacesa, M, Donohoue, P, May, A.P, Jinek, M, Cameron, P.
Deposit date:2021-06-22
Release date:2021-09-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell, 81, 2021
8R3Z
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BU of 8r3z by Molmil
Cryo-EM structure of the Asgard archaeal Argonaute HrAgo1 bound to a guide RNA
Descriptor: HrAgo1, MAGNESIUM ION, RNA (5'-R(P*UP*GP*AP*GP*GP*U*(MG))-3')
Authors:Finocchio, G, Swarts, D, Jinek, M.
Deposit date:2023-11-10
Release date:2024-06-19
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:RNA-guided RNA silencing by an Asgard archaeal Argonaute.
Nat Commun, 15, 2024
8QLP
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BU of 8qlp by Molmil
CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex
Descriptor: DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3'), MAGNESIUM ION, RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ...
Authors:Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D.
Deposit date:2023-09-20
Release date:2024-01-31
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
Nucleic Acids Res., 52, 2024
8QLO
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BU of 8qlo by Molmil
CryoEM structure of the apo SPARTA (BabAgo/TIR-APAZ) complex
Descriptor: Short prokaryotic Argonaute, Toll/interleukin-1 receptor domain-containing protein
Authors:Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D.
Deposit date:2023-09-20
Release date:2024-01-31
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
Nucleic Acids Res., 52, 2024
8Q40
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BU of 8q40 by Molmil
Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*CP*A)-3'), DUF1887 family protein, ...
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q42
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BU of 8q42 by Molmil
Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*AP*AP*AP*A)-3'), DUF1887 family protein, ...
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q41
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BU of 8q41 by Molmil
Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*AP*AP*A)-3'), DUF1887 family protein, ...
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q43
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BU of 8q43 by Molmil
Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNA
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*CP*CP*CP*CP*C)-3'), DUF1887 family protein, ...
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q44
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BU of 8q44 by Molmil
Crystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNA
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*T)-3'), DUF1887 family protein, ...
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q3Y
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BU of 8q3y by Molmil
Crystal structure of apo Can2 from Thermoanaerobacter brockii
Descriptor: DUF1887 family protein
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
8Q3Z
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BU of 8q3z by Molmil
Crystal structure of cA4-bound Can2 from Thermoanaerobacter brockii
Descriptor: Cyclic tetraadenosine monophosphate (cA4), DUF1887 family protein, MANGANESE (II) ION
Authors:Jungfer, K, Sigg, A, Jinek, M.
Deposit date:2023-08-04
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.
Nucleic Acids Res., 52, 2024
7OXD
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BU of 7oxd by Molmil
Crystal structure of Scytonema hofmanni transposition protein TniQ
Descriptor: ShTniQ, ZINC ION
Authors:Querques, I, Jinek, M.
Deposit date:2021-06-22
Release date:2021-12-01
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Target site selection and remodelling by type V CRISPR-transposon systems.
Nature, 599, 2021
7P3A
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BU of 7p3a by Molmil
N-terminal domain of CGI-99
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ISOPROPYL ALCOHOL, ...
Authors:Kroupova, A, Jinek, M.
Deposit date:2021-07-07
Release date:2021-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular architecture of the human tRNA ligase complex.
Elife, 10, 2021
7P3B
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BU of 7p3b by Molmil
Human RNA ligase RTCB in complex with GMP and Co(II)
Descriptor: ACETATE ION, COBALT (II) ION, FORMIC ACID, ...
Authors:Kroupova, A, Ackle, F, Jinek, M.
Deposit date:2021-07-07
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular architecture of the human tRNA ligase complex.
Elife, 10, 2021
3P2Q
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BU of 3p2q by Molmil
Crystal structure of the fluoroacetyl-CoA-specific thioesterase, FlK
Descriptor: Fluoroacetyl coenzyme A thioesterase
Authors:Weeks, A.M, Coyle, S.M, Jinek, M, Doudna, J.A, Chang, M.C.Y.
Deposit date:2010-10-03
Release date:2010-10-20
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.
Biochemistry, 49, 2010
3P3F
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BU of 3p3f by Molmil
Crystal structure of the F36A mutant of the fluoroacetyl-CoA-specific thioesterase FlK
Descriptor: Fluoroacetyl coenzyme A thioesterase
Authors:Weeks, A.M, Coyle, S.M, Jinek, M, Doudna, J.A, Chang, M.C.Y.
Deposit date:2010-10-04
Release date:2010-10-20
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.
Biochemistry, 49, 2010
7PLA
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BU of 7pla by Molmil
Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target
Descriptor: DNA non-target strand, DNA target strand, ShCas12k, ...
Authors:Schmitz, M, Jinek, M.
Deposit date:2021-08-30
Release date:2021-12-01
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Target site selection and remodelling by type V CRISPR-transposon systems.
Nature, 599, 2021
7PLH
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BU of 7plh by Molmil
Scytonema hofmannii TnsC bound to AMPPNP and DNA
Descriptor: DNA (5'-D(P*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'), MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Querques, I, Jinek, M.
Deposit date:2021-08-31
Release date:2021-12-01
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Target site selection and remodelling by type V CRISPR-transposon systems.
Nature, 599, 2021
3P3I
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BU of 3p3i by Molmil
Crystal structure of the F36A mutant of the fluoroacetyl-CoA-specific thioesterase FlK in complex with fluoroacetate and CoA
Descriptor: COENZYME A, Fluoroacetyl coenzyme A thioesterase, fluoroacetic acid
Authors:Weeks, A.M, Coyle, S.M, Jinek, M, Doudna, J.A, Chang, M.C.Y.
Deposit date:2010-10-04
Release date:2010-10-20
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.
Biochemistry, 49, 2010
3P2R
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BU of 3p2r by Molmil
Crystal structure of the fluoroacetyl-CoA-specific thioesterase FlK in complex with fluoroacetate
Descriptor: Fluoroacetyl coenzyme A thioesterase, fluoroacetic acid
Authors:Weeks, A.M, Coyle, S.M, Jinek, M, Doudna, J.A, Chang, M.C.Y.
Deposit date:2010-10-03
Release date:2010-10-20
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.
Biochemistry, 49, 2010
3P2S
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BU of 3p2s by Molmil
Crystal structure of the fluoroacetyl-CoA-specific thioesterase FlK in an open conformation
Descriptor: Fluoroacetyl coenzyme A thioesterase
Authors:Weeks, A.M, Coyle, S.M, Jinek, M, Doudna, J.A, Chang, M.C.Y.
Deposit date:2010-10-04
Release date:2010-10-20
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.
Biochemistry, 49, 2010
6F9W
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BU of 6f9w by Molmil
Crystal structure of the LSM domain of LSM14 in complex with a C-terminal peptide of 4E-T
Descriptor: Eukaryotic translation initiation factor 4E transporter, Protein LSM14 homolog A
Authors:Brandmann, T, Jinek, M.
Deposit date:2017-12-15
Release date:2018-03-21
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes.
EMBO J., 37, 2018
5FW1
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BU of 5fw1 by Molmil
Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, NON-TARGET DNA STRAND, ...
Authors:Anders, C, Bargsten, K, Jinek, M.
Deposit date:2016-02-11
Release date:2016-04-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell, 61, 2016
5FSH
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BU of 5fsh by Molmil
Crystal structure of Thermus thermophilus Csm6
Descriptor: CSM6, NICKEL (II) ION
Authors:Niewoehner, O, Jinek, M.
Deposit date:2016-01-06
Release date:2016-01-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural Basis for the Endoribonuclease Activity of the Type III-A Crispr-Associated Protein Csm6.
RNA, 22, 2016
5FW3
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BU of 5fw3 by Molmil
Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, NON-TARGET DNA STRAND, ...
Authors:Anders, C, Bargsten, K, Jinek, M.
Deposit date:2016-02-11
Release date:2016-06-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell, 61, 2016

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PDB entries from 2024-10-16

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