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PDB: 58 件

9C7B
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Crystal structure of R150H neurodevelopmental disease-associated U2AF2 variant
分子名称: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit
著者Maji, D, Jenkins, J.L, Kielkopf, C.L.
登録日2024-06-10
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Recurrent neurodevelopmentally-associated variants of the pre-mRNA splicing factor U2AF2 alter RNA binding affinities and interactions
To Be Published
3Q51
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BU of 3q51 by Molmil
Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.
分子名称: MAGNESIUM ION, PREQ1 RIBOSWITCH, SULFATE ION
著者Wedekind, J.E, Jenkins, J.L, Krucinska, J.
登録日2010-12-26
公開日2011-05-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.
J.Biol.Chem., 286, 2011
8VPV
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Class III PreQ1 riboswitch mutant delta84
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, RNA (101-MER)
著者Srivastava, Y, Jenkins, J.L, Wedekind, J.E.
登録日2024-01-17
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献New insights into Class III PreQ1 metabolite binding
To Be Published
5EV1
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Structure I of Intact U2AF65 Recognizing a 3' Splice Site Signal
分子名称: DI(HYDROXYETHYL)ETHER, DNA/RNA (5'-R(*UP*UP*U)-D(P*UP*UP*(BRU)P*U)-R(P*UP*U)-3'), SODIUM ION, ...
著者Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L.
登録日2015-11-19
公開日2016-02-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.037 Å)
主引用文献An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal.
Nat Commun, 7, 2016
5EV2
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Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal
分子名称: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, DNA (5'-R(P*UP*U)-D(P*UP*U)-R(P*U)-D(P*UP*(BRU)P*U)-3'), ...
著者Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L.
登録日2015-11-19
公開日2016-02-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal.
Nat Commun, 7, 2016
5EV3
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Structure III of Intact U2AF65 Recognizing the 3' Splice Site Signal
分子名称: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU)P*UP*U)-3'), Splicing factor U2AF 65 kDa subunit
著者Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L.
登録日2015-11-19
公開日2016-02-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal.
Nat Commun, 7, 2016
5EV4
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Structure IV of Intact U2AF65 Recognizing the 3' Splice Site Signal
分子名称: DNA/RNA (5'-R(P*UP*UP*UP*(UD)P*UP*U)-D(P*(BRU)P*(UD))-R(P*C)-3'), GLYCEROL, Splicing factor U2AF 65 kDa subunit
著者Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L.
登録日2015-11-19
公開日2016-02-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal.
Nat Commun, 7, 2016
6PJV
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Structure of Human Sonic Hedgehog in complex with Zinc and Magnesium
分子名称: CHLORIDE ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Bonn-Breach, R.B, Jenkins, J.L, Wedekind, J.E.
登録日2019-06-28
公開日2019-11-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Structure of Sonic Hedgehog protein in complex with zinc(II) and magnesium(II) reveals ion-coordination plasticity relevant to peptide drug design.
Acta Crystallogr D Struct Biol, 75, 2019
1JN4
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The Crystal Structure of Ribonuclease A in complex with 2'-deoxyuridine 3'-pyrophosphate (P'-5') adenosine
分子名称: ADENOSINE-5'-[TRIHYDROGEN DIPHOSPHATE] P'-3'-ESTER WITH 2'-DEOXYURIDINE, Pancreatic Ribonuclease A
著者Jardine, A.M, Leonidas, D.D, Jenkins, J.L, Park, C, Raines, R.T, Acharya, K.R, Shapiro, R.
登録日2001-07-23
公開日2003-06-03
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Cleavage of 3',5'-Pyrophosphate-Linked Dinucleotides by Ribonuclease A and Angiogenin
Biochemistry, 40, 2001
8TOZ
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Class III PreQ1 riboswitch double mutant U8C/A85G
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, Class-III preQ1 riboswitch
著者Srivastava, Y, Jenkins, J.L, Wedekind, J.E.
登録日2023-08-04
公開日2024-08-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献New insights into Class III PreQ1 metabolite binding
To Be Published
4G6R
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Minimal Hairpin Ribozyme in the Transition State with G8I Variation
分子名称: Loop A Ribozyme strand, Loop A Substrate strand, Loop B Ribozyme Strand, ...
著者Liberman, J.A, Jenkins, J.L, Krucinska, J, Wedekind, J.E.
登録日2012-07-19
公開日2012-08-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.832 Å)
主引用文献A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis.
J.Am.Chem.Soc., 134, 2012
4G6P
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Minimal Hairpin Ribozyme in the Precatalytic State with A38P Variation
分子名称: COBALT HEXAMMINE(III), Loop A Substrate strand, Loop A and Loop B Ribozyme strand, ...
著者Liberman, J.A, Jenkins, J.L, Krucinska, J, Wedekind, J.E.
登録日2012-07-19
公開日2012-08-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.641 Å)
主引用文献A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis.
J.Am.Chem.Soc., 134, 2012
4G6S
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BU of 4g6s by Molmil
Minimal Hairpin Ribozyme in the Transition State with A38P Variation
分子名称: COBALT HEXAMMINE(III), Loop A Substrate strand, Loop A and Loop B Ribozyme strand, ...
著者Liberman, J.A, Jenkins, J.L, Krucinska, J, Wedekind, J.E.
登録日2012-07-19
公開日2012-08-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis.
J.Am.Chem.Soc., 134, 2012
2AY0
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BU of 2ay0 by Molmil
Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.
分子名称: Bifunctional putA protein, CHLORIDE ION
著者Larson, J.D, Schuermann, J.P, Zhou, Y, Jenkins, J.L, Becker, D.F, Tanner, J.J.
登録日2005-09-06
公開日2006-08-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition.
Protein Sci., 15, 2006
8FB3
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PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MAGNESIUM ION, RNA (34-MER) Riboswitch
著者Wedekind, J.E, Schroeder, G.M, Jenkins, J.L.
登録日2022-11-29
公開日2023-02-22
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A riboswitch separated from its ribosome-binding site still regulates translation.
Nucleic Acids Res., 51, 2023
6N3D
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BU of 6n3d by Molmil
Structure of HIV Tat-specific factor 1 U2AF Homology Motif (APO-State)
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Loerch, S, Jenkins, J.L, Kielkopf, C.L.
登録日2018-11-15
公開日2019-01-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.
J. Biol. Chem., 294, 2019
6N3E
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BU of 6n3e by Molmil
Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to U2AF ligand motif 4
分子名称: FORMIC ACID, GLYCEROL, HIV Tat-specific factor 1, ...
著者Loerch, S, Jenkins, J.L, Kielkopf, C.L.
登録日2018-11-15
公開日2019-01-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.893 Å)
主引用文献The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.
J. Biol. Chem., 294, 2019
6N3F
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BU of 6n3f by Molmil
Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to SF3b1 ULM5
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, HIV Tat-specific factor 1, ...
著者Leach, J.R, Jenkins, J.L, Kielkopf, C.L.
登録日2018-11-15
公開日2019-01-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.
J. Biol. Chem., 294, 2019
6XH3
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BU of 6xh3 by Molmil
Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.3
分子名称: TAR BINDING PROTEIN TBP 6.3, TRANS-ACTIVATION RESPONSE ELEMENT
著者Chavali, S.S, Jenkins, J.L, Wedekind, J.E.
登録日2020-06-18
公開日2020-10-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.353 Å)
主引用文献Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem., 295, 2020
6XH2
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BU of 6xh2 by Molmil
Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM 6.6
分子名称: TAR-BINDING PROTEIN 6.6, TRANS-ACTIVATION RESPONSE ELEMENT
著者Chavali, S.S, Jenkins, J.L, Wedekind, J.E.
登録日2020-06-18
公開日2020-10-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem., 295, 2020
6XLX
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Crystal structure of cancer-associated G301D mutant of U2AF65 bound to AdML splice site
分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit
著者Maji, D, Jenkins, J.L, Kielkopf, C.L.
登録日2020-06-29
公開日2020-10-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing.
J.Biol.Chem., 295, 2020
6XKN
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Class III PreQ1 riboswitch mutant A52G
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, Class III PreQ1 riboswitch
著者Srivastava, K.Y, Jenkins, J.L, Wedekind, J.E.
登録日2020-06-26
公開日2021-12-29
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献New insights into Class III PreQ1 metabolite binding
To Be Published
6XKO
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Class III PreQ1 riboswitch mutant A84G
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, Class III PreQ1 riboswitch
著者Srivastava, K.Y, Jenkins, J.L, Wedekind, J.E.
登録日2020-06-26
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献New insights into Class III PreQ1 metabolite binding
To Be Published
6XH0
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Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.9
分子名称: MAGNESIUM ION, TAR binding protein 6.9, TRANS-ACTIVATION RESPONSE ELEMENT
著者Chavali, S.S, Jenkins, J.L, Wedekind, J.E.
登録日2020-06-18
公開日2020-10-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem., 295, 2020
6XLV
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Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site
分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit
著者Maji, D, Jenkins, J.L, Kielkopf, C.L.
登録日2020-06-29
公開日2020-10-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing.
J.Biol.Chem., 295, 2020

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