Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2886 results

6VWV
DownloadVisualize
BU of 6vwv by Molmil
Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding
Descriptor: ADENINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2020-02-20
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Nat Commun, 12, 2021
7O7L
DownloadVisualize
BU of 7o7l by Molmil
(h-alpha2M)4 native I
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-2-macroglobulin, ...
Authors:Luque, D, Goulas, T, Mata, C.P, Mendes, S.R, Gomis-Ruth, F.X, Caston, J.R.
Deposit date:2021-04-13
Release date:2022-04-20
Last modified:2022-05-11
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structures show the mechanistic basis of pan-peptidase inhibition by human alpha 2 -macroglobulin.
Proc.Natl.Acad.Sci.USA, 119, 2022
6VL1
DownloadVisualize
BU of 6vl1 by Molmil
Crystal Structure of the N-prenyltransferase DabA in Complex with NGG and Mg2+
Descriptor: DabA, MAGNESIUM ION, N-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-L-glutamic acid
Authors:Chekan, J.R, Noel, J.P, Moore, B.S.
Deposit date:2020-01-22
Release date:2020-04-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Algal neurotoxin biosynthesis repurposes the terpene cyclase structural fold into anN-prenyltransferase.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VKZ
DownloadVisualize
BU of 6vkz by Molmil
Crystal Structure of the N-prenyltransferase DabA in Complex with GSPP and Mg2+
Descriptor: DabA, GERANYL S-THIOLODIPHOSPHATE, MAGNESIUM ION
Authors:Chekan, J.R, Noel, J.P, Moore, B.S.
Deposit date:2020-01-22
Release date:2020-04-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Algal neurotoxin biosynthesis repurposes the terpene cyclase structural fold into anN-prenyltransferase.
Proc.Natl.Acad.Sci.USA, 117, 2020
4HG2
DownloadVisualize
BU of 4hg2 by Molmil
The Structure of a Putative Type II Methyltransferase from Anaeromyxobacter dehalogenans.
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Methyltransferase type 11
Authors:Cuff, M.E, Chhor, G, Clancy, S, Brown, R.N, Cort, J.R, Heffron, F, Nakayasu, E.S, Adkins, J.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2012-10-05
Release date:2012-10-17
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Structure of a Putative Type II Methyltransferase from Anaeromyxobacter dehalogenans.
TO BE PUBLISHED
1CPB
DownloadVisualize
BU of 1cpb by Molmil
STRUCTURE OF CARBOXYPEPTIDASE B AT 2.8 ANGSTROMS RESOLUTION
Descriptor: CARBOXYPEPTIDASE B
Authors:Schmid, M.F, Herriott, J.R.
Deposit date:1976-06-23
Release date:1977-11-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of carboxypeptidase B at 2-8 A resolution.
J.Mol.Biol., 103, 1976
5CUR
DownloadVisualize
BU of 5cur by Molmil
G158E/K44E/R57E/Y49E Bacillus subtilis lipase A with 20% [BMIM][Cl]
Descriptor: 1-butyl-3-methyl-1H-imidazol-3-ium, CHLORIDE ION, Esterase
Authors:Nordwald, E.M, Plaks, J.G, Snell, J.R, Sousa, M.C, Kaar, J.L.
Deposit date:2015-07-24
Release date:2015-11-04
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Crystallographic Investigation of Imidazolium Ionic Liquid Effects on Enzyme Structure.
Chembiochem, 16, 2015
5CXS
DownloadVisualize
BU of 5cxs by Molmil
Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase complexed with MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Purine nucleoside phosphorylase
Authors:Torini, J.R, Romanello, L, Bird, L, Owens, R, Brandao-Neto, J, Pereira, H.M.
Deposit date:2015-07-29
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The molecular structure of Schistosoma mansoni PNP isoform 2 provides insights into the nucleoside selectivity of PNPs.
PLoS ONE, 13, 2018
4HX6
DownloadVisualize
BU of 4hx6 by Molmil
Streptomyces globisporus C-1027 NADH:FAD oxidoreductase SgcE6
Descriptor: ACETATE ION, Oxidoreductase, SULFATE ION
Authors:Tan, K, Bigelow, L, Clancy, S, Babnigg, G, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2012-11-09
Release date:2012-11-28
Last modified:2016-12-07
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus.
Biochemistry, 55, 2016
4JHO
DownloadVisualize
BU of 4jho by Molmil
Structural analysis and insights into glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-mannosidase/beta-glucosidase, GLYCEROL
Authors:Tankrathok, A, Luang, S, Robinson, R.C, Kimura, A, Hrmova, M, Ketudat Cairns, J.R.
Deposit date:2013-03-05
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase
Acta Crystallogr.,Sect.D, 69, 2013
7MF3
DownloadVisualize
BU of 7mf3 by Molmil
Structure of the autoinhibited state of smooth muscle myosin-2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Myosin light polypeptide 6, ...
Authors:Heissler, S.M, Arora, A.S, Billington, N, Sellers, J.R, Chinthalapudi, K.
Deposit date:2021-04-08
Release date:2022-01-05
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of the autoinhibited state of myosin-2.
Sci Adv, 7, 2021
6VWT
DownloadVisualize
BU of 6vwt by Molmil
Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding
Descriptor: ADENINE, MAGNESIUM ION, adenine riboswitch aptamer variant
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2020-02-20
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Nat Commun, 12, 2021
5DVM
DownloadVisualize
BU of 5dvm by Molmil
Fc Design 20.8.37 B chain homodimer E357D/S364R/Y407A
Descriptor: Fc-III peptide, Ig gamma-1 chain C region
Authors:Atwell, S, Leaver-Fay, A, Froning, K.J, Aldaz, H, Pustilnik, A, Lu, F, Huang, F, Yuan, R, Dhanani, S.H, Chamberlain, A.K, Fitchett, J.R, Gutierrez, B, Hendle, J, Demarest, S.J, Kuhlman, B.
Deposit date:2015-09-21
Release date:2016-03-30
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Computationally Designed Bispecific Antibodies using Negative State Repertoires.
Structure, 24, 2016
5DW6
DownloadVisualize
BU of 5dw6 by Molmil
Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propyl-R-pantothenamide))pyrophosphate (MX)
Descriptor: ACETATE ION, IMIDAZOLE, Succinyl-CoA:acetate CoA-transferase, ...
Authors:Kappock, T.J, Murphy, J.R.
Deposit date:2015-09-22
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.548 Å)
Cite:Functional Dissection of the Bipartite Active Site of the Class I Coenzyme A (CoA)-Transferase Succinyl-CoA:Acetate CoA-Transferase.
Front Chem, 4, 2016
5DI8
DownloadVisualize
BU of 5di8 by Molmil
Fc Knob-Hole Heterodimer T366W + T366S/L368A/Y407V
Descriptor: Fc-III peptide, Ig gamma-1 chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Atwell, S, Leaver-Fay, A, Froning, K.J, Aldaz, H, Pustilnik, A, Lu, F, Huang, F, Yuan, R, Dhanani, S.H, Chamberlain, A.K, Fitchett, J.R, Gutierrez, B, Hendle, J, Secrist, E, Demarest, S.J, Kuhlman, B.
Deposit date:2015-08-31
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computationally Designed Bispecific Antibodies using Negative State Repertoires.
Structure, 24, 2016
5DJ0
DownloadVisualize
BU of 5dj0 by Molmil
Fc Heterodimer Design 11.2 Y349S/K370Y + E357D/S364Q
Descriptor: Fc-III peptide, Ig gamma-1 chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Atwell, S, Leaver-Fay, A, Froning, K.J, Aldaz, H, Pustilnik, A, Lu, F, Huang, F, Yuan, R, Dhanani, S.H, Chamberlain, A.K, Fitchett, J.R, Gutierrez, B, Hendle, J, Demarest, S.J, Kuhlman, B.
Deposit date:2015-09-01
Release date:2016-03-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Computationally Designed Bispecific Antibodies using Negative State Repertoires.
Structure, 24, 2016
7NW3
DownloadVisualize
BU of 7nw3 by Molmil
X-ray crystallographic study of PIYDIN, which contains the truncation determinants of binding PI and N, bound to RoAb13, a CCR5 antibody
Descriptor: Antibody RoAb13 Heavy Chain, Antibody RoAb13 Light Chain, Region from C-C chemokine receptor type 5 N-terminal domain
Authors:Saridakis, E, Helliwell, J.R, Govada, L, Chayen, N.E.
Deposit date:2021-03-16
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.200011 Å)
Cite:X-ray crystallographic studies of RoAb13 bound to PIYDIN, a part of the N-terminal domain of C-C chemokine receptor 5.
Iucrj, 8, 2021
5CXQ
DownloadVisualize
BU of 5cxq by Molmil
Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in APO form
Descriptor: Purine nucleoside phosphorylase
Authors:Torini, J.R, Romanello, L, Bird, L, Owens, R, Brandao-Neto, J, Pereira, H.M.
Deposit date:2015-07-29
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:The molecular structure of Schistosoma mansoni PNP isoform 2 provides insights into the nucleoside selectivity of PNPs.
PLoS ONE, 13, 2018
4LT2
DownloadVisualize
BU of 4lt2 by Molmil
HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the EVAL software package
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DIMETHYL SULFOXIDE, Lysozyme C, ...
Authors:Tanley, S.W.M, Diederichs, K, Kroon-Batenburg, L.M.J, Schreurs, A.M.M, Helliwell, J.R.
Deposit date:2013-07-23
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Carboplatin binding to a model protein in non-NaCl conditions to eliminate partial conversion to cisplatin, and the use of different criteria to choose the resolution limit
To be Published
4MGS
DownloadVisualize
BU of 4mgs by Molmil
BiXyn10A CBM1 APO
Descriptor: Putative glycosyl hydrolase family 10
Authors:Chekan, J.R, Nair, S.K.
Deposit date:2013-08-28
Release date:2014-08-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes.
Proc.Natl.Acad.Sci.USA, 111, 2014
5CT5
DownloadVisualize
BU of 5ct5 by Molmil
Wild-type Bacillus subtilis lipase A with 10% [BMIM][Cl]
Descriptor: 1-butyl-3-methyl-1H-imidazol-3-ium, CHLORIDE ION, SULFATE ION, ...
Authors:Nordwald, E.M, Plaks, J.G, Snell, J.R, Sousa, M.C, Kaar, J.L.
Deposit date:2015-07-23
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Crystallographic Investigation of Imidazolium Ionic Liquid Effects on Enzyme Structure.
Chembiochem, 16, 2015
7NT8
DownloadVisualize
BU of 7nt8 by Molmil
Influenza virus H3N2 nucleoprotein - R416A mutant
Descriptor: Glutathione S-transferase class-mu 26 kDa isozyme,Nucleoprotein
Authors:Keown, J.R, Knight, M.L, Grimes, J.M, Fodor, E.
Deposit date:2021-03-09
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure of an H3N2 influenza virus nucleoprotein.
Acta Crystallogr.,Sect.F, 77, 2021
4HZP
DownloadVisualize
BU of 4hzp by Molmil
The Structure of the Bifunctional Acetyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double Hot Dog Fold
Descriptor: Bifunctional methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase, CHLORIDE ION, COENZYME A, ...
Authors:Lohman, J.R, Bingman, C.A, Phillips Jr, G.N, Shen, B, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2012-11-15
Release date:2013-01-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of the Bifunctional Acyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double-Hot-Dog Fold.
Biochemistry, 52, 2013
4LK4
DownloadVisualize
BU of 4lk4 by Molmil
Structure of Vibrio cholerae VesB protease
Descriptor: VESB protease
Authors:Korotkov, K.V, Delarosa, J.R, Hol, W.G.J.
Deposit date:2013-07-05
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Functional and Structural Characterization of Vibrio cholerae Extracellular Serine Protease B, VesB.
J.Biol.Chem., 289, 2014
5A42
DownloadVisualize
BU of 5a42 by Molmil
Cryo-EM single particle 3D reconstruction of the native conformation of E. coli alpha-2-macroglobulin (ECAM)
Descriptor: UNCHARACTERIZED LIPOPROTEIN YFHM
Authors:Garcia-Ferrer, I, Arede, P, Gomez-Blanco, J, Luque, D, Duquerroy, S, Caston, J.R, Goulas, T, Gomis-Ruth, F.X.
Deposit date:2015-06-04
Release date:2015-07-29
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structural and Functional Insights Into Escherichia Coli Alpha2- Macroglobulin Endopeptidase Snap-Trap Inhibition.
Proc.Natl.Acad.Sci.USA, 112, 2015

223166

數據於2024-07-31公開中

PDB statisticsPDBj update infoContact PDBjnumon