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PDB: 3272 results

2W6N
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BU of 2w6n by Molmil
Crystal structure of Biotin carboxylase from E. coli in complex with amino-oxazole fragment series
Descriptor: 2-AMINO-N,N-BIS(PHENYLMETHYL)-1,3-OXAZOLE-5-CARBOXAMIDE, BIOTIN CARBOXYLASE, CHLORIDE ION
Authors:Mochalkin, I, Miller, J.R.
Deposit date:2008-12-18
Release date:2009-05-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Discovery of Antibacterial Biotin Carboxylase Inhibitors by Virtual Screening and Fragment-Based Approaches.
Acs Chem.Biol., 4, 2009
2PI4
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BU of 2pi4 by Molmil
T7RNAP complexed with a phi10 protein and initiating GTPs.
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*TP*TP*CP*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', ...
Authors:Kennedy, W.P, Momand, J.R, Yin, Y.W.
Deposit date:2007-04-12
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase.
J.Mol.Biol., 370, 2007
6WJS
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BU of 6wjs by Molmil
Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate
Descriptor: PHOSPHATE ION, RNA (112-MER)
Authors:Wilt, H.M, Wang, Y.-X, Stagno, J.R.
Deposit date:2020-04-14
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
J Struct Biol X, 4, 2020
2VYQ
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BU of 2vyq by Molmil
FERREDOXIN:NADP REDUCTASE MUTANT WITH THR 155 REPLACED BY GLY, ALA 160 REPLACED BY THR, LEU 263 REPLACED BY PRO AND TYR 303 REPLACED BY SER (T155G-A160T-L263P-Y303S)
Descriptor: FERREDOXIN-NADP REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Herguedas, B, Martinez-Julvez, M, Hermoso, J.A, Peregrina, J.R, Medina, M.
Deposit date:2008-07-28
Release date:2009-04-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein Motifs Involved in Coenzyme Interaction and Enzymatic Efficiency in Anabaena Ferredoxin-Nadp+ Reductase.
Biochemistry, 48, 2009
3NPL
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BU of 3npl by Molmil
Structure of Ru(bpy)2(A-Phen)(K97C) P450 BM3 heme domain, a ruthenium modified P450 BM3 mutant
Descriptor: Bifunctional P-450/NADPH-P450 reductase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Ener, M, Lee, Y.-T, Goodin, D.B, Winkler, J.R, Gray, H.B, Cheruzel, L.
Deposit date:2010-06-28
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Ru(bpy)2(A-Phen)(K97C) P450 BM3 heme domain, a ruthenium modified P450 BM3 mutant
To be Published
2X62
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BU of 2x62 by Molmil
CRYSTAL STRUCTURE OF THE SIALYLTRANSFERASE CST-II Y81F IN COMPLEX WITH CMP
Descriptor: 1,2-ETHANEDIOL, ALPHA-2,3-/2,8-SIALYLTRANSFERASE, N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
Authors:Lee, H.J, Lairson, L.L, Rich, J.R, Wakarchuk, W.W, Withers, S.G, Strynadka, N.C.J.
Deposit date:2010-02-14
Release date:2011-02-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Kinetic Analysis of Substrate Binding to the Sialyltransferase Cst-II from Campylobacter Jejuni.
J.Biol.Chem., 286, 2011
2OSA
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BU of 2osa by Molmil
The Rho-GAP domain of human N-chimaerin
Descriptor: N-chimaerin
Authors:Walker, J.R, Hong, B.S, Shen, L, Arrowsmith, C.H, Sundstrom, M, Weigelt, J, Edwards, A.M, Bochkarev, A, Park, H.W, Structural Genomics Consortium (SGC)
Deposit date:2007-02-05
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the Rho-GAP domain from human N-chimaerin
To be Published
2WYJ
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BU of 2wyj by Molmil
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with monoaryl P4 motifs
Descriptor: (E)-2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-{4-[(1S)-1-(DIMETHYLAMINO)ETHYL]-2-FLUOROPHENYL}-2-OXOPYRROLIDIN-3-YL]ETHENESULFONAMIDE, ACTIVATED FACTOR XA HEAVY CHAIN, FACTOR X LIGHT CHAIN
Authors:Kleanthous, S, Borthwick, A.D, Brown, D, Burns-Kurtis, C.L, Campbell, M, Chaudry, L, Chan, C, Clarte, M, Convery, M.A, Harling, J.D, Hortense, E, Irving, W.R, Irvine, S, Pateman, A.J, Patikis, A, Pinto, I.L, Pollard, D.R, Roethka, T.J, Senger, S, Shah, G.P, Stelman, G.J, Toomey, J.R, Watson, N.S, Whittaker, C, Zhou, P, Young, R.J.
Deposit date:2009-11-16
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Monoaryl P4 Motifs
Bioorg.Med.Chem.Lett., 20, 2010
3P1I
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BU of 3p1i by Molmil
Ligand binding domain of human ephrin type-B receptor 3
Descriptor: CHLORIDE ION, Ephrin type-B receptor 3, SULFATE ION
Authors:Walker, J.R, Yermekbayeva, L, Seitova, A, Kania, J, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2010-09-30
Release date:2011-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand Binding Domain of Human Ephb3
To be Published
6WIA
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BU of 6wia by Molmil
CRYSTAL STRUCTURE OF HUMAN PROTECTIVE PROTEIN/CATHEPSIN A, DFP-INHIBITED (AGED)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CADMIUM ION, ...
Authors:Compton, J.R, Legler, P.M.
Deposit date:2020-04-09
Release date:2020-04-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural and kinetic evidence of aging after organophosphate inhibition of human Cathepsin A.
Biochem. Pharmacol., 177, 2020
2VH6
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BU of 2vh6 by Molmil
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with biaryl P4 motifs
Descriptor: 2-(5-chlorothiophen-2-yl)-N-{(3S)-1-[3-fluoro-2'-(methylsulfonyl)biphenyl-4-yl]-2-oxopyrrolidin-3-yl}ethanesulfonamide, ACTIVATED FACTOR XA HEAVY CHAIN, ACTIVATED FACTOR XA LIGHT CHAIN
Authors:Young, R.J, Borthwick, A.D, Brown, D, Burns-Kurtis, C.L, Campbell, M, Chan, C, Charbaut, M, Chung, C.W, Convery, M.A, Kelly, H.A, King, N.P, Kleanthous, S, Mason, A.M, Pateman, A.J, Patikis, A.N, Pinto, I.L, Pollard, D.R, Senger, S, Shah, G.P, Toomey, J.R, Watson, N.S, Weston, H.E.
Deposit date:2007-11-19
Release date:2008-12-16
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Biaryl P4 Motifs.
Bioorg.Med.Chem.Lett., 18, 2008
2VB0
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BU of 2vb0 by Molmil
Crystal structure of coxsackievirus B3 proteinase 3C
Descriptor: CHLORIDE ION, POLYPROTEIN 3BCD
Authors:Anand, K, Mesters, J.R, Goerlach, R, Zell, R, Hilgenfeld, R.
Deposit date:2007-09-05
Release date:2008-10-28
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Coxsackie Virus B3 Proteinase 3C
To be Published
2Q20
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BU of 2q20 by Molmil
Structure of the germline Vk1 O18/O8 light chain variable domain homodimer
Descriptor: Vk1 O18/O8 germline light chain variable domain
Authors:Thompson, J.R, Ramirez-Alvarado, M, Baden, E.M.
Deposit date:2007-05-25
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Altered dimer interface decreases stability in an amyloidogenic protein.
J.Biol.Chem., 283, 2008
2Q2G
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BU of 2q2g by Molmil
Crystal structure of dimerization domain of HSP40 from Cryptosporidium parvum, cgd2_1800
Descriptor: Heat shock 40 kDa protein, putative (fragment), SULFATE ION
Authors:Wernimont, A.K, Lew, J, Lin, L, Hassanali, A, Kozieradzki, I, Wasney, G, Vedadi, M, Walker, J.R, Zhao, Y, Schapira, M, Bochkarev, A, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Hui, R, Brokx, S, Structural Genomics Consortium (SGC)
Deposit date:2007-05-28
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of dimerization domain of HSP40 from Cryptosporidium parvum, cgd2_1800.
To be Published
2X3U
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BU of 2x3u by Molmil
Ferredoxin-NADP reductase mutant with Tyr 303 replaced by Phe (Y303F)
Descriptor: FERREDOXIN-NADP REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Herguedas, B, Martinez-Julvez, M, Hermoso, J.A, Peregrina, J.R, Sanchez-Azqueta, A, Medina, M.
Deposit date:2010-01-27
Release date:2010-05-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Role of Specific Residues in Coenzyme Binding, Charge-Transfer Complex Formation, and Catalysis in Anabaena Ferredoxin Nadp(+)-Reductase.
Biochim.Biophys.Acta, 1797, 2010
3MHU
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BU of 3mhu by Molmil
Crystal structure of dihydroorotate dehydrogenase from Leishmania major in complex with 5-Nitroorotic acid
Descriptor: 5-nitro-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid, Dihydroorotate dehydrogenase, FLAVIN MONONUCLEOTIDE, ...
Authors:Pinheiro, M.P, Rocha, J.R, Cheleski, J, Montanari, C.A, Nonato, M.C.
Deposit date:2010-04-08
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Novel insights for dihydroorotate dehydrogenase class 1A inhibitors discovery.
Eur.J.Med.Chem., 45, 2010
2P82
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BU of 2p82 by Molmil
Cysteine protease ATG4A
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Cysteine protease ATG4A
Authors:Walker, J.R, Davis, T, Mujib, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-03-21
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Human cysteine protease ATG4A
To be Published
2PNY
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BU of 2pny by Molmil
Structure of Human Isopentenyl-diphosphate Delta-isomerase 2
Descriptor: CALCIUM ION, GLYCEROL, Isopentenyl-diphosphate Delta-isomerase 2, ...
Authors:Walker, J.R, Davis, T, Butler-Cole, C, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-04-25
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure of the human Isopentenyl-diphosphate Delta-isomerase 2.
To be Published
2PI5
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BU of 2pi5 by Molmil
T7 RNA polymerase complexed with a phi10 promoter
Descriptor: 5'-D(*CP*TP*TP*C*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', DNA-directed RNA polymerase
Authors:Kennedy, W.P, Momand, J.R, Yin, Y.W.
Deposit date:2007-04-12
Release date:2007-06-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase.
J.Mol.Biol., 370, 2007
2X77
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BU of 2x77 by Molmil
Crystal Structure of Leishmania major ADP ribosylation factor-like 1.
Descriptor: ADP-RIBOSYLATION FACTOR, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Fleming, J.R, Dawson, A, Hunter, W.N.
Deposit date:2010-02-24
Release date:2010-03-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1 and a Classification of Related Gtpase Family Members in This Kinetoplastid.
Mol.Biochem.Parasitol., 174, 2010
3MZL
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BU of 3mzl by Molmil
Sec13/Sec31 edge element, loop deletion mutant
Descriptor: Protein transport protein SEC13, Protein transport protein SEC31
Authors:Whittle, J.R, Schwartz, T.U.
Deposit date:2010-05-12
Release date:2010-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the Sec13-Sec16 edge element, a template for assembly of the COPII vesicle coat.
J.Cell Biol., 190, 2010
2VJ1
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BU of 2vj1 by Molmil
A Structural View of the Inactivation of the SARS-Coronavirus Main Proteinase by Benzotriazole Esters
Descriptor: 4-(DIMETHYLAMINO)BENZOIC ACID, BENZOIC ACID, DIMETHYL SULFOXIDE, ...
Authors:Verschueren, K.H.G, Pumpor, K, Anemueller, S, Mesters, J.R, Hilgenfeld, R.
Deposit date:2007-12-06
Release date:2008-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A Structural View of the Inactivation of the Sars Coronavirus Main Proteinase by Benzotriazole Esters.
Chem.Biol., 15, 2008
2V5A
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BU of 2v5a by Molmil
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH POTENT INHIBITOR 3
Descriptor: 7-(2,5-dihydropyrrol-1-yl)-6-phenyl-pyrido[6,5-d]pyrimidin-2-amine, BIOTIN CARBOXYLASE, CHLORIDE ION
Authors:Mochalkin, I, Miller, J.R.
Deposit date:2008-10-02
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:A Class of Selective Antibacterials Derived from a Protein Kinase Inhibitor Pharmacophore.
Proc.Natl.Acad.Sci.USA, 106, 2009
2P0R
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BU of 2p0r by Molmil
Structure of Human Calpain 9 in complex with Leupeptin
Descriptor: CALCIUM ION, Calpain-9, leupeptin
Authors:Davis, T.L, Paramanathan, R, Walker, J.R, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-03-01
Release date:2007-03-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of Human Minicalpains bound to Inhibitors
To be Published
2UUF
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BU of 2uuf by Molmil
Thrombin-hirugen binary complex at 1.26A resolution
Descriptor: CALCIUM ION, HIRUDIN I, HUMAN ALPHA THROMBIN, ...
Authors:Ahmed, H.U, Blakeley, M.P, Cianci, M, Cruickshank, D.W.J, Hubbard, J.A, Helliwell, J.R.
Deposit date:2007-03-02
Release date:2007-09-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:The Determination of Protonation States in Proteins.
Acta Crystallogr.,Sect.D, 63, 2007

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