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PDB: 3278 results

1YH2
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Ubiquitin-Conjugating Enzyme HSPC150
Descriptor: HSPC150 protein similar to ubiquitin-conjugating enzyme
Authors:Walker, J.R, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Kozieradzki, I, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-01-06
Release date:2005-02-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.
Mol Cell Proteomics, 11, 2012
1YGH
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HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAE
Descriptor: GLYCEROL, PROTEIN (TRANSCRIPTIONAL ACTIVATOR GCN5)
Authors:Trievel, R.C, Rojas, J.R, Sterner, D.E, Venkataramani, R, Wang, L, Zhou, J, Allis, C.D, Berger, S.L, Marmorstein, R.
Deposit date:1999-05-27
Release date:1999-08-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and mechanism of histone acetylation of the yeast GCN5 transcriptional coactivator.
Proc.Natl.Acad.Sci.USA, 96, 1999
1YBA
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The active form of phosphoglycerate dehydrogenase
Descriptor: 2-OXOGLUTARIC ACID, D-3-phosphoglycerate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thompson, J.R, Banaszak, L.J.
Deposit date:2004-12-20
Release date:2005-04-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Vmax Regulation through Domain and Subunit Changes. The Active Form of Phosphoglycerate Dehydrogenase
Biochemistry, 44, 2005
1DDN
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BU of 1ddn by Molmil
DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
Descriptor: 33 BASE DNA CONTAINING TOXIN OPERATOR, DIPHTHERIA TOX REPRESSOR, NICKEL (II) ION
Authors:White, A, Ding, X, Vanderspek, J.C, Murphy, J.R, Ringe, D.
Deposit date:1998-06-23
Release date:1998-10-14
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex.
Nature, 394, 1998
1X7V
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Crystal structure of PA3566 from Pseudomonas aeruginosa
Descriptor: PA3566 protein, SULFATE ION
Authors:Sanders, D.A, Walker, J.R, Skarina, T, Gorodichtchenskaia, E, Joachimiak, A, Edwards, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-08-16
Release date:2004-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The X-ray crystal structure of PA3566 from Pseudomonas aureginosa at 1.8 A resolution.
Proteins, 61, 2005
1XHS
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BU of 1xhs by Molmil
Solution NMR Structure of Protein ytfP from Escherichia coli. Northeast Structural Genomics Consortium Target ER111.
Descriptor: Hypothetical UPF0131 protein ytfP
Authors:Aramini, J.M, Huang, Y.J, Swapna, G.V.T, Paranji, R.K, Xiao, R, Shastry, R, Acton, T.B, Cort, J.R, Kennedy, M.A, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-09-20
Release date:2005-01-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.
Proteins, 68, 2007
1XHY
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X-ray structure of the Y702F mutant of the GluR2 ligand-binding core (S1S2J) in complex with kainate at 1.85 A resolution
Descriptor: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Glutamate receptor, SULFATE ION
Authors:Frandsen, A, Pickering, D.S, Vestergaard, B, Kasper, C, Nielsen, B.B, Greenwood, J.R, Campiani, G, Gajhede, M, Schousboe, A, Kastrup, J.S.
Deposit date:2004-09-21
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Tyr702 Is an Important Determinant of Agonist Binding and Domain Closure of the Ligand-Binding Core of GluR2.
Mol.Pharmacol., 67, 2005
1YJD
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BU of 1yjd by Molmil
Crystal structure of human CD28 in complex with the Fab fragment of a mitogenic antibody (5.11A1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab fragment of 5.11A1 antibody heavy chain, Fab fragment of 5.11A1 antibody light chain, ...
Authors:Evans, E.J, Esnouf, R.M, Manso-Sancho, R, Gilbert, R.J.C, James, J.R, Sorensen, P, Stuart, D.I, Davis, S.J.
Deposit date:2005-01-14
Release date:2005-02-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a soluble CD28-Fab complex
Nat.Immunol., 6, 2005
1ETG
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BU of 1etg by Molmil
REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, 19 STRUCTURES
Descriptor: REV PEPTIDE, REV RESPONSIVE ELEMENT RNA
Authors:Battiste, J.L, Mao, H, Rao, N.S, Tan, R, Muhandiram, D.R, Kay, L.E, Frankel, A.D, Willamson, J.R.
Deposit date:1996-08-28
Release date:1997-03-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.
Science, 273, 1996
2FN2
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BU of 2fn2 by Molmil
SOLUTION NMR STRUCTURE OF THE GLYCOSYLATED SECOND TYPE TWO MODULE OF FIBRONECTIN, 20 STRUCTURES
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FIBRONECTIN
Authors:Sticht, H, Pickford, A.R, Potts, J.R, Campbell, I.D.
Deposit date:1997-08-06
Release date:1998-09-16
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Solution structure of the glycosylated second type 2 module of fibronectin.
J.Mol.Biol., 276, 1998
1YQZ
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Structure of Coenzyme A-Disulfide Reductase from Staphylococcus aureus refined at 1.54 Angstrom resolution
Descriptor: CHLORIDE ION, COENZYME A, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Mallett, T.C, Wallen, J.R, Sakai, H, Luba, J, Parsonage, D, Karplus, P.A, Tsukihara, T, Claiborne, A.
Deposit date:2005-02-02
Release date:2006-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure of coenzyme A-disulfide reductase from Staphylococcus aureus at 1.54 A resolution.
Biochemistry, 45, 2006
1XSV
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X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50
Descriptor: Hypothetical UPF0122 protein SAV1236
Authors:Walker, J.R, Xu, X, Virag, C, McDonald, M.-L, Houston, S, Buzadzija, K, Vedadi, M, Dharamsi, A, Fiebig, K.M, Savchenko, A.
Deposit date:2004-10-20
Release date:2004-10-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1.7 Angstrom Crystal Structure of Conserved Hypothetical UPF0122 Protein SAV1236 From Staphylococcus aureus
To be Published
1XPN
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NMR structure of P. aeruginosa protein PA1324: Northeast Structural Genomics Consortium target PaP1
Descriptor: hypothetical protein PA1324
Authors:Cort, J.R, Ni, S, Lockert, E.E, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-10-08
Release date:2004-11-23
Last modified:2024-03-06
Method:SOLUTION NMR
Cite:Structure and function of Pseudomonas aeruginosa protein PA1324 (21-170).
Protein Sci., 18, 2009
1ETF
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BU of 1etf by Molmil
REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: REV PEPTIDE, REV RESPONSE ELEMENT RNA
Authors:Battiste, J.L, Mao, H, Rao, N.S, Tan, R, Muhandiram, D.R, Kay, L.E, Frankel, A.D, Willamson, J.R.
Deposit date:1996-08-28
Release date:1997-03-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.
Science, 273, 1996
1YNM
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BU of 1ynm by Molmil
Crystal structure of restriction endonuclease HinP1I
Descriptor: R.HinP1I restriction endonuclease
Authors:Yang, Z, Horton, J.R, Maunus, R, Wilson, G.G, Roberts, R.J, Cheng, X.
Deposit date:2005-01-24
Release date:2005-05-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI
Nucleic Acids Res., 33, 2005
1YRV
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Novel Ubiquitin-Conjugating Enzyme
Descriptor: ubiquitin-conjugating ligase MGC351130
Authors:Walker, J.R, Choe, J, Avvakumov, G.V, Newman, E.M, MacKenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-02-04
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.
Mol Cell Proteomics, 11, 2012
6DQB
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LINKED KDM5A JMJ DOMAIN FORMING COVALENT BOND TO INHIBITOR N71 i.e. 2-((3-(4-(dimethylamino)but-2-enamido)phenyl)(2-(piperidin-1-yl)ethoxy)methyl)thieno[3,2-b]pyridine-7-carboxylic acid
Descriptor: 2-{(R)-(3-{[(2E)-4-(dimethylamino)but-2-enoyl]amino}phenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, 2-{(R)-(3-{[4-(dimethylamino)butanoyl]amino}phenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, 2-{(S)-(3-{[4-(dimethylamino)butanoyl]amino}phenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.791 Å)
Cite:Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.
J. Med. Chem., 61, 2018
6DQ8
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N49 i.e. 2-((2-chlorophenyl)(2-(1-methylpyrrolidin-2-yl)ethoxy)methyl)thieno[3,2-b]pyridine-7-carboxylic acid
Descriptor: 1,2-ETHANEDIOL, 2-[(R)-(2-chlorophenyl){2-[(2S)-1-methylpyrrolidin-2-yl]ethoxy}methyl]thieno[3,2-b]pyridine-7-carboxylic acid, 2-[(S)-(2-chlorophenyl){2-[(2S)-1-methylpyrrolidin-2-yl]ethoxy}methyl]thieno[3,2-b]pyridine-7-carboxylic acid, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.
J. Med. Chem., 61, 2018
1QGB
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SOLUTION STRUCTURE OF THE N-TERMINAL F1 MODULE PAIR FROM HUMAN FIBRONECTIN
Descriptor: PROTEIN (FIBRONECTIN)
Authors:Potts, J.R, Bright, J.R, Bolton, D, Pickford, A.R, Campbell, I.D.
Deposit date:1999-04-21
Release date:1999-12-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal F1 module pair from human fibronectin.
Biochemistry, 38, 1999
1XJS
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BU of 1xjs by Molmil
Solution structure of Iron-Sulfur cluster assembly protein IscU from Bacillus subtilis, with Zinc bound at the active site. Northeast Structural Genomics Consortium Target SR17
Descriptor: NifU-like protein, ZINC ION
Authors:Kornhaber, G.J, Swapna, G.V.T, Ramelot, T.A, Cort, J.R, Kennedy, M.A, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-09-24
Release date:2005-01-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of Iron-Sulfur cluster assembly protein IscU from Bacillus subtilis, with Zinc bound at the active site. Northeast Structural Genomics Consortium Target SR17.
To be Published
1YOX
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Structure of the conserved Protein of Unknown Function PA3696 from Pseudomonas aeruginosa
Descriptor: hypothetical protein PA3696
Authors:Walker, J.R, Xu, X, Gu, J, Joachimiak, A, Edwards, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-01-28
Release date:2005-04-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structure of the conserved hypothetical protein PA3696
To be Published
1YQB
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Human Ubiquilin 3
Descriptor: Ubiquilin 3
Authors:Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-02-01
Release date:2005-02-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Ubiquitin-like domain of Human Ubiquilin 3
To be Published
6DQ6
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N44 i.e. 3-((2-(pyridin-2-yl)-6-(4-(vinylsulfonyl)-1,4-diazepan-1-yl)pyrimidin-4-yl)amino)propanoic acid
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, Linked KDM5A Jmj Domain, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.587 Å)
Cite:Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.
J. Med. Chem., 61, 2018
6DQF
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LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N68 i.e. 2-(1-(2-(piperidin-1-yl)ethyl)-1H-benzo[d]imidazol-2-yl)thieno[3,2-b]pyridine-7-carboxylic acid
Descriptor: 2-{1-[2-(piperidin-1-yl)ethyl]-1H-benzimidazol-2-yl}thieno[3,2-b]pyridine-7-carboxylic acid, Linked KDM5A Jmj Domain, MANGANESE (II) ION
Authors:Horton, J.R, Cheng, X.
Deposit date:2018-06-10
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.688 Å)
Cite:To be determined
To Be Published
6DQA
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Linked KDM5A JMJ Domain Bound to Inhibitor N70 i.e.[2-((3-aminophenyl)(2-(piperidin-1-yl)ethoxy)methyl)thieno[3,2-b]pyridine-7-carboxylic acid]
Descriptor: 1,2-ETHANEDIOL, 2-{(R)-(3-aminophenyl)[2-(piperidin-1-yl)ethoxy]methyl}thieno[3,2-b]pyridine-7-carboxylic acid, GLYCEROL, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2018-06-10
Release date:2018-11-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.888 Å)
Cite:Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.
J. Med. Chem., 61, 2018

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