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PDB: 680 results

2YLL
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BU of 2yll by Molmil
Inhibition of the pneumococcal virulence factor StrH and molecular insights into N-glycan recognition and hydrolysis
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, BETA-N-ACETYLHEXOSAMINIDASE, ...
Authors:Pluvinage, B, Higgins, M.A, Abbott, D.W, Robb, C, Dalia, A.B, Deng, L, Weiser, J.N, Parsons, T.B, Fairbanks, A.J, Vocadlo, D.J, Boraston, A.B.
Deposit date:2011-06-02
Release date:2011-09-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis.
Structure, 19, 2011
3GRU
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BU of 3gru by Molmil
Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1
Descriptor: ADENOSINE MONOPHOSPHATE, Dimethyladenosine transferase, SULFATE ION
Authors:Scarsdale, J.N, Musayev, F.N, Rife, J.P.
Deposit date:2009-03-26
Release date:2010-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design.
Biochemistry, 49, 2010
8Q04
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BU of 8q04 by Molmil
Chlorella sorokiniana Rubisco: D4 symmetry imposed
Descriptor: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, chloroplastic
Authors:Barrett, J, Blaza, J.N, Mackinder, L.C.M.
Deposit date:2023-07-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:A promiscuous mechanism to phase separate eukaryotic carbon fixation
To Be Published
8Q05
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BU of 8q05 by Molmil
Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded
Descriptor: CsLinker (alpha3-alpha4), Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, ...
Authors:Barrett, J, Blaza, J.N, Mackinder, L.C.M.
Deposit date:2023-07-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:A promiscuous mechanism to phase separate eukaryotic carbon fixation
To Be Published
8R4Z
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BU of 8r4z by Molmil
Crystal structure of alpha keto acid C-methyl-transferases MrsA native-form
Descriptor: 2-ketoarginine methyltransferase, MAGNESIUM ION
Authors:Gerhardt, S, Kemper, F, Andexer, J.N.
Deposit date:2023-11-15
Release date:2024-07-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structures and Protein Engineering of the alpha-Keto Acid C-Methyltransferases SgvM and MrsA for Rational Substrate Transfer.
Chembiochem, 25, 2024
8QNO
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BU of 8qno by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase treated at 368 K from Pyrococcus furiosus in complex with inosine
Descriptor: Adenosylhomocysteinase, INOSINE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Saleem-Batcha, R, Koeppl, L.H, Popadic, D, Andexer, J.N.
Deposit date:2023-09-27
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.033 Å)
Cite:Structure, function and substrate preferences of archaeal S-adenosyl-L-homocysteine hydrolases.
Commun Biol, 7, 2024
8QC9
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BU of 8qc9 by Molmil
Crystal structure of the outer membrane decaheme cytochrome MtrC (A293Boc-Lys)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Nash, B.W, Lockwood, C.J, Edwards, M.J, Whiting, K, Butt, J.N, Clarke, T.A.
Deposit date:2023-08-25
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c -Type Cytochrome.
Acs Synth Biol, 13, 2024
8QBQ
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BU of 8qbq by Molmil
Crystal structure of the outer membrane decaheme cytochrome MtrC (A430Boc-Lys)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Nash, B.W, Lockwood, C.J, Whiting, K, Butt, J.N, Clarke, T.A, Edwards, M.J.
Deposit date:2023-08-25
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c -Type Cytochrome.
Acs Synth Biol, 13, 2024
8QBZ
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BU of 8qbz by Molmil
Crystal structure of the outer membrane decaheme cytochrome MtrC (E344Boc-Lys)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Edwards, M.J, Lockwood, C.J, Whiting, K, Nash, B.W, Butt, J.N, Clarke, T.A.
Deposit date:2023-08-25
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c -Type Cytochrome.
Acs Synth Biol, 13, 2024
2DKB
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BU of 2dkb by Molmil
DIALKYLGLYCINE DECARBOXYLASE STRUCTURE: BIFUNCTIONAL ACTIVE SITE AND ALKALI METAL BINDING SITES
Descriptor: 2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Toney, M.D, Hohenester, E, Jansonius, J.N.
Deposit date:1994-07-12
Release date:1994-10-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Dialkylglycine decarboxylase structure: bifunctional active site and alkali metal sites.
Science, 261, 1993
5X4H
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BU of 5x4h by Molmil
The crystal structure of Pyrococcus furiosus RecJ (wild-type)
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
8SSI
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BU of 8ssi by Molmil
Structure of Burkholderia pseudomallei deubiquitinase TssM in complex with ubiquitin
Descriptor: Deubiquitinase TssM, GLYCEROL, Ubiquitin, ...
Authors:Szczesna, M, Pruneda, J.N, Thurston, T.L.M.
Deposit date:2023-05-08
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Burkholderia esterase TssM counters RNF213-mediated bacterial ubiquitylation
To Be Published
5WPU
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BU of 5wpu by Molmil
Crystal structure HpiC1 Y101S
Descriptor: 12-epi-hapalindole C/U synthase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
5WPS
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BU of 5wps by Molmil
Crystal structure HpiC1 Y101F
Descriptor: 1,2-ETHANEDIOL, 12-epi-hapalindole C/U synthase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.389 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
8THS
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BU of 8ths by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA A69T
Descriptor: DI(HYDROXYETHYL)ETHER, KAEDE-TYPE RED FLUORESCENT PROTEIN, LEA A69T, ...
Authors:Henderson, J.N, Mills, J.H.
Deposit date:2023-07-17
Release date:2023-11-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing excited-state structural snapshots of evolutionary green-to-red photochromic fluorescent proteins.
Front Chem, 11, 2023
8TUA
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BU of 8tua by Molmil
Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Descriptor: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein
Authors:Cash, J.N, Tesmer, J.J.G.
Deposit date:2023-08-15
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Elife, 2024
8UB6
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BU of 8ub6 by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA H62X, containing 3-methylhistidine at position 62
Descriptor: LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS
Authors:Henderson, J.N, Mills, J.H.
Deposit date:2023-09-22
Release date:2023-11-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Capturing excited-state structural snapshots of evolutionary green-to-red photochromic fluorescent proteins.
Front Chem, 11, 2023
5WPP
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BU of 5wpp by Molmil
Crystal structure HpiC1 W73M/K132M
Descriptor: 12-epi-hapalindole C/U synthase, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
5X4J
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BU of 5x4j by Molmil
The crystal structure of Pyrococcus furiosus RecJ (Zn-soaking)
Descriptor: CHLORIDE ION, Uncharacterized protein, ZINC ION
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4K
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BU of 5x4k by Molmil
The complex crystal structure of Pyrococcus furiosus RecJ and CMP
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, Uncharacterized protein, ZINC ION
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5YY6
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BU of 5yy6 by Molmil
Crystal structure of Arabidopsis thaliana HPPD truncated mutant complexed with Benquitrione
Descriptor: 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, W.C, Chen, J.N, Yang, G.F.
Deposit date:2017-12-08
Release date:2019-01-16
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Crystal Structure of 4-Hydroxyphenylpyruvate Dioxygenase in Complex with Substrate Reveals a New Starting Point for Herbicide Discovery.
Research (Wash D C), 2019, 2019
5YWI
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BU of 5ywi by Molmil
Crystal structure of Arabidopsis thaliana HPPD Truncated mutant complexed with NTBC
Descriptor: 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, W.C, Chen, J.N.
Deposit date:2017-11-29
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of Arabidopsis thaliana HPPD Truncated mutant complexed with NTBC
To be published
5WPR
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BU of 5wpr by Molmil
Crystal structure HpiC1 in C2 space group
Descriptor: 12-epi-hapalindole C/U synthase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
5X4I
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BU of 5x4i by Molmil
Pyrococcus furiosus RecJ (D83A, Mn-soaking)
Descriptor: CHLORIDE ION, MANGANESE (II) ION, Uncharacterized protein
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5YY7
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BU of 5yy7 by Molmil
Crystal structure of Arabidopsis thaliana HPPD complexed with Benquitrione
Descriptor: 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, W.C, Chen, J.N, Yang, G.F.
Deposit date:2017-12-08
Release date:2019-01-16
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Crystal structure of Arabidopsis thaliana HPPD complexed with Benquitrione (Y13161)
To be published

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