Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 5677 results

2AWN
DownloadVisualize
BU of 2awn by Molmil
Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ATP-Mg)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Maltose/maltodextrin import ATP-binding protein malK
Authors:Lu, G, Westbrooks, J.M, Davidson, A.L, Chen, J.
Deposit date:2005-09-01
Release date:2005-12-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:ATP hydrolysis is required to reset the ATP-binding cassette dimer into the resting-state conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1G4D
DownloadVisualize
BU of 1g4d by Molmil
NMR STRUCTURE OF THE MU BACTERIOPHAGE REPRESSOR DNA-BINDING DOMAIN/DNA COMPLEX
Descriptor: 5'-D(P*CP*AP*GP*AP*TP*TP*AP*CP*TP*GP*AP*AP*AP*AP*GP*G)-3', 5'-D(P*CP*CP*TP*TP*TP*TP*CP*AP*GP*TP*AP*AP*TP*CP*TP*G)-3', REPRESSOR PROTEIN C
Authors:Wojciak, J.M, Iwahara, J, Clubb, R.T.
Deposit date:2000-10-26
Release date:2000-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove.
Nat.Struct.Biol., 8, 2001
2YI9
DownloadVisualize
BU of 2yi9 by Molmil
Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus in complex with magnesium
Descriptor: CHLORIDE ION, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M.
Deposit date:2011-05-11
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment.
Plos Pathog., 7, 2011
2AU1
DownloadVisualize
BU of 2au1 by Molmil
Crystal Structure of group A Streptococcus MAC-1 orthorhombic form
Descriptor: BETA-MERCAPTOETHANOL, IgG-degrading protease
Authors:Agniswamy, J, Nagiec, M.J, Liu, M, Schuck, P, Musser, J.M, Sun, P.D.
Deposit date:2005-08-26
Release date:2006-02-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of group a streptococcus mac-1: insight into dimer-mediated specificity for recognition of human IgG.
Structure, 14, 2006
2AVO
DownloadVisualize
BU of 2avo by Molmil
Kinetics, stability, and structural changes in high resolution crystal structures of HIV-1 protease with drug resistant mutations L24I, I50V, AND G73S
Descriptor: ACETIC ACID, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Liu, F, Boross, P.I, Wang, Y.F, Tozser, J, Louis, J.M, Harrison, R.W, Weber, I.T.
Deposit date:2005-08-30
Release date:2006-01-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Kinetic, stability, and structural changes in high-resolution crystal structures of HIV-1 protease with drug-resistant mutations L24I, I50V, and G73S.
J.Mol.Biol., 354, 2005
2Y6S
DownloadVisualize
BU of 2y6s by Molmil
Structure of an Ebolavirus-protective antibody in complex with its mucin-domain linear epitope
Descriptor: ENVELOPE GLYCOPROTEIN, HEAVY CHAIN, LIGHT CHAIN
Authors:Olal, D.O, Kuehne, A, Lee, J.E, Bale, S, Dye, J.M, Saphire, E.O.
Deposit date:2011-01-25
Release date:2012-01-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of an Ebola Virus-Protective Antibody in Complex with its Mucin-Domain Linear Epitope.
J.Virol., 86, 2012
2YIA
DownloadVisualize
BU of 2yia by Molmil
Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus
Descriptor: POTASSIUM ION, RNA-DIRECTED RNA POLYMERASE
Authors:Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M.
Deposit date:2011-05-11
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment.
Plos Pathog., 7, 2011
2QR4
DownloadVisualize
BU of 2qr4 by Molmil
Crystal structure of oligoendopeptidase-F from Enterococcus faecium
Descriptor: Peptidase M3B, oligoendopeptidase F
Authors:Ramagopal, U.A, Toro, R, Meyer, A.J, Freeman, J, Bain, K, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-07-27
Release date:2007-08-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of oligoendopeptidase-F from Enterococcus faecium.
To be Published
3KQ5
DownloadVisualize
BU of 3kq5 by Molmil
Crystal structure of an uncharacterized protein from Coxiella burnetii
Descriptor: Hypothetical cytosolic protein
Authors:Bonanno, J.B, Freeman, M, Bain, K.T, Chang, S, Ozyurt, S, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-11-17
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an uncharacterized protein from Coxiella burnetii
To be Published
2Y76
DownloadVisualize
BU of 2y76 by Molmil
Structure of Mycobacterium tuberculosis type II dehydroquinase complexed with (1R,4S,5R)-3-(benzo(b)thiophen-5-ylmethoxy)-2-(benzo(b) thiophen-5-ylmethyl)-1,4,5-trihydroxycyclohex-2-enecarboxylate
Descriptor: (1R,4S,5R)-3-(BENZO[b]THIOPHEN-5-YL)METHOXY-2-(BENZO[b]THIOPHEN-5-YL)METHYL-1,4,5-TRIHYDROXYCYCLOHEX-2-ENE-1-CARBOXYLATE, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Fox, G.C, Tizon, L, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Ainsa, J.A, Castedo, L, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2011-01-28
Release date:2011-08-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A prodrug approach for improving antituberculosis activity of potent Mycobacterium tuberculosis type II dehydroquinase inhibitors.
J. Med. Chem., 54, 2011
2QWT
DownloadVisualize
BU of 2qwt by Molmil
Crystal structure of the TetR transcription regulatory protein from Mycobacterium vanbaalenii
Descriptor: Transcriptional regulator, TetR family
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Adams, J, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-08-10
Release date:2007-08-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the TetR transcription regulatory protein from Mycobacterium vanbaalenii.
To be Published
6WW5
DownloadVisualize
BU of 6ww5 by Molmil
Structure of VcINDY-Na-Fab84 in nanodisc
Descriptor: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, DASS family sodium-coupled anion symporter, Fab84 Heavy Chain, ...
Authors:Sauer, D.B, Marden, J, Song, J.M, Koide, A, Koide, S, Wang, D.N.
Deposit date:2020-05-07
Release date:2020-09-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife, 9, 2020
2AVQ
DownloadVisualize
BU of 2avq by Molmil
Kinetics, stability, and structural changes in high resolution crystal structures of HIV-1 protease with drug resistant mutations L24I, I50V, AND G73S
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide, ...
Authors:Liu, F, Boross, P.I, Wang, Y.F, Tozser, J, Louis, J.M, Harrison, R.W, Weber, I.T.
Deposit date:2005-08-30
Release date:2006-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Kinetic, stability, and structural changes in high-resolution crystal structures of HIV-1 protease with drug-resistant mutations L24I, I50V, and G73S.
J.Mol.Biol., 354, 2005
2YKT
DownloadVisualize
BU of 2ykt by Molmil
Crystal structure of the I-BAR domain of IRSp53 (BAIAP2) in complex with an EHEC derived Tir peptide
Descriptor: BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2, SULFATE ION, TRANSLOCATED INTIMIN RECEPTOR PROTEIN
Authors:de Groot, J.C, Schlueter, K, Carius, Y, Quedenau, C, Vingadassalom, D, Faix, J, Weiss, S.M, Reichelt, J, Standfuss-Gabisch, C, Lesser, C.F, Leong, J.M, Heinz, D.W, Buessow, K, Stradal, T.E.B.
Deposit date:2011-05-30
Release date:2011-09-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural Basis for Complex Formation between Human Irsp53 and the Translocated Intimin Receptor Tir of Enterohemorrhagic E. Coli.
Structure, 19, 2011
1FXH
DownloadVisualize
BU of 1fxh by Molmil
MUTANT OF PENICILLIN ACYLASE IMPAIRED IN CATALYSIS WITH PHENYLACETIC ACID IN THE ACTIVE SITE
Descriptor: 2-PHENYLACETIC ACID, CALCIUM ION, PENICILLIN ACYLASE
Authors:Alkema, W.B, Hensgens, C.M, Kroezinga, E.H, de Vries, E, Floris, R, van der Laan, J.M, Dijkstra, B.W, Janssen, D.B.
Deposit date:2000-09-26
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Characterization of the beta-lactam binding site of penicillin acylase of Escherichia coli by structural and site-directed mutagenesis studies.
Protein Eng., 13, 2000
2YI8
DownloadVisualize
BU of 2yi8 by Molmil
Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus
Descriptor: CHLORIDE ION, POTASSIUM ION, RNA-DIRECTED RNA POLYMERASE
Authors:Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M.
Deposit date:2011-05-11
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment.
Plos Pathog., 7, 2011
2V8O
DownloadVisualize
BU of 2v8o by Molmil
Structure of the Murray Valley encephalitis virus RNA helicase to 1. 9A resolution
Descriptor: FLAVIVIRIN PROTEASE NS3
Authors:Mancini, E.J, Assenberg, R, Verma, A, Walter, T.S, Tuma, R, Grimes, J.M, Owens, R.J, Stuart, D.I.
Deposit date:2007-08-09
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Murray Valley Encephalitis Virus RNA Helicase at 1.9 A Resolution.
Protein Sci., 16, 2007
6WU1
DownloadVisualize
BU of 6wu1 by Molmil
Structure of apo LaINDY
Descriptor: DASS family sodium-coupled anion symporter, DECANE, HEXANE, ...
Authors:Sauer, D.B, Marden, J.J, Cocco, N.C, Song, J.M, Wang, D.N, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2020-05-04
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife, 9, 2020
2CKU
DownloadVisualize
BU of 2cku by Molmil
Solution structure of 2F13F1 from human fibronectin
Descriptor: FIBRONECTIN
Authors:Werner, J.M, Potts, J.R.
Deposit date:2006-04-21
Release date:2007-04-03
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:The Solution and Crystal Structures of a Module Pair from the Staphylococcus Aureus-Binding Site of Human Fibronectin-A Tale with a Twist.
J.Mol.Biol., 368, 2007
3MOG
DownloadVisualize
BU of 3mog by Molmil
Crystal structure of 3-hydroxybutyryl-CoA dehydrogenase from Escherichia coli K12 substr. MG1655
Descriptor: CHLORIDE ION, GLYCEROL, Probable 3-hydroxybutyryl-CoA dehydrogenase
Authors:Patskovsky, Y, Ramagopal, U, Toro, R, Gilmore, M, Miller, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-04-22
Release date:2010-06-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of 3-Hydroxybutyryl-Coa Dehydrogenase from Escherichia Coli K12
To be Published
2PXC
DownloadVisualize
BU of 2pxc by Molmil
Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAM and GTPA
Descriptor: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)], S-ADENOSYLMETHIONINE
Authors:Assenberg, R, Ren, J, Verma, A, Walter, T.S, Alderton, D, Hurrelbrink, R.J, Fuller, S.D, Owens, R.J, Stuart, D.I, Grimes, J.M, Oxford Protein Production Facility (OPPF)
Deposit date:2007-05-14
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the Murray Valley encephalitis virus NS5 methyltransferase domain in complex with cap analogues.
J.Gen.Virol., 88, 2007
3MN1
DownloadVisualize
BU of 3mn1 by Molmil
Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a
Descriptor: CHLORIDE ION, probable yrbi family phosphatase
Authors:Patskovsky, Y, Ramagopal, U, Toro, R, Freeman, J, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-04-20
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis.
Biochemistry, 52, 2013
2PX8
DownloadVisualize
BU of 2px8 by Molmil
Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH and 7M-GTP
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
Authors:Assenberg, R, Ren, J, Verma, A, Walter, T.S, Alderton, D, Hurrelbrink, R.J, Fuller, S.D, Owens, R.J, Stuart, D.I, Grimes, J.M, Oxford Protein Production Facility (OPPF)
Deposit date:2007-05-14
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the Murray Valley encephalitis virus NS5 methyltransferase domain in complex with cap analogues.
J.Gen.Virol., 88, 2007
3MFC
DownloadVisualize
BU of 3mfc by Molmil
Computationally designed end0-1,4-beta,xylanase
Descriptor: Endo-1,4-beta-xylanase, SULFATE ION
Authors:Morin, A, Harp, J.M.
Deposit date:2010-04-01
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Computational design of an endo-1,4-{beta}-xylanase ligand binding site.
Protein Eng.Des.Sel., 24, 2011
3KNR
DownloadVisualize
BU of 3knr by Molmil
Bacillus cereus metallo-beta-lactamase Cys221Asp mutant, 1 mM Zn(II)
Descriptor: ACETIC ACID, Beta-lactamase 2, GLYCEROL, ...
Authors:Medrano Martin, F.J, Gonzalez, J.M, Vila, A.J.
Deposit date:2009-11-12
Release date:2010-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Metallo-beta-lactamases withstand low Zn(II) conditions by tuning metal-ligand interactions.
Nat.Chem.Biol., 8, 2012

227111

数据于2024-11-06公开中

PDB statisticsPDBj update infoContact PDBjnumon