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PDB: 5628 results

1L8Q
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CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION
Authors:Erzberger, J.P, Pirruccello, M.M, Berger, J.M.
Deposit date:2002-03-21
Release date:2002-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
4CS8
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BU of 4cs8 by Molmil
Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer, form 2
Descriptor: M2-1, ZINC ION
Authors:Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
Deposit date:2014-03-05
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
2FO0
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BU of 2fo0 by Molmil
Organization of the SH3-SH2 Unit in Active and Inactive Forms of the c-Abl Tyrosine Kinase
Descriptor: 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE, GLYCEROL, MYRISTIC ACID, ...
Authors:Nagar, B, Hantschel, O, Seeliger, M, Davies, J.M, Weis, W.I, Superti-Furga, G, Kuriyan, J.
Deposit date:2006-01-12
Release date:2006-03-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase.
Mol.Cell, 21, 2006
3MJM
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BU of 3mjm by Molmil
His257Ala mutant of dihydroorotase from E. coli
Descriptor: (4S)-2,6-DIOXOHEXAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, Dihydroorotase, N-CARBAMOYL-L-ASPARTATE, ...
Authors:Ernberg, K.E, Guss, J.M, Lee, M, Maher, M.J.
Deposit date:2010-04-13
Release date:2011-03-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:His257Ala mutant of dihydroorotase from E. coli
To be Published
1PV4
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BU of 1pv4 by Molmil
X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA
Descriptor: 5'-D(P*CP*C)-3', Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-26
Release date:2003-07-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
4CI6
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BU of 4ci6 by Molmil
Mechanisms of crippling actin-dependent phagocytosis by YopO
Descriptor: ACTIN, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Lee, W.L, Grimes, J.M, Robinson, R.C.
Deposit date:2013-12-06
Release date:2015-01-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Yersinia Effector Yopo Uses Actin as Bait to Phosphorylate Proteins that Regulate Actin Polymerization.
Nat.Struct.Mol.Biol., 22, 2015
1PVO
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BU of 1pvo by Molmil
X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP
Descriptor: 5'-R(P*UP*C)-3', PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-27
Release date:2003-07-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
4CS7
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BU of 4cs7 by Molmil
Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer, form 1
Descriptor: M2-1, ZINC ION
Authors:Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
Deposit date:2014-03-05
Release date:2014-05-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
3FZV
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BU of 3fzv by Molmil
Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
Descriptor: Probable transcriptional regulator, SULFATE ION
Authors:Knapik, A.A, Tkaczuk, K.L, Chruszcz, M, Wang, S, Zimmerman, M.D, Cymborowski, M, Skarina, T, Kagan, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Bujnicki, J.M, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-01-26
Release date:2009-03-10
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
To be Published
3DBI
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BU of 3dbi by Molmil
CRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATE
Descriptor: GLYCEROL, PHOSPHATE ION, SUGAR-BINDING TRANSCRIPTIONAL REGULATOR, ...
Authors:Patskovsky, Y, Ozyurt, S, Freeman, J, Wu, B, Maletic, M, Koss, J, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-06-01
Release date:2008-07-01
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of Sugar-Binding Transcriptional Regulator (LacI Family) from Escherichia Coli Complexed with Phosphate.
To be Published
2FQQ
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BU of 2fqq by Molmil
Crystal structure of human caspase-1 (Cys285->Ala, Cys362->Ala, Cys364->Ala, Cys397->Ala) in complex with 1-methyl-3-trifluoromethyl-1H-thieno[2,3-c]pyrazole-5-carboxylic acid (2-mercapto-ethyl)-amide
Descriptor: 1-METHYL-3-TRIFLUOROMETHYL-1H-THIENO[2,3-C]PYRAZOLE-5-CARBOXYLIC ACID (2-MERCAPTO-ETHYL)-AMIDE, Caspase-1
Authors:Scheer, J.M, Wells, J.A, Romanowski, M.J.
Deposit date:2006-01-18
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A common allosteric site and mechanism in caspases
Proc.Natl.Acad.Sci.USA, 103, 2006
3M2M
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BU of 3m2m by Molmil
Rat galectin-1 complex with lactose
Descriptor: Galectin-1, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Lobsanov, Y.D, Rini, J.M, Leffler, H.
Deposit date:2010-03-07
Release date:2010-07-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Monovalent interactions of galectin-1.
Biochemistry, 49, 2010
3DGP
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BU of 3dgp by Molmil
Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2
Descriptor: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5
Authors:Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A.
Deposit date:2008-06-14
Release date:2008-08-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for group A trichothiodystrophy
Nat.Struct.Mol.Biol., 15, 2008
1S0Z
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BU of 1s0z by Molmil
Crystal structure of the VDR LBD complexed to seocalcitol.
Descriptor: SEOCALCITOL, Vitamin D3 receptor
Authors:Tocchini-Valentini, G, Rochel, N, Wurtz, J.M, Moras, D.
Deposit date:2004-01-05
Release date:2004-04-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the vitamin D nuclear receptor liganded with the vitamin D side chain analogues calcipotriol and seocalcitol, receptor agonists of clinical importance. Insights into a structural basis for the switching of calcipotriol to a receptor antagonist by further side chain modification.
J.Med.Chem., 47, 2004
3FXG
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BU of 3fxg by Molmil
Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg
Descriptor: MAGNESIUM ION, Rhamnonate dehydratase
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-01-20
Release date:2009-02-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg
To be Published
4CS9
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BU of 4cs9 by Molmil
Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer bound to adenosine monophosphate
Descriptor: ADENOSINE MONOPHOSPHATE, M2-1, ZINC ION
Authors:Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
Deposit date:2014-03-05
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
1S1Q
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BU of 1s1q by Molmil
TSG101(UEV) domain in complex with Ubiquitin
Descriptor: ACETIC ACID, COPPER (II) ION, SULFATE ION, ...
Authors:Sundquist, W.I, Schubert, H.L, Kelly, B.N, Hill, G.C, Holton, J.M, Hill, C.P.
Deposit date:2004-01-07
Release date:2004-05-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ubiquitin recognition by the human TSG101 protein
Mol.Cell, 13, 2004
1MM3
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BU of 1mm3 by Molmil
Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
Descriptor: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
Authors:Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2002-09-02
Release date:2003-07-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
4BIJ
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BU of 4bij by Molmil
Threading model of T7 large terminase
Descriptor: DNA MATURASE B
Authors:Dauden, M.I, Martin-Benito, J, Sanchez-Ferrero, J.C, Pulido-Cid, M, Valpuesta, J.M, Carrascosa, J.L.
Deposit date:2013-04-10
Release date:2013-05-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Large Terminase Conformational Change Induced by Connector Binding in Bacteriophage T7
J.Biol.Chem., 288, 2013
3K4H
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BU of 3k4h by Molmil
CRYSTAL STRUCTURE OF putative transcriptional regulator LacI from Bacillus cereus subsp. cytotoxis NVH 391-98
Descriptor: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, putative transcriptional regulator
Authors:Malashkevich, V.N, Toro, R, Morano, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-05
Release date:2009-11-10
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CRYSTAL STRUCTURE OF putative transcriptional regulator LacI from Bacillus cereus subsp. cytotoxis NVH 391-98
To be Published
1S83
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BU of 1s83 by Molmil
PORCINE TRYPSIN COMPLEXED WITH 4-AMINO PROPANOL
Descriptor: 4-HYDROXYBUTAN-1-AMINIUM, CALCIUM ION, MAGNESIUM ION, ...
Authors:Transue, T.R, Krahn, J.M, Gabel, S.A, DeRose, E.F, London, R.E.
Deposit date:2004-01-30
Release date:2004-03-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:X-ray and NMR characterization of covalent complexes of trypsin, borate, and alcohols.
Biochemistry, 43, 2004
3HVD
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BU of 3hvd by Molmil
The Protective Antigen Component of Anthrax Toxin Forms Functional Octameric Complexes
Descriptor: CALCIUM ION, Protective antigen
Authors:Kintzer, A.F, Dong, K.C, Berger, J.M, Krantz, B.A.
Deposit date:2009-06-15
Release date:2009-08-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.209 Å)
Cite:The protective antigen component of anthrax toxin forms functional octameric complexes.
J.Mol.Biol., 392, 2009
3HY9
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BU of 3hy9 by Molmil
Crystal Structure of the Catalytic Domain of ADAMTS-5 in Complex with an Amino-2-indanol compound
Descriptor: (3R)-N~2~-(cyclopropylmethyl)-N~1~-hydroxy-3-(3-hydroxybenzyl)-N~4~-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-L-aspartamide, CALCIUM ION, Catalytic Domain of ADAMTS-5, ...
Authors:Shieh, H.-S, Williams, J.M, Caspers, N, Mathis, K.J, Tortorella, M.D, Tomasselli, A.
Deposit date:2009-06-22
Release date:2009-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural and inhibition analysis reveals the mechanism of selectivity of a series of aggrecanase inhibitors
J.Biol.Chem., 284, 2009
8ETR
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BU of 8etr by Molmil
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Descriptor: (6S,8R)-N-[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl)carbamoyl]-6-(methylamino)-6,7-dihydro-5H-pyrazolo[5,1-b][1,3]oxazine-3-sulfonamide, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Murray, J.M, Johnson, M.C.
Deposit date:2022-10-17
Release date:2022-11-02
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Overcoming Preclinical Safety Obstacles to Discover ( S )- N -((1,2,3,5,6,7-Hexahydro- s -indacen-4-yl)carbamoyl)-6-(methylamino)-6,7-dihydro-5 H -pyrazolo[5,1- b ][1,3]oxazine-3-sulfonamide (GDC-2394): A Potent and Selective NLRP3 Inhibitor.
J.Med.Chem., 65, 2022
1M0I
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BU of 1m0i by Molmil
Crystal Structure of Bacteriophage T7 Endonuclease I with a Wild-Type Active Site
Descriptor: SULFATE ION, endodeoxyribonuclease I
Authors:Hadden, J.M, Declais, A.C, Phillips, S.E, Lilley, D.M.
Deposit date:2002-06-13
Release date:2002-12-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Metal ions bound at the active site of the junction-resolving enzyme T7 endonuclease I
Embo J., 21, 2002

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