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PDB: 5628 件

1L8Q
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CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION
著者Erzberger, J.P, Pirruccello, M.M, Berger, J.M.
登録日2002-03-21
公開日2002-09-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
4CS8
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Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer, form 2
分子名称: M2-1, ZINC ION
著者Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
登録日2014-03-05
公開日2014-05-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
2FO0
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Organization of the SH3-SH2 Unit in Active and Inactive Forms of the c-Abl Tyrosine Kinase
分子名称: 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE, GLYCEROL, MYRISTIC ACID, ...
著者Nagar, B, Hantschel, O, Seeliger, M, Davies, J.M, Weis, W.I, Superti-Furga, G, Kuriyan, J.
登録日2006-01-12
公開日2006-03-21
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase.
Mol.Cell, 21, 2006
3MJM
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His257Ala mutant of dihydroorotase from E. coli
分子名称: (4S)-2,6-DIOXOHEXAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, Dihydroorotase, N-CARBAMOYL-L-ASPARTATE, ...
著者Ernberg, K.E, Guss, J.M, Lee, M, Maher, M.J.
登録日2010-04-13
公開日2011-03-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献His257Ala mutant of dihydroorotase from E. coli
To be Published
1PV4
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X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA
分子名称: 5'-D(P*CP*C)-3', Transcription termination factor rho
著者Skordalakes, E, Berger, J.M.
登録日2003-06-26
公開日2003-07-22
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
4CI6
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Mechanisms of crippling actin-dependent phagocytosis by YopO
分子名称: ACTIN, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
著者Lee, W.L, Grimes, J.M, Robinson, R.C.
登録日2013-12-06
公開日2015-01-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.651 Å)
主引用文献Yersinia Effector Yopo Uses Actin as Bait to Phosphorylate Proteins that Regulate Actin Polymerization.
Nat.Struct.Mol.Biol., 22, 2015
1PVO
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X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP
分子名称: 5'-R(P*UP*C)-3', PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Transcription termination factor rho
著者Skordalakes, E, Berger, J.M.
登録日2003-06-27
公開日2003-07-22
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
4CS7
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Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer, form 1
分子名称: M2-1, ZINC ION
著者Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
登録日2014-03-05
公開日2014-05-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
3FZV
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Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
分子名称: Probable transcriptional regulator, SULFATE ION
著者Knapik, A.A, Tkaczuk, K.L, Chruszcz, M, Wang, S, Zimmerman, M.D, Cymborowski, M, Skarina, T, Kagan, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Bujnicki, J.M, Minor, W, Midwest Center for Structural Genomics (MCSG)
登録日2009-01-26
公開日2009-03-10
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
To be Published
3DBI
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CRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATE
分子名称: GLYCEROL, PHOSPHATE ION, SUGAR-BINDING TRANSCRIPTIONAL REGULATOR, ...
著者Patskovsky, Y, Ozyurt, S, Freeman, J, Wu, B, Maletic, M, Koss, J, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-06-01
公開日2008-07-01
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal Structure of Sugar-Binding Transcriptional Regulator (LacI Family) from Escherichia Coli Complexed with Phosphate.
To be Published
2FQQ
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Crystal structure of human caspase-1 (Cys285->Ala, Cys362->Ala, Cys364->Ala, Cys397->Ala) in complex with 1-methyl-3-trifluoromethyl-1H-thieno[2,3-c]pyrazole-5-carboxylic acid (2-mercapto-ethyl)-amide
分子名称: 1-METHYL-3-TRIFLUOROMETHYL-1H-THIENO[2,3-C]PYRAZOLE-5-CARBOXYLIC ACID (2-MERCAPTO-ETHYL)-AMIDE, Caspase-1
著者Scheer, J.M, Wells, J.A, Romanowski, M.J.
登録日2006-01-18
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A common allosteric site and mechanism in caspases
Proc.Natl.Acad.Sci.USA, 103, 2006
3M2M
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Rat galectin-1 complex with lactose
分子名称: Galectin-1, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Lobsanov, Y.D, Rini, J.M, Leffler, H.
登録日2010-03-07
公開日2010-07-21
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Monovalent interactions of galectin-1.
Biochemistry, 49, 2010
3DGP
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Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2
分子名称: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5
著者Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A.
登録日2008-06-14
公開日2008-08-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for group A trichothiodystrophy
Nat.Struct.Mol.Biol., 15, 2008
3FXG
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Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg
分子名称: MAGNESIUM ION, Rhamnonate dehydratase
著者Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2009-01-20
公開日2009-02-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg
To be Published
1S0Z
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BU of 1s0z by Molmil
Crystal structure of the VDR LBD complexed to seocalcitol.
分子名称: SEOCALCITOL, Vitamin D3 receptor
著者Tocchini-Valentini, G, Rochel, N, Wurtz, J.M, Moras, D.
登録日2004-01-05
公開日2004-04-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of the vitamin D nuclear receptor liganded with the vitamin D side chain analogues calcipotriol and seocalcitol, receptor agonists of clinical importance. Insights into a structural basis for the switching of calcipotriol to a receptor antagonist by further side chain modification.
J.Med.Chem., 47, 2004
4CS9
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Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer bound to adenosine monophosphate
分子名称: ADENOSINE MONOPHOSPHATE, M2-1, ZINC ION
著者Leyrat, C, Renner, M, Harlos, K, Grimes, J.M.
登録日2014-03-05
公開日2014-05-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae.
Elife, 3, 2014
1S1Q
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TSG101(UEV) domain in complex with Ubiquitin
分子名称: ACETIC ACID, COPPER (II) ION, SULFATE ION, ...
著者Sundquist, W.I, Schubert, H.L, Kelly, B.N, Hill, G.C, Holton, J.M, Hill, C.P.
登録日2004-01-07
公開日2004-05-04
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ubiquitin recognition by the human TSG101 protein
Mol.Cell, 13, 2004
1MM3
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Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
分子名称: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
著者Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
登録日2002-09-02
公開日2003-07-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
4BIJ
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Threading model of T7 large terminase
分子名称: DNA MATURASE B
著者Dauden, M.I, Martin-Benito, J, Sanchez-Ferrero, J.C, Pulido-Cid, M, Valpuesta, J.M, Carrascosa, J.L.
登録日2013-04-10
公開日2013-05-08
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (16 Å)
主引用文献Large Terminase Conformational Change Induced by Connector Binding in Bacteriophage T7
J.Biol.Chem., 288, 2013
3K4H
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CRYSTAL STRUCTURE OF putative transcriptional regulator LacI from Bacillus cereus subsp. cytotoxis NVH 391-98
分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, putative transcriptional regulator
著者Malashkevich, V.N, Toro, R, Morano, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2009-10-05
公開日2009-11-10
最終更新日2021-02-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献CRYSTAL STRUCTURE OF putative transcriptional regulator LacI from Bacillus cereus subsp. cytotoxis NVH 391-98
To be Published
1S83
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PORCINE TRYPSIN COMPLEXED WITH 4-AMINO PROPANOL
分子名称: 4-HYDROXYBUTAN-1-AMINIUM, CALCIUM ION, MAGNESIUM ION, ...
著者Transue, T.R, Krahn, J.M, Gabel, S.A, DeRose, E.F, London, R.E.
登録日2004-01-30
公開日2004-03-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献X-ray and NMR characterization of covalent complexes of trypsin, borate, and alcohols.
Biochemistry, 43, 2004
3HVD
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The Protective Antigen Component of Anthrax Toxin Forms Functional Octameric Complexes
分子名称: CALCIUM ION, Protective antigen
著者Kintzer, A.F, Dong, K.C, Berger, J.M, Krantz, B.A.
登録日2009-06-15
公開日2009-08-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献The protective antigen component of anthrax toxin forms functional octameric complexes.
J.Mol.Biol., 392, 2009
3HY9
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Crystal Structure of the Catalytic Domain of ADAMTS-5 in Complex with an Amino-2-indanol compound
分子名称: (3R)-N~2~-(cyclopropylmethyl)-N~1~-hydroxy-3-(3-hydroxybenzyl)-N~4~-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-L-aspartamide, CALCIUM ION, Catalytic Domain of ADAMTS-5, ...
著者Shieh, H.-S, Williams, J.M, Caspers, N, Mathis, K.J, Tortorella, M.D, Tomasselli, A.
登録日2009-06-22
公開日2009-07-07
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural and inhibition analysis reveals the mechanism of selectivity of a series of aggrecanase inhibitors
J.Biol.Chem., 284, 2009
8ETR
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CryoEM Structure of NLRP3 NACHT domain in complex with G2394
分子名称: (6S,8R)-N-[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl)carbamoyl]-6-(methylamino)-6,7-dihydro-5H-pyrazolo[5,1-b][1,3]oxazine-3-sulfonamide, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Murray, J.M, Johnson, M.C.
登録日2022-10-17
公開日2022-11-02
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Overcoming Preclinical Safety Obstacles to Discover ( S )- N -((1,2,3,5,6,7-Hexahydro- s -indacen-4-yl)carbamoyl)-6-(methylamino)-6,7-dihydro-5 H -pyrazolo[5,1- b ][1,3]oxazine-3-sulfonamide (GDC-2394): A Potent and Selective NLRP3 Inhibitor.
J.Med.Chem., 65, 2022
1M0I
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Crystal Structure of Bacteriophage T7 Endonuclease I with a Wild-Type Active Site
分子名称: SULFATE ION, endodeoxyribonuclease I
著者Hadden, J.M, Declais, A.C, Phillips, S.E, Lilley, D.M.
登録日2002-06-13
公開日2002-12-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Metal ions bound at the active site of the junction-resolving enzyme T7 endonuclease I
Embo J., 21, 2002

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