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PDB: 42254 results

4FJH
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RB69 DNA polymerase ternary complex with dGTP/dC
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
Authors:Xia, S, Wang, J, Konigsberg, W.H.
Deposit date:2012-06-11
Release date:2012-12-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase.
J.Am.Chem.Soc., 135, 2013
4FL1
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Structural and Biophysical Characterization of the Syk Activation Switch
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Tyrosine-protein kinase SYK
Authors:Graedler, U, Schwarz, D, Dresing, V, Musil, M, Bomke, J, Frech, M, Jaekel, S, Rysiok, T, Mueller-Pompalla, D, Wegener, A.
Deposit date:2012-06-14
Release date:2012-11-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural and biophysical characterization of the syk activation switch.
J.Mol.Biol., 425, 2013
4OR5
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Crystal structure of HIV-1 Tat complexed with human P-TEFb and AFF4
Descriptor: AF4/FMR2 family member 4, Cyclin-T1, Cyclin-dependent kinase 9, ...
Authors:Gu, J, Babayeva, N.D, Suwa, Y, Baranovskiy, A.G, Price, D.H, Tahirov, T.H.
Deposit date:2014-02-10
Release date:2014-04-16
Last modified:2014-06-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of HIV-1 Tat complexed with human P-TEFb and AFF4.
Cell Cycle, 13, 2014
4FLW
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Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4F5W
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BU of 4f5w by Molmil
Crystal structure of ligand free human STING CTD
Descriptor: CALCIUM ION, Transmembrane protein 173
Authors:Gu, L, Shang, G, Zhu, D, Li, N, Zhang, J, Zhu, C, Lu, D, Liu, C, Yu, Q, Zhao, Y, Xu, S.
Deposit date:2012-05-13
Release date:2012-06-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Crystal structures of STING protein reveal basis for recognition of cyclic di-GMP
Nat.Struct.Mol.Biol., 19, 2012
4F65
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Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 8
Descriptor: 1,2-ETHANEDIOL, 5-bromo-N~2~-[(3-methyl-1,2-oxazol-5-yl)methyl]-N~4~-[3-(2-phenylethyl)-1H-pyrazol-5-yl]pyrimidine-2,4-diamine, Fibroblast growth factor receptor 1, ...
Authors:Norman, R.A, Breed, J, Ogg, D.
Deposit date:2012-05-14
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase.
J.Med.Chem., 55, 2012
4FBD
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BU of 4fbd by Molmil
2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49.
Descriptor: Putative uncharacterized protein
Authors:Minasov, G, Ruan, J, Wawrzak, Z, Shuvalova, L, Ngo, H, Knoll, L, Milligan-Myhre, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-05-22
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49.
TO BE PUBLISHED
4F62
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Crystal structure of a putative farnesyl-diphosphate synthase from Marinomonas sp. MED121 (Target EFI-501980)
Descriptor: CHLORIDE ION, GLYCEROL, Geranyltranstransferase, ...
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Poulter, C.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-05-14
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily.
Proc.Natl.Acad.Sci.USA, 110, 2013
4F6G
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BU of 4f6g by Molmil
Aquomet Structure of His100Trp Cerebratulus lacteus mini-hemoglobin
Descriptor: GLYCEROL, Neural hemoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Soman, J, Salter, M.D, Olson, J.S.
Deposit date:2012-05-14
Release date:2012-05-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Aquomet Structure of His100Trp Cerebratulus lacteus mini-hemoglobin
To be Published
4FJJ
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RB69 DNA polymerase ternary complex with dTTP/dC
Descriptor: CALCIUM ION, DNA polymerase, DNA primer, ...
Authors:Xia, S, Wang, J, Konigsberg, W.H.
Deposit date:2012-06-11
Release date:2012-12-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase.
J.Am.Chem.Soc., 135, 2013
4ODI
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BU of 4odi by Molmil
2.6 Angstrom Crystal Structure of Putative Phosphoglycerate Mutase 1 from Toxoplasma gondii
Descriptor: Phosphoglycerate mutase PGMII, SODIUM ION
Authors:Minasov, G, Ruan, J, Ngo, H, Shuvalova, L, Dubrovska, I, Flores, K, Shanmugam, D, Roos, D, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-01-10
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii .
Front Cell Infect Microbiol, 8, 2018
4FKD
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BU of 4fkd by Molmil
Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta
Descriptor: Protein kinase C theta type, ZINC ION
Authors:Rahman, G.M, Shanker, S, Lewin, N.E, Prasad, B.V.V, Blumberg, P.M, Das, J.
Deposit date:2012-06-13
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.633 Å)
Cite:Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta.
Biochem.J., 451, 2013
4FE6
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Crystal Structure of HIV-1 Protease in Complex with an enamino-oxindole inhibitor
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[({(3Z)-3-[1-(methylamino)ethylidene]-2-oxo-2,3-dihydro-1H-indol-5-yl}sulfonyl)(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate, HIV protease
Authors:Silva, A.M, Eissenstat, M, Guerassina, T, Gulnik, S, Afonina, E, Yu, B, Erickson, J, Ludke, D, Yokoe, H.
Deposit date:2012-05-29
Release date:2012-07-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enamino-oxindole HIV protease inhibitors.
Bioorg.Med.Chem.Lett., 22, 2012
4FM2
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Pyrococcus abyssi B family DNA polymerase (triple mutant) bound to a dsDNA, in edition mode
Descriptor: DNA polymerase 1, GLYCEROL, MAGNESIUM ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FGE
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BU of 4fge by Molmil
Structure of the effector protein Tse1 from Pseudomonas aeruginosa
Descriptor: CHLORIDE ION, GLYCEROL, THIOCYANATE ION, ...
Authors:Benz, J, Sendlmeier, C, Barends, T.R.M, Meinhart, A.
Deposit date:2012-06-04
Release date:2012-06-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights into the Effector - Immunity System Tse1/Tsi1 from Pseudomonas aeruginosa.
Plos One, 7, 2012
4OSY
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BU of 4osy by Molmil
STRUCTURE of FULLY-CLEAVED GLYCINE-BOUND HUMAN L-ASPARAGINASE PROTEIN
Descriptor: GLYCINE, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-02-13
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Free glycine accelerates the autoproteolytic activation of human asparaginase.
Chem.Biol., 20, 2013
4OLJ
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BU of 4olj by Molmil
Crystal structure of Arg119Gln mutant of Peptidyl-tRNA Hydrolase from Acinetobacter Baumannii at 1.49 A resolution
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Peptidyl-tRNA hydrolase
Authors:Sikarwar, J, Dube, D, Kaushik, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-01-24
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of Arg119Gln mutant of Peptidyl-tRNA hydrolase from Acinetobacter Baumannii at 1.49 A resolution
to be published
4OO5
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BU of 4oo5 by Molmil
Crystal Structure of S-nitrosated Human Thioredoxin Mutant
Descriptor: Thioredoxin
Authors:The, J, Weichsel, A, Montfort, W.R.
Deposit date:2014-01-30
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal Structure of a Thioredoxin Mutant Displays a Dynamic N-terminal Loop Surrounding an S-nitrosation Site
To be Published
4F8V
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BU of 4f8v by Molmil
Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)
Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')
Authors:Kondo, J, Koganei, M, Kasahara, T.
Deposit date:2012-05-18
Release date:2012-08-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and specific binding mode of sisomicin to the bacterial ribosomal decoding site.
Acs Med.Chem.Lett., 3, 2012
4FBS
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Structure of monomeric NT from Euprosthenops australis Major Ampullate Spidroin 1 (MaSp1)
Descriptor: BROMIDE ION, Major ampullate spidroin 1
Authors:Askarieh, G, Hedhammar, M, Rising, A, Johansson, J, Knight, S.D.
Deposit date:2012-05-23
Release date:2012-08-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:pH-Dependent Dimerization of Spider Silk N-Terminal Domain Requires Relocation of a Wedged Tryptophan Side Chain
J.Mol.Biol., 2012
4OAU
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BU of 4oau by Molmil
Complete human RNase L in complex with biological activators.
Descriptor: 2-5A-dependent ribonuclease, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Han, Y, Donovan, J, Rath, S, Whitney, G, Chitrakar, A, Korennykh, A.
Deposit date:2014-01-06
Release date:2014-03-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response.
Science, 343, 2014
4FC4
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FNT family ion channel
Descriptor: Nitrite transporter NirC, octyl beta-D-glucopyranoside
Authors:Lue, W, Schwarzer, N, Du, J, Gerbig-Smentek, E, Andrade, S.L.A, Einsle, O.
Deposit date:2012-05-24
Release date:2012-11-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional characterization of the nitrite channel NirC from Salmonella typhimurium.
Proc.Natl.Acad.Sci.USA, 109, 2012
4FE5
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Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), HYPOXANTHINE, ...
Authors:Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T.
Deposit date:2012-05-29
Release date:2012-06-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine.
Nature, 432, 2004
4FIB
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BU of 4fib by Molmil
Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.
Descriptor: Uncharacterized protein ydhK
Authors:Vorobiev, S, Abashidze, M, Seetharaman, J, Mao, M, Xiao, R, Maglaqui, M, Owens, L.A, Cunningham, K, Zhao, L, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-06-08
Release date:2012-06-20
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Crystal structure of the ydhK protein from Bacillus subtilis.
To be Published
4FJ8
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BU of 4fj8 by Molmil
RB69 DNA polymerase ternary complex with dCTP/dT
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
Authors:Xia, S, Wang, J, Konigsberg, W.H.
Deposit date:2012-06-11
Release date:2012-12-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase.
J.Am.Chem.Soc., 135, 2013

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