Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42391 results

6TTL
DownloadVisualize
BU of 6ttl by Molmil
crystal structure of [FeFe]-hydrogenase CbA5H (partial) from Clostridium beijerinckii in Hinact state
Descriptor: IRON/SULFUR CLUSTER, [FeFe]-hydrogenase, dicarbonyl[bis(cyanide-kappaC)]-mu-(iminodimethanethiolatato-1kappaS:2kappaS)-mu-(oxomethylidene)diiron(2+)
Authors:Duan, J, Rutz, A, Hofmann, E, Happe, T.
Deposit date:2019-12-28
Release date:2020-12-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A safety cap protects hydrogenase from oxygen attack.
Nat Commun, 12, 2021
4Z9C
DownloadVisualize
BU of 4z9c by Molmil
EcPltAB Oxidized
Descriptor: PHOSPHATE ION, Pertussis toxin-like subunit ArtA, Subtilase cytotoxin subunit B-like protein
Authors:Littler, D.R, Johnson, M.D, Summers, R.J, Schembri, M.A, Rossjohn, J, Beddoe, T.
Deposit date:2015-04-10
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure and function analyses of a pertussis-like toxin from pathogenic Escherichia coli reveal a distinct mechanism of inhibition of trimeric G proteins.
J. Biol. Chem., 2017
6L8E
DownloadVisualize
BU of 6l8e by Molmil
Crystal structure of heterohexameric YoeB-YefM complex bound to 26bp-DNA
Descriptor: DNA (26-mer), YefM Antitoxin, YoeB toxin
Authors:Yue, J, Xue, L.
Deposit date:2019-11-06
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Distinct oligomeric structures of the YoeB-YefM complex provide insights into the conditional cooperativity of type II toxin-antitoxin system.
Nucleic Acids Res., 48, 2020
6L2Q
DownloadVisualize
BU of 6l2q by Molmil
Threonyl-tRNA synthetase from Salmonella enterica in complex with an inhibitor
Descriptor: (2S,3R)-2-azanyl-N-[(E)-4-[6,7-bis(chloranyl)-4-oxidanylidene-quinazolin-3-yl]but-2-enyl]-3-oxidanyl-butanamide, 1,2-ETHANEDIOL, Threonine--tRNA ligase, ...
Authors:Guo, J, Chen, B, Zhou, H.
Deposit date:2019-10-05
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of novel tRNA-amino acid dual-site inhibitors against threonyl-tRNA synthetase by fragment-based target hopping.
Eur.J.Med.Chem., 187, 2019
6TOW
DownloadVisualize
BU of 6tow by Molmil
Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis complexed with xylotetraose.
Descriptor: Reducing-end xylose-releasing exo-oligoxylanase Rex8A, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J.
Deposit date:2019-12-12
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity.
Febs J., 287, 2020
4EQL
DownloadVisualize
BU of 4eql by Molmil
Crystal Structure of GH3.12 in complex with AMP and salicylate
Descriptor: 2-HYDROXYBENZOIC ACID, 4-substituted benzoates-glutamate ligase GH3.12, ADENOSINE MONOPHOSPHATE
Authors:Westfall, C, Zubieta, C, Nanao, M, Herrmann, J, Jez, J.
Deposit date:2012-04-19
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for prereceptor modulation of plant hormones by GH3 proteins.
Science, 336, 2012
6L8X
DownloadVisualize
BU of 6l8x by Molmil
Crystal structure of Siraitia grosvenorii ugt transferase mutant2
Descriptor: Glycosyltransferase
Authors:Li, J, Shan, N, Yang, J.G, Liu, W.D, Sun, Y.X.
Deposit date:2019-11-07
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Efficient O-Glycosylation of Triterpenes Enabled by Protein Engineering of Plant Glycosyltransferase UGT74AC1
Acs Catalysis, 10, 2020
6LAF
DownloadVisualize
BU of 6laf by Molmil
Crystal structure of the core domain of Amuc_1100 from Akkermansia muciniphila
Descriptor: Amuc_1100, SULFATE ION
Authors:Wang, J, Xiang, R, Zhang, M, Wang, M.
Deposit date:2019-11-12
Release date:2020-08-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:The variable oligomeric state of Amuc_1100 from Akkermansia muciniphila.
J.Struct.Biol., 212, 2020
3FY0
DownloadVisualize
BU of 3fy0 by Molmil
Crystal structure of PAK1 kinase domain with ruthenium complex DW1
Descriptor: Ruthenium pyridocarbazole, Serine/threonine-protein kinase PAK 1
Authors:Maksimoska, J, Marmorstein, R, Meggers, E.
Deposit date:2009-01-21
Release date:2009-03-03
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Targeting Large Kinase Active Site with Rigid, Bulky Octahedral Ruthenium Complexes
J.Am.Chem.Soc., 130, 2008
6TOU
DownloadVisualize
BU of 6tou by Molmil
Rabies virus glycoprotein PH domain in complex with the scFv fragment of broadly neutralizing human antibody RVC20
Descriptor: CALCIUM ION, CHLORIDE ION, Glycoprotein,Glycoprotein, ...
Authors:Hellert, J, Rey, F.A.
Deposit date:2019-12-12
Release date:2020-02-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.587 Å)
Cite:Structure of the prefusion-locking broadly neutralizing antibody RVC20 bound to the rabies virus glycoprotein.
Nat Commun, 11, 2020
5HWV
DownloadVisualize
BU of 5hwv by Molmil
Crystal structure of PAS1 complexed with toluene
Descriptor: Sensor histidine kinase TodS, TOLUENE
Authors:Hwang, J, Koh, S.
Deposit date:2016-01-29
Release date:2016-03-02
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System.
J. Biol. Chem., 291, 2016
6TRH
DownloadVisualize
BU of 6trh by Molmil
Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis complexed with 3(3)-alpha-L-arabinofuranosyl-xylotetraose.
Descriptor: Reducing-end xylose-releasing exo-oligoxylanase Rex8A, alpha-L-arabinofuranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J.
Deposit date:2019-12-18
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity.
Febs J., 287, 2020
5HPE
DownloadVisualize
BU of 5hpe by Molmil
Phosphatase domain of PP5 bound to a phosphomimetic Cdc37 substrate peptide
Descriptor: COBALT HEXAMMINE(III), MANGANESE (II) ION, Serine/threonine-protein phosphatase 5,Hsp90 co-chaperone Cdc37
Authors:Oberoi, J, Mariotti, L, Vaughan, C.
Deposit date:2016-01-20
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural and functional basis of protein phosphatase 5 substrate specificity.
Proc.Natl.Acad.Sci.USA, 113, 2016
3FU9
DownloadVisualize
BU of 3fu9 by Molmil
Melanocarpus albomyces laccase crystal soaked (20 min) with 2,6-dimethoxyphenol
Descriptor: 2,6-dimethoxybenzene-1,4-diol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kallio, J.P, Hakulinen, N, Rouvinen, J.
Deposit date:2009-01-14
Release date:2009-09-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Function Studies of a Melanocarpus albomyces Laccase Suggest a Pathway for Oxidation of Phenolic Compounds.
J.Mol.Biol., 392, 2009
6LJI
DownloadVisualize
BU of 6lji by Molmil
X-ray structure of synthetic GB1 domain with mutations K10(DVA), T11V
Descriptor: Immunoglobulin G-binding protein G
Authors:Penmatsa, A, Chatterjee, J, Majumder, P, Khatri, B.
Deposit date:2019-12-16
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.843 Å)
Cite:Increasing protein stability by engineering the n -> pi * interaction at the beta-turn.
Chem Sci, 11, 2020
3T7I
DownloadVisualize
BU of 3t7i by Molmil
Crystal structure of Se-Met Rtt107p (residues 820-1070)
Descriptor: Regulator of Ty1 transposition protein 107
Authors:Li, X, Li, F, Wu, J, Shi, Y.
Deposit date:2011-07-30
Release date:2012-02-15
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair
J.Biol.Chem., 287, 2012
6TRJ
DownloadVisualize
BU of 6trj by Molmil
LEDGF/p75 IBD dimer
Descriptor: PC4 and SFRS1-interacting protein
Authors:Kugler, M, Brynda, J.
Deposit date:2019-12-19
Release date:2020-09-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Fine-tuning of the LEDGF/p75 interaction network by dimerization
Structure
6LDF
DownloadVisualize
BU of 6ldf by Molmil
Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96K AB5
Descriptor: CHLORIDE ION, HEME C, ZINC ION, ...
Authors:Song, W.J, Yu, J.
Deposit date:2019-11-21
Release date:2021-03-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes.
Chem Sci, 12, 2021
6LDE
DownloadVisualize
BU of 6lde by Molmil
Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96V AB5
Descriptor: CHLORIDE ION, HEME C, ZINC ION, ...
Authors:Song, W.J, Yu, J.
Deposit date:2019-11-21
Release date:2021-03-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes.
Chem Sci, 12, 2021
6LDG
DownloadVisualize
BU of 6ldg by Molmil
Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I AB5
Descriptor: CHLORIDE ION, HEME C, MAGNESIUM ION, ...
Authors:Song, W.J, Yu, J.
Deposit date:2019-11-21
Release date:2021-03-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes.
Chem Sci, 12, 2021
4ZIP
DownloadVisualize
BU of 4zip by Molmil
HIV-1 wild Type protease with GRL-0648A (a isophthalamide-derived P2-Ligand)
Descriptor: CHLORIDE ION, GLYCEROL, N-[(2,5-dimethyl-1,3-oxazol-4-yl)methyl]-N'-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]-N,5-dimethylbenzene-1,3-dicarboxamide, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2015-04-28
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Structure-based design, synthesis, X-ray studies, and biological evaluation of novel HIV-1 protease inhibitors containing isophthalamide-derived P2-ligands.
Bioorg.Med.Chem.Lett., 25, 2015
4E93
DownloadVisualize
BU of 4e93 by Molmil
Crystal structure of human Feline Sarcoma Viral Oncogene Homologue (v-FES)in complex with TAE684
Descriptor: 5-CHLORO-N-[2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN-1-YL]PHENYL]-N'-(2-PROPAN-2-YLSULFONYLPHENYL)PYRIMIDINE-2,4-DIAMINE, Tyrosine-protein kinase Fes/Fps
Authors:Filippakopoulos, P, Salah, E, Miduturu, C.V, Fedorov, O, Cooper, C, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Gray, N.S, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2012-03-20
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Small-Molecule Inhibitors of the c-Fes Protein-Tyrosine Kinase.
Chem.Biol., 19, 2012
3TCM
DownloadVisualize
BU of 3tcm by Molmil
Crystal Structure of Alanine Aminotransferase from Hordeum vulgare
Descriptor: Alanine aminotransferase 2, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Rydel, T.J, Sturman, E.J, Halls, C, Chen, S, Zeng, J, Evdokimov, A, Duff, S.M.G.
Deposit date:2011-08-09
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The Enzymology of alanine aminotransferase (AlaAT) isoforms from Hordeum vulgare and other organisms, and the HvAlaAT crystal structure.
Arch.Biochem.Biophys., 528, 2012
4ZP2
DownloadVisualize
BU of 4zp2 by Molmil
Crystal structure of E. coli multidrug transporter MdfA in complex with n-dodecyl-N,N-dimethylamine-N-oxide
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Multidrug transporter MdfA
Authors:Zhang, X.C, Heng, J, Zhao, Y, Wang, X.
Deposit date:2015-05-07
Release date:2015-08-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate-bound structure of the E. coli multidrug resistance transporter MdfA
Cell Res., 25, 2015
3FU8
DownloadVisualize
BU of 3fu8 by Molmil
Melanocarpus albomyces laccase crystal soaked (10 sec) with 2,6-dimethoxyphenol
Descriptor: 2,6-dimethoxyphenol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kallio, J.P, Hakulinen, N, Rouvinen, J.
Deposit date:2009-01-14
Release date:2009-09-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Function Studies of a Melanocarpus albomyces Laccase Suggest a Pathway for Oxidation of Phenolic Compounds.
J.Mol.Biol., 392, 2009

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon