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PDB: 42550 results

4S0M
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Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Sikarwar, J, Shukla, P.K, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2015-01-02
Release date:2015-02-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from Acinetobacter baumannii
To be Published
4TTT
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BU of 4ttt by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form - oxidized state 3
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2014-06-23
Release date:2015-01-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase
Proc.Natl.Acad.Sci.Usa, 2018
4S1K
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Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polyhedrin
Authors:Ginn, H.M, Messerschmidt, M, Ji, X, Zhang, H, Axford, D, Gildea, R.J, Winter, G, Brewster, A.S, Hattne, J, Wagner, A, Grimes, J.M, Evans, G, Sauter, N.K, Sutton, G, Stuart, D.I.
Deposit date:2015-01-14
Release date:2015-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data.
Nat Commun, 6, 2015
1XKU
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Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Decorin
Authors:Scott, P.G, McEwan, P.A, Dodd, C.M, Bergmann, E.M, Bishop, P.N, Bella, J.
Deposit date:2004-09-29
Release date:2004-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan
Proc.Natl.Acad.Sci.Usa, 101, 2004
4RKN
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Wolinella succinogenes octaheme sulfite reductase MccA, form II
Descriptor: COPPER (II) ION, DITHIONITE, MccA, ...
Authors:Hermann, B, Kern, M, La Pietra, L, Simon, J, Einsle, O.
Deposit date:2014-10-13
Release date:2015-02-04
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The octahaem MccA is a haem c-copper sulfite reductase.
Nature, 520, 2015
5FPH
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BU of 5fph by Molmil
The GTPase domains of the immunity-related Irga6 dimerize in a parallel head-to-head fashion
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, INTERFERON-INDUCIBLE GTPASE 1, MAGNESIUM ION, ...
Authors:Schulte, K, Pawlowski, N, Faelber, K, Froehlich, C, Howard, J, Daumke, O.
Deposit date:2015-11-30
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Immunity-Related Gtpase Irga6 Dimerizes in a Parallel Head-to-Head Fashion.
Bmc Biol., 14, 2016
8GYF
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BU of 8gyf by Molmil
Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (K192Y) in jellyfish Cytaeis uchidae from Biortus
Descriptor: 1,2-ETHANEDIOL, staygold(K192Y)
Authors:Wu, J, Wang, F, Gui, W, Cheng, W, Yang, Y.
Deposit date:2022-09-22
Release date:2023-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (K192Y) in jellyfish Cytaeis uchidae from Biortus
To Be Published
8GXI
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The crystal structure of SARS-CoV-2 main protease in complex with 14c
Descriptor: 3C-like proteinase nsp5, N-[(2S)-3-cyclohexyl-1-[[(2S,3R)-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide
Authors:Zhao, Y, Zhao, J, Shao, M, Yang, H, Rao, Z.
Deposit date:2022-09-20
Release date:2023-09-27
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:The crystal structure of SARS-CoV-2 main protease in complex with 14c
To Be Published
5FRR
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Structure of the Pds5-Scc1 complex and implications for cohesin function
Descriptor: SISTER CHROMATID COHESION PROTEIN PDS5
Authors:Muir, K.W, Kschonsak, M, Li, Y, Metz, J, Haering, C.H, Panne, D.
Deposit date:2015-12-22
Release date:2016-03-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (5.8 Å)
Cite:Structure of the Pds5-Scc1 Complex and Implications for Cohesin Function
Cell Rep., 14, 2016
1XS6
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BU of 1xs6 by Molmil
dCTP deaminase from Escherichia coli. E138A mutant enzyme in complex with dUTP
Descriptor: DEOXYURIDINE-5'-TRIPHOSPHATE, Deoxycytidine triphosphate deaminase, MAGNESIUM ION
Authors:Johansson, E, Fano, M, Bynck, J.H, Neuhard, J, Larsen, S, Sigurskjold, B.W, Christensen, U, Willemoes, M.
Deposit date:2004-10-18
Release date:2004-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of dCTP deaminase from Escherichia coli with bound substrate and product: reaction mechanism and determinants of mono- and bifunctionality for a family of enzymes
J.Biol.Chem., 280, 2005
4RMZ
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BU of 4rmz by Molmil
Crystal Structure of IRAK-4
Descriptor: 3-nitro-N-[1-phenyl-5-(piperidin-1-ylmethyl)-1H-benzimidazol-2-yl]benzamide, Interleukin-1 receptor-associated kinase 4
Authors:Johnstone, S, Sudom, A, Liu, J, Walker, N.P, Wang, Z.
Deposit date:2014-10-22
Release date:2016-01-13
Last modified:2016-03-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of IRAK-4 kinase in complex with inhibitors: a serine/threonine kinase with tyrosine as a gatekeeper
To be Published
1XLT
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BU of 1xlt by Molmil
Crystal structure of Transhydrogenase [(domain I)2:domain III] heterotrimer complex
Descriptor: NAD(P) transhydrogenase subunit alpha part 1, NAD(P) transhydrogenase subunit beta, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sundaresan, V, Chartron, J, Yamaguchi, M, Stout, C.D.
Deposit date:2004-09-30
Release date:2005-04-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Conformational Diversity in NAD(H) and Transhydrogenase Nicotinamide Nucleotide Binding Domains
J.Mol.Biol., 346, 2005
5FYI
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BU of 5fyi by Molmil
Crystal structure of human JMJD2A in complex with pyruvate
Descriptor: (2-hydroxyethoxy)acetaldehyde, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Nowak, R, Kopec, J, Johansson, C, Szykowska, A, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.
Deposit date:2016-03-07
Release date:2016-03-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.096 Å)
Cite:Crystal Structure of Human Jmjd2A in Complex with Pyruvate
To be Published
4TJY
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BU of 4tjy by Molmil
Crystal Structure of human Tankyrase 2 in complex with ABT-888.
Descriptor: 2-[(2S)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide, Tankyrase-2, ZINC ION
Authors:Qiu, W, Lam, R, Romanov, V, Gordon, R, Gebremeskel, S, Vodsedalek, J, Thompson, C, Beletskaya, I, Battaile, K.P, Pai, E.F, Chirgadze, N.Y.
Deposit date:2014-05-25
Release date:2014-10-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2.
Acta Crystallogr.,Sect.D, 70, 2014
8GXV
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BU of 8gxv by Molmil
Structure of a bacterial serpin Choloropin derived from Cholorobium limicola
Descriptor: GLYCEROL, Proteinase inhibitor I4 serpin, ZINC ION
Authors:Zhou, A, Xu, J.
Deposit date:2022-09-21
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Climpin, a Novel Bacterial a Serpin inducing a Broad Range of Proteases and Regulated by Heparin and DNA.
To Be Published
5FYH
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BU of 5fyh by Molmil
Crystal structure of human JMJD2A in complex with fumarate
Descriptor: 1,2-ETHANEDIOL, FUMARIC ACID, LYSINE-SPECIFIC DEMETHYLASE 4A, ...
Authors:Nowak, R, Kopec, J, Johansson, C, Szykowska, A, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.
Deposit date:2016-03-07
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:Crystal Structure of Human Jmjd2A in Complex with Fumarate
To be Published
8HGN
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BU of 8hgn by Molmil
Crystal structure of MeaC (Mesaconyl-CoA hydratase)
Descriptor: Beta-methylmalyl-CoA dehydratase, D-MALATE
Authors:Ahn, J.W, Hong, J, Kim, K.J.
Deposit date:2022-11-15
Release date:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Mesaconyl-CoA Hydratase from Methylorubrum extorquens CM4.
J Microbiol Biotechnol., 33, 2023
5FYC
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BU of 5fyc by Molmil
Crystal structure of human JMJD2A in complex with succinate
Descriptor: 1,2-ETHANEDIOL, FUMARIC ACID, LYSINE-SPECIFIC DEMETHYLASE 4A, ...
Authors:Nowak, R, Kopec, J, Johansson, C, Szykowska, A, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.
Deposit date:2016-03-07
Release date:2016-03-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.261 Å)
Cite:Crystal Structure of Human Jmjd2A in Complex with Succinate
To be Published
1BZB
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BU of 1bzb by Molmil
GLYCOSYLATED EEL CALCITONIN
Descriptor: PROTEIN (CALCITONIN), alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Hashimoto, Y, Toma, K, Nishikido, J, Yamamoto, K, Haneda, K, Inazu, T, Valentine, K, Opella, S.J.
Deposit date:1998-10-27
Release date:1998-11-11
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1C5Y
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BU of 1c5y by Molmil
STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR
Descriptor: CITRATE ANION, PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR), THIENO[2,3-B]PYRIDINE-2-CARBOXAMIDINE
Authors:Katz, B.A, Mackman, R, Luong, C, Radika, K, Martelli, A, Sprengeler, P.A, Wang, J, Chan, H, Wong, L.
Deposit date:1999-12-22
Release date:2000-12-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator.
Chem.Biol., 7, 2000
4RR4
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BU of 4rr4 by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with DH03A367
Descriptor: 2-chloro-N-[3-(4-{[(2Z)-2-cyano-3-cyclopropyl-3-hydroxyprop-2-enoyl]amino}phenoxy)phenyl]-4-methyl-1,3-thiazole-5-carboxamide, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Zhu, L, Ren, X, Zhu, J, Li, H.
Deposit date:2014-11-06
Release date:2015-11-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with DH03A367
TO BE PUBLISHED
4RRP
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BU of 4rrp by Molmil
Crystal Structure of the Fab complexed with antigen Asf1p, Northeast Structural Genomics Consortium (NESG) Target PdR16
Descriptor: Antigen Asf1p, DI(HYDROXYETHYL)ETHER, Fab antibody, ...
Authors:Kuzin, A, Lew, S, Seetharaman, J, Mao, L, Xiao, R, Oconnell, P.T, Maglaqui, M, Bailey, L, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS), Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-11-06
Release date:2014-12-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structure of the Fab complexed with antigen Asf1p, Northeast Structural Genomics Consortium (NESG) Target PdR16
To be Published
5FUV
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BU of 5fuv by Molmil
catalytic domain of Thymidine kinase from Trypanosoma brucei with dThd
Descriptor: GLYCEROL, PHOSPHATE ION, THYMDINE KINASE, ...
Authors:Timm, J, Valente, M, Castillo-Acosta, V, Balzarini, T, Nettleship, J.E, Rada, H, Wilson, K.S, Gonzalez-Pacanowska, D.
Deposit date:2016-01-31
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cell Cycle Regulation and Novel Structural Features of Thymidine Kinase, an Essential Enzyme in Trypanosoma Brucei.
Mol.Microbiol., 102, 2016
1XO5
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BU of 1xo5 by Molmil
Crystal structure of CIB1, an EF-hand, integrin and kinase-binding protein
Descriptor: CALCIUM ION, Calcium and integrin-binding protein 1
Authors:Gentry, H.R, Singer, A.U, Betts, L, Yang, C, Ferrara, J.D, Parise, L.V, Sondek, J.
Deposit date:2004-10-05
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and Biochemical Characterization of CIB1 Delineates a New Family of EF-hand-containing Proteins
J.Biol.Chem., 280, 2005
4RW3
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Structural insights into substrate binding of brown spider venom class II phospholipases D
Descriptor: D-MYO-INOSITOL-1-PHOSPHATE, DECANOIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Coronado, M.A, Ullah, A, da Silva, L.S, Chaves-Moreira, D, Vuitika, L, Chaim, O.M, Veiga, S.S, Chahine, J, Murakami, M.T, Arni, R.K.
Deposit date:2014-12-01
Release date:2015-06-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.
Curr Protein Pept Sci, 16, 2015

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