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PDB: 42550 results

5MNX
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Neutron structure of cationic trypsin in complex with 2-aminopyridine
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:NEUTRON DIFFRACTION (1.42 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MO2
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Neutron structure of cationic trypsin in complex with N-amidinopiperidine
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ...
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-02-28
Last modified:2024-01-17
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
5MO8
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BU of 5mo8 by Molmil
Crystal Structure of CK2alpha with N-(3-(((2-chloro-[1,1'-biphenyl]-4-yl)methyl)amino)propyl)methanesulfonamide bound
Descriptor: 3-[[3-[3-[(3-chloranyl-4-phenyl-phenyl)methylamino]propylamino]-3-oxidanylidene-propanoyl]amino]benzoic acid, ACETATE ION, Casein kinase II subunit alpha, ...
Authors:Brear, P, De Fusco, C, Georgiou, K, Iegre, J, Sore, H, Hyvonen, M, Spring, D.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A fragment-based approach leading to the discovery of a novel binding site and the selective CK2 inhibitor CAM4066.
Bioorg. Med. Chem., 25, 2017
2X53
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Structure of the phage p2 baseplate in its activated conformation with Sr
Descriptor: ORF15, ORF16, PUTATIVE RECEPTOR BINDING PROTEIN, ...
Authors:Sciara, G, Bebeacua, C, Bron, P, Tremblay, D, Ortiz-Lombardia, M, Lichiere, J, van Heel, M, Campanacci, V, Moineau, S, Cambillau, C.
Deposit date:2010-02-05
Release date:2010-02-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of Lactococcal Phage P2 Baseplate and its Mechanism of Activation.
Proc.Natl.Acad.Sci.USA, 107, 2010
6HBH
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BU of 6hbh by Molmil
Echovirus 18 A-particle
Descriptor: Echovirus 18 capsid protein 1, Echovirus 18 capsid protein 2, Echovirus 18 capsid protein 3
Authors:Buchta, D, Fuzik, T, Hrebik, D, Levdansky, Y, Moravcova, J, Plevka, P.
Deposit date:2018-08-10
Release date:2019-03-20
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Enterovirus particles expel capsid pentamers to enable genome release.
Nat Commun, 10, 2019
2XAM
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BU of 2xam by Molmil
Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with ADP and IP6.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, INOSITOL-PENTAKISPHOSPHATE 2-KINASE, ...
Authors:Gonzalez, B, Banos-Sanz, J.I, Villate, M, Brearley, C.A, Sanz-Aparicio, J.
Deposit date:2010-03-31
Release date:2010-05-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase is a Distant Ipk Member with a Singular Inositide Binding Site for Axial 2-Oh Recognition.
Proc.Natl.Acad.Sci.USA, 107, 2010
5MFR
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BU of 5mfr by Molmil
The crystal structure of E. coli Aminopeptidase N in complex with 7-amino-5,7,8,9-tetrahydrobenzocyclohepten-6-one
Descriptor: Aminopeptidase N, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Peng, G, Olieric, V, McEwen, A.G, Schmitt, C, Albrecht, S, Cavarelli, J, Tarnus, C.
Deposit date:2016-11-18
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Insight into the remarkable affinity and selectivity of the aminobenzosuberone scaffold for the M1 aminopeptidases family based on structure analysis.
Proteins, 85, 2017
2WRB
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BU of 2wrb by Molmil
the structure of influenza H2 human singapore hemagglutinin with avian receptor
Descriptor: HEMAGGLUTININ, N-acetyl-alpha-neuraminic acid
Authors:Liu, J, Stevens, D.J, Haire, L.F, Walker, P.A, Coombs, P.J, Russell, R.J, Gamblin, S.J, Skehel, J.J.
Deposit date:2009-09-01
Release date:2009-09-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:From the Cover: Structures of Receptor Complexes Formed by Hemagglutinins from the Asian Influenza Pandemic of 1957.
Proc.Natl.Acad.Sci.USA, 106, 2009
5MGH
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BU of 5mgh by Molmil
Crystal structure of pathogenic mutants of human mitochodnrial PheRS
Descriptor: PHENYLALANINE, Phenylalanine--tRNA ligase, mitochondrial
Authors:Kartvelishvili, E, Tworowski, D, Vernon, H, Chrzanowska-Lightowlers, Z, Moor, N, Wang, J, Wong, L.-J, Safro, M.
Deposit date:2016-11-21
Release date:2017-05-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Kinetic and structural changes in HsmtPheRS, induced by pathogenic mutations in human FARS2.
Protein Sci., 26, 2017
6HYD
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BU of 6hyd by Molmil
Rea1 Wild type ADP state (tail part)
Descriptor: Midasin,Midasin,Midasin
Authors:Sosnowski, P, Urnavicius, L, Boland, A, Fagiewicz, R, Busselez, J, Papai, G, Schmidt, H.
Deposit date:2018-10-19
Release date:2018-12-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The CryoEM structure of the Saccharomyces cerevisiae ribosome maturation factor Rea1.
Elife, 7, 2018
2X2R
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BU of 2x2r by Molmil
Crystal structure of human kinesin Eg5 in complex with (R)-2-amino-3-((4-chlorophenyl)diphenylmethylthio)propanoic acid
Descriptor: (2R)-2-AMINO-3-[(2R)-2-METHYL-1,1-DIPHENYL-BUTYL]SULFANYL-PROPANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, KINESIN-LIKE PROTEIN KIF11, ...
Authors:Kaan, H.Y.K, Weiss, J, Menger, D, Ulaganathan, V, Laggner, C, Popowycz, F, Joseph, B, Kozielski, F.
Deposit date:2010-01-15
Release date:2011-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Activity Relationship and Multidrug Resistance Study of New S-Trityl-L-Cysteine Derivatives as Inhibitors of Eg5.
J.Med.Chem., 54, 2011
1D1O
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BU of 1d1o by Molmil
COOPERATIVITY IN EF-HAND CA2+-BINDING PROTEINS: EVIDENCE OF SITE-SITE COMMUNICATION FROM BINDING-INDUCED CHANGES IN STRUCTURE AND DYNAMICS OF N56A CALBINDIN D9K
Descriptor: CALBINDIN D9K
Authors:Maler, L, Blankenship, J, Rance, M, Chazin, W.J.
Deposit date:1999-09-20
Release date:2000-03-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Site-site communication in the EF-hand Ca2+-binding protein calbindin D9k.
Nat.Struct.Biol., 7, 2000
5MJ3
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BU of 5mj3 by Molmil
INTERLEUKIN-23 COMPLEX WITH AN ANTAGONISTIC ALPHABODY, CRYSTAL FORM 1
Descriptor: ALPHABODY MA12, Interleukin-12 subunit beta, Interleukin-23 subunit alpha, ...
Authors:Desmet, J, Verstraete, K, Bloch, Y, Lorent, E, Wen, Y, Devreese, B, Vandenbroucke, K, Loverix, S, Hettmann, T, Deroo, S, Somers, K, Hendrikx, P, Lasters, I, Savvides, S.N.
Deposit date:2016-11-29
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Basis Of Il-23 Antagonism By An Alphabody Protein Scaffold.
Nat Commun, 5, 2014
2X4D
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BU of 2x4d by Molmil
Crystal structure of human phospholysine phosphohistidine inorganic pyrophosphate phosphatase LHPP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Vollmar, M, Gileadi, C, Guo, K, Savitsky, P, Muniz, J.R.C, Yue, W, Allerston, C, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Kavanagh, K.L, Oppermann, U.
Deposit date:2010-01-29
Release date:2010-03-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of Human Phospholysine Phosphohistidine Inorganic Pyrophosphate Phosphatase Lhpp
To be Published
5MKD
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BU of 5mkd by Molmil
Crystal structure of Bacillus subtilis Ywea
Descriptor: Ywea
Authors:Carrington, J, van Aalten, D.
Deposit date:2016-12-03
Release date:2017-01-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystal structure of Bacillus subtilis Ywea
To Be Published
5NOA
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BU of 5noa by Molmil
Polysaccharide Lyase BACCELL_00875
Descriptor: Family 88 glycosyl hydrolase
Authors:Cartmell, A, Munoz-Munoz, J, Terrapon, N, Basle, A, Henrissat, B, Gilbert, H.J.
Deposit date:2017-04-11
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins.
J. Biol. Chem., 292, 2017
2XAZ
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BU of 2xaz by Molmil
Ribonucleotide reductase Y730NO2Y and C439S modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-04-01
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
6HGS
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BU of 6hgs by Molmil
Crystal Structure of Human APRT wild type in complex with GMP
Descriptor: Adenine phosphoribosyltransferase, GUANOSINE-5'-MONOPHOSPHATE
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2018-08-23
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.
J.Biol.Chem., 294, 2019
5M8J
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BU of 5m8j by Molmil
Crystal structure of Eremococcus coleocola manganese transporter mutant H236A
Descriptor: Divalent metal cation transporter MntH
Authors:Manatschal, C, Ehrnstorfer, I.A, Arnold, F.M, Laederach, J, Dutzler, R.
Deposit date:2016-10-29
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family.
Nat Commun, 8, 2017
6HHC
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BU of 6hhc by Molmil
Allosteric Inhibition as a new mode of Action for BAY 1213790, a Neutralizing Antibody Targeting the Activated form of Coagulation Factor XI
Descriptor: Coagulation factor XI, DIMETHYL SULFOXIDE, FXIA ANTIBODY FAB HEAVY CHAIN, ...
Authors:Schaefer, M, Buchmueller, A, Dittmer, F, Strassburger, J, Wilmen, A.
Deposit date:2018-08-27
Release date:2019-09-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Allosteric Inhibition as a New Mode of Action for BAY 1213790, a Neutralizing Antibody Targeting the Activated Form of Coagulation Factor XI.
J.Mol.Biol., 431, 2019
5MUY
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BU of 5muy by Molmil
Structure of a C-terminal domain of a reptarenavirus L protein with m7GTP
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, L protein
Authors:Rosenthal, M, Gogrefe, N, Reguera, J, Vogel, D, Rauschenberger, B, Cusack, S, Gunther, S, Reindl, S.
Deposit date:2017-01-14
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural insights into reptarenavirus cap-snatching machinery.
PLoS Pathog., 13, 2017
5M95
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BU of 5m95 by Molmil
STAPHYLOCOCCUS CAPITIS DIVALENT METAL ION TRANSPORTER (DMT) IN COMPLEX WITH MANGANESE
Descriptor: CAMELID ANTIBODY FRAGMENT, NANOBODY, Divalent metal cation transporter MntH, ...
Authors:Ehrnstorfer, I.A, Geertsma, E.R, Pardon, E, Steyaert, J, Dutzler, R.
Deposit date:2016-10-31
Release date:2016-11-30
Last modified:2019-09-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structure Of A Slc11 (Nramp) Transporter Reveals The Basis For Transition-Metal Ion Transport.
Nat.Struct.Mol.Biol., 21, 2014
2XAN
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BU of 2xan by Molmil
inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with AMP PNP and IP5
Descriptor: INOSITOL-PENTAKISPHOSPHATE 2-KINASE, MAGNESIUM ION, MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE, ...
Authors:Gonzalez, B, Banos-Sanz, J.I, Villate, M, Brearley, C.A, Sanz-Aparicio, J.
Deposit date:2010-03-31
Release date:2010-05-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase is a Distant Ipk Member with a Singular Inositide Binding Site for Axial 2-Oh Recognition.
Proc.Natl.Acad.Sci.USA, 107, 2010
6HWM
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BU of 6hwm by Molmil
Structure of Thermus thermophilus ClpP in complex with bortezomib
Descriptor: ATP-dependent Clp protease proteolytic subunit, DI(HYDROXYETHYL)ETHER, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE
Authors:Felix, J, Schanda, P, Fraga, H, Morlot, C.
Deposit date:2018-10-12
Release date:2019-09-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanism of the allosteric activation of the ClpP protease machinery by substrates and active-site inhibitors.
Sci Adv, 5, 2019
5MDN
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Structure of the family B DNA polymerase from the hyperthermophilic archaeon Pyrobaculum calidifontis
Descriptor: DNA polymerase, MAGNESIUM ION
Authors:Guo, J, Zhang, W, Coker, A.R, Wood, S.P, Cooper, J.B, Rashid, N, Akhtar, M.
Deposit date:2016-11-12
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the family B DNA polymerase from the hyperthermophilic archaeon Pyrobaculum calidifontis.
Acta Crystallogr D Struct Biol, 73, 2017

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