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PDB: 42908 results

2V3R
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Hypocrea jecorina Cel7A in complex with (S)-dihydroxy-phenanthrenolol
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{[(2S)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL, COBALT (II) ION, ...
Authors:Fagerstrom, A, Sandgren, M, Berg, U, Stahlberg, J.
Deposit date:2007-06-21
Release date:2008-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Study of the Chiral Recognition Mechanisms of Cellobiohydrolase Cel7A for Ligands Based on the Beta-Blocker Motif: Crystal Structures, Microcalorimetry and Computational Modelling of Cel7A-Inhibitor Complexes.
To be Published
1RQJ
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BU of 1rqj by Molmil
Active Conformation of Farnesyl Pyrophosphate Synthase Bound to Isopentyl Pyrophosphate and Risedronate
Descriptor: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Geranyltranstransferase, ...
Authors:Hosfield, D.J, Zhang, Y, Dougan, D.R, Brooun, A, Tari, L.W, Swanson, R.V, Finn, J.
Deposit date:2003-12-05
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for bisphosphonate-mediated inhibition of isoprenoid biosynthesis
J.Biol.Chem., 279, 2004
1RCE
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BULLFROG RED CELL L FERRITIN SULFATE/MN/PH 6.3
Descriptor: L FERRITIN, TRIMETHYL GLYCINE
Authors:Trikha, J, Theil, E.C, Allewell, N.M.
Deposit date:1995-08-04
Release date:1995-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:High resolution crystal structures of amphibian red-cell L ferritin: potential roles for structural plasticity and solvation in function.
J.Mol.Biol., 248, 1995
2VE9
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BU of 2ve9 by Molmil
Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa)
Descriptor: 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3', DNA TRANSLOCASE FTSK, ...
Authors:Lowe, J, Allen, M.D, Sherratt, D.J.
Deposit date:2007-10-17
Release date:2008-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Mechanism of Sequence-Directed DNA Loading and Translocation by Ftsk.
Mol.Cell, 31, 2008
2NB7
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BU of 2nb7 by Molmil
Solution structure of N-terminal extramembrane domain of SH protein
Descriptor: Small hydrophobic protein
Authors:Li, Y, To, J, Surya, W, Torres, J.
Deposit date:2016-01-26
Release date:2016-02-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
1RCC
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BU of 1rcc by Molmil
BULLFROG RED CELL L FERRITIN TARTRATE/MG/PH 5.5
Descriptor: L FERRITIN, TRIMETHYL GLYCINE
Authors:Trikha, J, Theil, E.C, Allewell, N.M.
Deposit date:1995-08-04
Release date:1995-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:High resolution crystal structures of amphibian red-cell L ferritin: potential roles for structural plasticity and solvation in function.
J.Mol.Biol., 248, 1995
2VCZ
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BU of 2vcz by Molmil
Complex structure of prostaglandin D2 synthase at 1.95A.
Descriptor: 3-(4-nitrophenyl)-1H-pyrazole, GLUTATHIONE, GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE
Authors:Hohwy, M, Spadola, L, Lundquist, B, von Wachenfeldt, K, Persdotter, S, Hawtin, P, Dahmen, J, Groth-Clausen, I, Folmer, R.H.A, Edman, K.
Deposit date:2007-09-28
Release date:2008-04-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design.
J.Med.Chem., 51, 2008
9BEW
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BU of 9bew by Molmil
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Descriptor: 10-1074 heavy chain, 10-1074 light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2024-04-16
Release date:2024-07-31
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Design of soluble HIV-1 envelope trimers free of covalent gp120-gp41 bonds with prevalent native-like conformation.
Cell Rep, 43, 2024
8ZMV
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BU of 8zmv by Molmil
Structure of a triple-helix region of human Collagen type XVII from Trautec
Descriptor: collagen type XVII
Authors:Chu, Y, Zhai, Y, Fan, X, Fu, S, Li, J, Wu, X, Cai, H, Wang, X, Li, D, Feng, P, Cao, K, Qian, S.
Deposit date:2024-05-24
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of a triple-helix region of human Collagen type XVII from Trautec
To Be Published
1XQP
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BU of 1xqp by Molmil
Crystal structure of 8-oxoguanosine complexed Pa-AGOG, 8-oxoguanine DNA glycosylase from Pyrobaculum aerophilum
Descriptor: 2'-DEOXY-8-OXOGUANOSINE, 8-oxoguanine DNA glycosylase
Authors:Lingaraju, G.M, Sartori, A.A, Kostrewa, D, Prota, A.E, Jiricny, J, Winkler, F.K.
Deposit date:2004-10-13
Release date:2004-11-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:A DNA glycosylase from Pyrobaculum aerophilum with an 8-oxoguanine binding mode and a noncanonical helix-hairpin-helix structure
Structure, 13, 2005
2VJ3
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BU of 2vj3 by Molmil
Human Notch-1 EGFs 11-13
Descriptor: CALCIUM ION, CHLORIDE ION, NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1, ...
Authors:Johnson, S, Cordle, J, Tay, J.Z, Roversi, P, Lea, S.M.
Deposit date:2007-12-06
Release date:2008-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Conserved Face of the Jagged/Serrate Dsl Domain is Involved in Notch Trans-Activation and Cis-Inhibition.
Nat.Struct.Mol.Biol., 15, 2008
6I5C
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BU of 6i5c by Molmil
Long wavelength native-SAD phasing of Tubulin-Stathmin-TTL complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Basu, S, Olieric, V, Matsugaki, N, Kawano, Y, Takashi, T, Huang, C.Y, Leonarski, F, Yamada, Y, Vera, L, Olieric, N, Basquin, J, Wojdyla, J.A, Diederichs, K, Yamamoto, M, Bunk, O, Wang, M.
Deposit date:2018-11-13
Release date:2019-03-13
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Long-wavelength native-SAD phasing: opportunities and challenges.
Iucrj, 6, 2019
2V7B
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BU of 2v7b by Molmil
Crystal structures of a benzoate CoA ligase from Burkholderia xenovorans LB400
Descriptor: BENZOATE-COENZYME A LIGASE, BENZOIC ACID
Authors:J Boulanger, M, Bains, J.
Deposit date:2007-07-27
Release date:2007-10-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Biochemical and Structural Characterization of the Paralogous Benzoate Coa Ligases from Burkholderia Xenovorans Lb400: Defining the Entry Point Into the Novel Benzoate Oxidation (Box) Pathway.
J.Mol.Biol., 373, 2007
8U7L
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BU of 8u7l by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor GZD824
Descriptor: 4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-3-[(1H-pyrazolo[3,4-b]pyridin-5-yl)ethynyl]benzamide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-15
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
8U8B
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BU of 8u8b by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor rebastinib
Descriptor: 4-[4-({[3-tert-butyl-1-(quinolin-6-yl)-1H-pyrazol-5-yl]carbamoyl}amino)-3-fluorophenoxy]-N-methylpyridine-2-carboxamide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-16
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
1RCI
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BU of 1rci by Molmil
BULLFROG RED CELL L FERRITIN TARTRATE/MG/PH 5.5
Descriptor: L FERRITIN, TRIMETHYL GLYCINE
Authors:Trikha, J, Theil, E.C, Allewell, N.M.
Deposit date:1995-08-04
Release date:1995-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:High resolution crystal structures of amphibian red-cell L ferritin: potential roles for structural plasticity and solvation in function.
J.Mol.Biol., 248, 1995
2V7D
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BU of 2v7d by Molmil
14-3-3 protein zeta in complex with Thr758 phosphorylated integrin beta2 peptide
Descriptor: 14-3-3 PROTEIN ZETA/DELTA, INTEGRIN BETA CHAIN, BETA 2 VARIANT
Authors:Takala, H, Ylanne, J.
Deposit date:2007-07-30
Release date:2008-06-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Beta2 Integrin Phosphorylation on Thr758 Acts as a Molecular Switch to Regulate 14-3-3 and Filamin Binding.
Blood, 112, 2008
2VD0
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BU of 2vd0 by Molmil
Complex structure of prostaglandin D2 synthase at 2.2A.
Descriptor: 2-{[(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoyl]amino}benzoic acid, GLUTATHIONE, GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE, ...
Authors:Hohwy, M, Spadola, L, Lundquist, B, von Wachenfeldt, K, Persdotter, S, Hawtin, P, Dahmen, J, Groth-Clausen, I, Folmer, R.H.A, Edman, K.
Deposit date:2007-09-28
Release date:2008-04-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design.
J.Med.Chem., 51, 2008
8U8A
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BU of 8u8a by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor ponatinib
Descriptor: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-16
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
2JDN
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BU of 2jdn by Molmil
Mutant (S22A) of Pseudomonas aeruginosa lectin II (PA-IIL) complexed with methyl-a-L-mannopyranoside
Descriptor: CALCIUM ION, FUCOSE-BINDING LECTIN PA-IIL, SULFATE ION, ...
Authors:Adam, J, Pokorna, M, Sabin, C, Mitchell, E.P, Imberty, A, Wimmerova, M.
Deposit date:2007-01-11
Release date:2007-06-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Engineering of Pa-Iil Lectin from Pseudomonas Aeruginosa - Unravelling the Role of the Specificity Loop for Sugar Preference.
Bmc Struct.Biol., 7, 2007
3RKD
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BU of 3rkd by Molmil
Hepatitis E Virus E2s domain (Genotype I) in complex with a neutralizing antibody
Descriptor: Capsid protein, Monoclonal Antibody, Heavy Chain, ...
Authors:Tang, X.H, Sivaraman, J.
Deposit date:2011-04-18
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the neutralization and genotype specificity of hepatitis E virus
Proc.Natl.Acad.Sci.USA, 108, 2011
2V17
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BU of 2v17 by Molmil
Structure of the complex of antibody MN423 with a fragment of tau protein
Descriptor: MONOCLONAL ANTIBODY FAB FRAGMENT MN423, PEPTIDE FRAGMENT
Authors:Sevcik, J, Skrabana, R, Csokova, N, Dvorsky, R, Novak, M.
Deposit date:2007-05-22
Release date:2007-12-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-Ray Structure of the Phf Core C-Terminus: Insight Into the Folding of the Intrinsically Disordered Protein Tau in Alzheimer'S Disease.
FEBS Lett., 581, 2007
2JDU
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BU of 2jdu by Molmil
Mutant (G24N) of Pseudomonas aeruginosa lectin II (PA-IIL) complexed with methyl-a-L-fucopyranoside
Descriptor: CALCIUM ION, FUCOSE-BINDING LECTIN PA-IIL, GLYCEROL, ...
Authors:Adam, J, Pokorna, M, Sabin, C, Mitchell, E.P, Imberty, A, Wimmerova, M.
Deposit date:2007-01-12
Release date:2007-06-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Engineering of Pa-Iil Lectin from Pseudomonas Aeruginosa - Unravelling the Role of the Specificity Loop for Sugar Preference.
Bmc Struct.Biol., 7, 2007
3L2C
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BU of 3l2c by Molmil
Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA
Descriptor: FOXO consensus binding sequence, minus strand, plus strand, ...
Authors:Boura, E, Silhan, J, Sulc, M, Brynda, J, Obsilova, V, Obsil, T.
Deposit date:2009-12-15
Release date:2009-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.868 Å)
Cite:Structure of the human FOXO4-DBD-DNA complex at 1.9 A resolution reveals new details of FOXO binding to the DNA
Acta Crystallogr.,Sect.D, 66, 2010
9FSE
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BU of 9fse by Molmil
Human ROR2 cysteine-rich domain (CRD) and Kringle domain
Descriptor: SULFATE ION, Tyrosine-protein kinase transmembrane receptor ROR2
Authors:Griffiths, S.C, Tan, J, Wagner, A, Blazer, L.L, Adams, J.J, Srinivasan, S, Moghisaei, S, Sidhu, S.S, Siebold, C, Ho, H.H.
Deposit date:2024-06-20
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structure and function of the ROR2 cysteine-rich domain in vertebrate noncanonical WNT5A signaling.
Elife, 13, 2024

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