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PDB: 395 件
6L38
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X-ray structure of human PPARalpha ligand binding domain-GW9662-gemfibrozil co-crystals obtained by delipidation and co-crystallization
分子名称: 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2019-10-09
公開日2020-11-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.761 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX4
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X-ray structure of human PPARalpha ligand binding domain-fenofibric acid co-crystals obtained by delipidation and co-crystallization
分子名称: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
2Z3Z
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BU of 2z3z by Molmil
Prolyl tripeptidyl aminopeptidase mutant E636A complexd with an inhibitor
分子名称: Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID
著者Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-06-09
公開日2008-02-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
6LX9
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BU of 6lx9 by Molmil
X-ray structure of human PPARalpha ligand binding domain-arachidonic acid co-crystals obtained by delipidation and cross-seeding
分子名称: ARACHIDONIC ACID, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX5
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BU of 6lx5 by Molmil
X-ray structure of human PPARalpha ligand binding domain-ciprofibrate co-crystals obtained by delipidation and co-crystallization
分子名称: 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX6
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BU of 6lx6 by Molmil
X-ray structure of human PPARalpha ligand binding domain-palmitic acid co-crystals obtained by delipidation and cross-seeding
分子名称: GLYCEROL, PALMITIC ACID, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LXA
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BU of 6lxa by Molmil
X-ray structure of human PPARalpha ligand binding domain-eicosapentaenoic acid (EPA) co-crystals obtained by delipidation and cross-seeding
分子名称: 5,8,11,14,17-EICOSAPENTAENOIC ACID, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
2ZKY
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BU of 2zky by Molmil
Crystal structure of human Cu-Zn superoxide dismutase mutant G93A
分子名称: Superoxide dismutase [Cu-Zn], ZINC ION
著者Yoshikawa, S, Kukimoto-Niino, M, Ito, K, Shirouzu, M, Urushitani, M, Takahashi, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-31
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of human Cu-Zn superoxide dismutase mutant G93A
To be Published
3ASU
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BU of 3asu by Molmil
Crystal structure of serine dehydrogenase from Escherichia coli
分子名称: Short-chain dehydrogenase/reductase SDR
著者Yamazawa, R, Nakajima, Y, Yoshimoto, T, Ito, K.
登録日2010-12-21
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of serine dehydrogenase from Escherichia coli: important role of the C-terminal region for closed-complex formation.
J.Biochem., 149, 2011
2Z3W
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BU of 2z3w by Molmil
Prolyl tripeptidyl aminopeptidase mutant E636A
分子名称: Dipeptidyl aminopeptidase IV, GLYCEROL, SULFATE ION
著者Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-06-07
公開日2008-02-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2ZKX
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BU of 2zkx by Molmil
Crystal structure of human Cu-Zn superoxide dismutase mutant G85R in space group I212121
分子名称: COPPER (I) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Yoshikawa, S, Kukimoto-Niino, M, Ito, K, Chen, L, Fu, Z.Q, Chrzas, J, Wang, B.C, Shirouzu, M, Urushitani, M, Takahashi, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-31
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Crystal structure of human Cu-Zn superoxide dismutase mutant G85R in space group I212121
To be Published
3AQP
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BU of 3aqp by Molmil
Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
分子名称: Probable SecDF protein-export membrane protein
著者Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
2ZJS
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BU of 2zjs by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment
分子名称: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ...
著者Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O.
登録日2008-03-08
公開日2008-10-14
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
2ZKW
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BU of 2zkw by Molmil
Crystal structure of human Cu-Zn superoxide dismutase mutant G85R in space group P21
分子名称: COPPER (I) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Yoshikawa, S, Kukimoto-Niino, M, Ito, K, Chen, L, Fu, Z.Q, Chrzas, J, Wang, B.C, Shirouzu, M, Urushitani, M, Takahashi, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-31
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human Cu-Zn superoxide dismutase mutant G85R in space group P21
To be Published
3VMF
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BU of 3vmf by Molmil
Archaeal protein
分子名称: Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Kobayashi, K, Saito, K, Ishitani, R, Ito, K, Nureki, O.
登録日2011-12-12
公開日2012-07-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for translation termination by archaeal RF1 and GTP-bound EF1alpha complex
Nucleic Acids Res., 40, 2012
2DCM
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BU of 2dcm by Molmil
The Crystal Structure of S603A Mutated Prolyl Tripeptidyl Aminopeptidase Complexed with Substrate
分子名称: GLYCYLALANYL-N-2-NAPHTHYL-L-PROLINEAMIDE, dipeptidyl aminopeptidase IV, putative
著者Nakajima, Y, Ito, K, Xu, Y, Yamada, N, Onohara, Y, Yoshimoto, T.
登録日2006-01-09
公開日2006-09-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DQ6
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BU of 2dq6 by Molmil
Crystal Structure of Aminopeptidase N from Escherichia coli
分子名称: Aminopeptidase N, SULFATE ION, ZINC ION
著者Nakajima, Y, Onohara, Y, Ito, K, Yoshimoto, T.
登録日2006-05-22
公開日2006-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
2D5L
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BU of 2d5l by Molmil
Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
分子名称: SULFATE ION, dipeptidyl aminopeptidase IV, putative
著者Nakajima, Y, Ito, K, Xu, Y, Yamada, N, Onohara, Y, Yoshimoto, T.
登録日2005-11-02
公開日2006-09-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DQM
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BU of 2dqm by Molmil
Crystal Structure of Aminopeptidase N complexed with bestatin
分子名称: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase N, SULFATE ION, ...
著者Onohara, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2006-05-29
公開日2006-08-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
4BEH
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BU of 4beh by Molmil
Solution structure of human ribosomal protein P1.P2 heterodimer
分子名称: 60S ACIDIC RIBOSOMAL PROTEIN P1, 60S ACIDIC RIBOSOMAL PROTEIN P2
著者Lee, K.M, Yusa, K, Chu, L.O, Wing-Heng Yu, C, Shaw, P.C, Oono, M, Miyoshi, T, Ito, K, Wong, K.B, Uchiumi, T.
登録日2013-03-10
公開日2013-08-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution Structure of Human P1P2 Heterodimer Provides Insights Into the Role of Eukaryotic Stalk in Recruiting the Ribosome-Inactivating Protein Trichosanthin to the Ribosome.
Nucleic Acids Res., 41, 2013
2DDK
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BU of 2ddk by Molmil
Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (orthorhombic form)
分子名称: Inositol monophosphatase 2
著者Arai, R, Ito, K, Kamo-Uchikubo, T, Bessho, Y, Ohba, H, Ohnishi, T, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-01-30
公開日2007-02-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
3WN6
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BU of 3wn6 by Molmil
Crystal structure of alpha-amylase AmyI-1 from Oryza sativa
分子名称: Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T.
登録日2013-12-05
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
2EEP
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BU of 2eep by Molmil
Prolyl Tripeptidyl Aminopeptidase Complexed with an Inhibitor
分子名称: Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
著者Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-02-16
公開日2008-02-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2ECF
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BU of 2ecf by Molmil
Crystal Structure of Dipeptidyl Aminopeptidase IV from Stenotrophomonas maltophilia
分子名称: Dipeptidyl peptidase IV
著者Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-02-13
公開日2008-02-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue
J.Bacteriol., 190, 2008
2CZK
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Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (trigonal form)
分子名称: Inositol monophosphatase 2
著者Arai, R, Ito, K, Hanawa-Suetsugu, K, Ohnishi, T, Ohba, H, Yoshikawa, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-13
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007

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