1X1N
| Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato | Descriptor: | 4-alpha-glucanotransferase, CALCIUM ION, GLYCEROL | Authors: | Imamura, K, Matsuura, T, Takaha, T, Fujii, K, Nakagawa, A, Kusunoki, M, Nitta, Y. | Deposit date: | 2005-04-08 | Release date: | 2006-04-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato to be published
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3VK7
| Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*G)-3'), FORMIC ACID, ... | Authors: | Imamura, K, Averill, A, Wallace, S.S, Doublie, S. | Deposit date: | 2011-11-10 | Release date: | 2011-12-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural characterization of viral ortholog of human DNA glycosylase NEIL1 bound to thymine glycol or 5-hydroxyuracil-containing DNA J.Biol.Chem., 287, 2012
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3VK8
| Crystal structure of DNA-glycosylase bound to DNA containing Thymine glycol | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*AP*(CTG)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'), GLYCEROL, ... | Authors: | Imamura, K, Averill, A, Wallace, S.S, Doublie, S. | Deposit date: | 2011-11-10 | Release date: | 2011-12-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural characterization of viral ortholog of human DNA glycosylase NEIL1 bound to thymine glycol or 5-hydroxyuracil-containing DNA J.Biol.Chem., 287, 2012
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3A42
| Crystal structure of MvNei1 | Descriptor: | Formamidopyrimidine-DNA glycosylase, GLYCEROL, SULFATE ION | Authors: | Imamura, K, Wallace, S, Doublie, S. | Deposit date: | 2009-06-30 | Release date: | 2009-07-21 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
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3A46
| Crystal structure of MvNei1/THF complex | Descriptor: | DNA, Formamidopyrimidine-DNA glycosylase, GLYCEROL | Authors: | Imamura, K, Wallace, S, Doublie, S. | Deposit date: | 2009-07-01 | Release date: | 2009-07-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
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3A45
| Crystal structure of MvNei1_2 | Descriptor: | Formamidopyrimidine-DNA glycosylase, POTASSIUM ION | Authors: | Imamura, K, Wallace, S, Doublie, S. | Deposit date: | 2009-06-30 | Release date: | 2009-07-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA J.Biol.Chem., 284, 2009
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6LU2
| Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans | Descriptor: | Substrate binding protein | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2020-04-22 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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6LU3
| Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans complexed with 4-hydroxybenzoate hydrazide | Descriptor: | 4-oxidanylbenzohydrazide, Substrate binding protein | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2020-04-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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6LU4
| Crystal structure of the substrate binding protein from Microbacterium hydrocarbonoxydans complexed with propylparaben | Descriptor: | Substrate binding protein, propyl 4-hydroxybenzoate | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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8W8M
| Cryo-EM structure of helical filament of MyD88 TIR | Descriptor: | Myeloid differentiation primary response protein MyD88 | Authors: | Kasai, K, Imamura, K, Narita, A, Makino, F, Miyata, T, Kato, T, Namba, K, Onishi, H, Tochio, H. | Deposit date: | 2023-09-04 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (3.28 Å) | Cite: | Signaling adopter protein in a self-assembled form To Be Published
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7VI4
| Electron crystallographic structure of TIA-1 prion-like domain, A381T mutant | Descriptor: | TIA-1 prion-like domain | Authors: | Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K. | Deposit date: | 2021-09-24 | Release date: | 2022-09-28 | Last modified: | 2024-06-19 | Method: | ELECTRON CRYSTALLOGRAPHY (0.95 Å) | Cite: | ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures. Proc.Natl.Acad.Sci.USA, 119, 2022
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7VI5
| Electron crystallographic structure of TIA-1 prion-like domain, wild type sequence | Descriptor: | TIA-1 prion-like domain | Authors: | Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K. | Deposit date: | 2021-09-24 | Release date: | 2022-09-28 | Last modified: | 2023-11-29 | Method: | ELECTRON CRYSTALLOGRAPHY (1.761 Å) | Cite: | ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures. Proc.Natl.Acad.Sci.USA, 119, 2022
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6LX2
| Potato D-enzyme complexed with CA26 | Descriptor: | 4-alpha-glucanotransferase, chloroplastic/amyloplastic, 4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose-(1-4)-4-deoxy-alpha-D-glucopyranose, ... | Authors: | Unno, H, Imamura, K. | Deposit date: | 2020-02-10 | Release date: | 2020-08-26 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci., 29, 2020
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6LX1
| Potato D-enzyme complexed with Acarbose | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-1,5-anhydro-D-glucitol, 4-alpha-glucanotransferase, chloroplastic/amyloplastic, ... | Authors: | Unno, H, Imamura, K. | Deposit date: | 2020-02-10 | Release date: | 2020-08-26 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci., 29, 2020
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3W0F
| Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3) | Descriptor: | Endonuclease 8-like 3, IODIDE ION, ZINC ION | Authors: | Liu, M, Imamura, K, Averill, A.M, Wallace, S.S, Doublie, S. | Deposit date: | 2012-10-30 | Release date: | 2013-01-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural Characterization of a Mouse Ortholog of Human NEIL3 with a Marked Preference for Single-Stranded DNA Structure, 21, 2013
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7COV
| Potato D-enzyme, native (substrate free) | Descriptor: | 4-alpha-glucanotransferase, chloroplastic/amyloplastic, CALCIUM ION, ... | Authors: | Unno, H, Imamura, K. | Deposit date: | 2020-08-05 | Release date: | 2020-08-26 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci., 29, 2020
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