Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 829 results

1V8Y
DownloadVisualize
BU of 1v8y by Molmil
Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Zn
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, ZINC ION
Authors:Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-15
Release date:2004-10-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
6KMF
DownloadVisualize
BU of 6kmf by Molmil
FimA type V pilus from P.gingivalis
Descriptor: Major fimbrium subunit FimA type-1
Authors:Shibata, S, Shoji, M, Matsunami, H, Matthews, M, Imada, K, Nakayama, K, Wolf, M.
Deposit date:2019-07-31
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
1VDP
DownloadVisualize
BU of 1vdp by Molmil
The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
Descriptor: Lysozyme C
Authors:Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
to be published
1VED
DownloadVisualize
BU of 1ved by Molmil
The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space
Descriptor: Lysozyme C
Authors:Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
Deposit date:2004-03-30
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space
To be Published
1VDS
DownloadVisualize
BU of 1vds by Molmil
The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space
Descriptor: Lysozyme C
Authors:Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space
to be published
1VDQ
DownloadVisualize
BU of 1vdq by Molmil
The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
Descriptor: Lysozyme C
Authors:Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
to be published
1VDT
DownloadVisualize
BU of 1vdt by Molmil
The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
Descriptor: Lysozyme C
Authors:Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
Deposit date:2004-03-24
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
to be published
1A7V
DownloadVisualize
BU of 1a7v by Molmil
CYTOCHROME C' FROM RHODOPSEUDOMONAS PALUSTRIS
Descriptor: CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE
Authors:Shibata, N, Iba, S, Misaki, S, Meyer, T.E, Bartsch, R.G, Cusanovich, M.A, Higuchi, Y, Yasuoka, N.
Deposit date:1998-03-18
Release date:1998-06-17
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure.
J.Mol.Biol., 284, 1998
7NVR
DownloadVisualize
BU of 7nvr by Molmil
Human Mediator with RNA Polymerase II Pre-initiation complex
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Rengachari, S, Schilbach, S, Aibara, S, Cramer, P.
Deposit date:2021-03-15
Release date:2021-05-05
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures of mammalian RNA polymerase II pre-initiation complexes.
Nature, 594, 2021
7O4J
DownloadVisualize
BU of 7o4j by Molmil
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-06
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O4I
DownloadVisualize
BU of 7o4i by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-06
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O75
DownloadVisualize
BU of 7o75 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-13
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O4L
DownloadVisualize
BU of 7o4l by Molmil
Yeast TFIIH in the expanded state within the pre-initiation complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-06
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O72
DownloadVisualize
BU of 7o72 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O73
DownloadVisualize
BU of 7o73 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O4K
DownloadVisualize
BU of 7o4k by Molmil
Yeast TFIIH in the contracted state within the pre-initiation complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
Deposit date:2021-04-06
Release date:2021-06-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7B0Y
DownloadVisualize
BU of 7b0y by Molmil
Structure of a transcribing RNA polymerase II-U1 snRNP complex
Descriptor: 145-nt RNA, DNA-directed RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, ...
Authors:Zhang, S, Aibara, S, Vos, S.M, Agafonov, D.E, Luehrmann, R, Cramer, P.
Deposit date:2020-11-23
Release date:2021-01-13
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of a transcribing RNA polymerase II-U1 snRNP complex.
Science, 371, 2021
7AOI
DownloadVisualize
BU of 7aoi by Molmil
Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate
Descriptor: 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L17, ...
Authors:Tobiasson, V, Gahura, O, Aibara, S, Baradaran, R, Zikova, A, Amunts, A.
Deposit date:2020-10-14
Release date:2020-12-02
Last modified:2021-03-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit.
Embo J., 40, 2021
7B7U
DownloadVisualize
BU of 7b7u by Molmil
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Fianu, I, Dienemann, C, Aibara, S, Schilbach, S, Cramer, P.
Deposit date:2020-12-11
Release date:2021-05-19
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2.
Commun Biol, 4, 2021
2ROZ
DownloadVisualize
BU of 2roz by Molmil
Structure of the C-terminal PID Domain of Fe65L1 Complexed with the Cytoplasmic Tail of APP Reveals a Novel Peptide Binding Mode
Descriptor: Amyloid beta A4 precursor protein-binding family B member 2, peptide from Amyloid beta A4 protein
Authors:Li, H, Koshiba, S, Tochio, N, Watanabe, S, Harada, T, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-25
Release date:2008-07-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode
J.Biol.Chem., 283, 2008
2RR6
DownloadVisualize
BU of 2rr6 by Molmil
Solution structure of the leucine rich repeat of human acidic leucine-rich nuclear phosphoprotein 32 family member B
Descriptor: Acidic leucine-rich nuclear phosphoprotein 32 family member B
Authors:Tochio, N, Umehara, T, Tsuda, K, Koshiba, S, Harada, T, Watanabe, S, Tanaka, A, Kigawa, T, Yokoyama, S.
Deposit date:2010-05-25
Release date:2010-06-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain.
J.Mol.Biol., 401, 2010
2RQR
DownloadVisualize
BU of 2rqr by Molmil
The solution structure of human DOCK2 SH3 domain - ELMO1 peptide chimera complex
Descriptor: Engulfment and cell motility protein 1,Dedicator of cytokinesis protein 2
Authors:Yokoyama, S, Tochio, N, Koshiba, S, Kigawa, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-21
Release date:2010-10-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
2RMX
DownloadVisualize
BU of 2rmx by Molmil
Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A
Descriptor: NKG2-A/NKG2-B type II integral membrane protein, Tyrosine-protein phosphatase non-receptor type 6
Authors:Kasai, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-30
Release date:2008-12-02
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural basis for the recognition of the two NKG2A immunoreceptor tyrosine-based inhibitory motifs (ITIMs) by the C-terminal SH2 domain of protein tyrosine phosphatase SHP-1
To be Published
2RSM
DownloadVisualize
BU of 2rsm by Molmil
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65 (ICT2)
Descriptor: Probable peptide chain release factor C12orf65 homolog, mitochondrial
Authors:Enomoto, M, Tochio, N, Tomizawa, T, Koshiba, S, Guntert, P, Kigawa, T, Yokoyama, S, Nameki, N.
Deposit date:2012-03-28
Release date:2012-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65.
Proteins, 2012
2ROR
DownloadVisualize
BU of 2ror by Molmil
Solution structure of the VAV1 SH2 domain complexed with a tyrosine-phosphorylated peptide from SLP76
Descriptor: 15-meric peptide from Lymphocyte cytosolic protein 2, Proto-oncogene vav
Authors:Tanaka, M, Kasai, T, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-08
Release date:2009-04-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the VAV1 SH2 domain complexed with a tyrosine-phosphorylated peptide from SLP76
To be Published

225399

數據於2024-09-25公開中

PDB statisticsPDBj update infoContact PDBjnumon