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PDB: 17892 results

7TRP
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Human M4 muscarinic acetylcholine receptor complex with Gi1 and the agonist iperoxo and positive allosteric modulator LY2033298
Descriptor: 3-amino-5-chloro-N-cyclopropyl-6-methoxy-4-methylthieno[2,3-b]pyridine-2-carboxamide, 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, Antibody fragment scFv16, ...
Authors:Vuckovic, Z, Mobbs, J.I, Belousoff, M.J, Glukhova, A, Sexton, P.M, Danev, R, Thal, D.M.
Deposit date:2022-01-30
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural and dynamic mechanisms of allostery at the M4 muscarinic acetylcholine receptor
Elife, 2023
7TRK
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Human M4 muscarinic acetylcholine receptor complex with Gi1 and the agonist iperoxo
Descriptor: 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, Antibody fragment scFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Vuckovic, Z, Mobbs, J.I, Belousoff, M.J, Glukhova, A, Sexton, P.M, Danev, R, Thal, D.M.
Deposit date:2022-01-29
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural and dynamic mechanisms of allostery at the M4 muscarinic acetylcholine receptor
Elife, 2023
7TRQ
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Human M4 muscarinic acetylcholine receptor complex with Gi1 and the agonist iperoxo and positive allosteric modulator VU0467154
Descriptor: 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, 5-amino-3,4-dimethyl-N-{[4-(trifluoromethanesulfonyl)phenyl]methyl}thieno[2,3-c]pyridazine-6-carboxamide, Antibody fragment scFv16, ...
Authors:Vuckovic, Z, Mobbs, J.I, Belousoff, M.J, Glukhova, A, Sexton, P.M, Danev, R, Thal, D.M.
Deposit date:2022-01-30
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural and dynamic mechanisms of allostery at the M4 muscarinic acetylcholine receptor
Elife, 2023
7TRS
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BU of 7trs by Molmil
Human M4 muscarinic acetylcholine receptor complex with Gi1 and the endogenous agonist acetylcholine
Descriptor: ACETYLCHOLINE, Antibody fragment scFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Vuckovic, Z, Mobbs, J.I, Belousoff, M.J, Glukhova, A, Sexton, P.M, Danev, R, Thal, D.M.
Deposit date:2022-01-30
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural and dynamic mechanisms of allostery at the M4 muscarinic acetylcholine receptor
Elife, 2023
2MG9
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Truncated EGF-A
Descriptor: CALCIUM ION, Low-density lipoprotein receptor
Authors:Schroeder, C.I, Rosengren, K.
Deposit date:2013-10-30
Release date:2014-04-02
Method:SOLUTION NMR
Cite:Design and Synthesis of Truncated EGF-A Peptides that Restore LDL-R Recycling in the Presence of PCSK9 In Vitro.
Chem.Biol., 21, 2014
1DTQ
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BU of 1dtq by Molmil
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-1 (PETT131A94)
Descriptor: HIV-1 RT A-CHAIN, HIV-1 RT B-CHAIN, N-[[3-FLUORO-4-ETHOXY-PYRID-2-YL]ETHYL]-N'-[5-NITRILOMETHYL-PYRIDYL]-THIOUREA
Authors:Ren, J, Diprose, J, Warren, J, Esnouf, R.M, Bird, L.E, Ikemizu, S, Slater, M, Milton, J, Balzarini, J, Stuart, D.I, Stammers, D.K.
Deposit date:2000-01-13
Release date:2000-03-20
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Phenylethylthiazolylthiourea (PETT) non-nucleoside inhibitors of HIV-1 and HIV-2 reverse transcriptases. Structural and biochemical analyses.
J.Biol.Chem., 275, 2000
8AYL
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Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand JNJ-61432059
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 5-[2-(4-fluorophenyl)-7-(4-oxidanylpiperidin-1-yl)pyrazolo[1,5-c]pyrimidin-3-yl]-1,3-dihydroindol-2-one, ...
Authors:Zhang, D, Lape, R, Shaikh, S, Kohegyi, B, Watson, J.F, Cais, O, Nakagawa, T, Greger, I.
Deposit date:2022-09-02
Release date:2023-04-19
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Modulatory mechanisms of TARP gamma 8-selective AMPA receptor therapeutics.
Nat Commun, 14, 2023
1N9U
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Differences and Similarities in Solution Structures of Angiotensin I & II: Implication for Structure-Function Relationship
Descriptor: Angiotensin I
Authors:Spyroulias, G.A, Nikolakopoulou, P, Tzakos, A, Gerothanassis, I.P, Magafa, V, Manessi-Zoupa, E, Cordopatis, P.
Deposit date:2002-11-26
Release date:2003-07-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Comparison of the solution structures of angiotensin I & II. Implication for structure-function relationship.
Eur.J.Biochem., 270, 2003
4Y5Y
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Diabody 330 complex with EpoR
Descriptor: Erythropoietin receptor, GLYCEROL, diabody 330 VH domain, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
2JB6
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Fab fragment in complex with small molecule hapten, crystal form-2
Descriptor: 2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM, FAB FRAGMENT MOR03268 HEAVY CHAIN, FAB FRAGMENT MOR03268 LIGHT CHAIN
Authors:Hillig, R.C, Baesler, S, Malawski, G, Badock, V, Bahr, I, Schirner, M, Licha, K.
Deposit date:2006-12-03
Release date:2008-01-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Fab Mor03268 Triggers Absorption Shift of a Diagnostic Dye Via Packaging in a Solvent-Shielded Fab Dimer Interface
J.Mol.Biol., 377, 2008
7MHA
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BU of 7mha by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Boxer, S.G, Mathews, I.I, Weaver, J.B.
Deposit date:2021-04-14
Release date:2022-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Photosynthetic reaction center variants made via genetic code expansion indicate tyrosine at M210 tunes the mechanism for primary electron transfer
Thesis Ph.D. Stanford University, 2022
1YN6
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BU of 1yn6 by Molmil
Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a peptide from the influenza A acid polymerase
Descriptor: 10-mer peptide from RNA-directed RNA polymerase subunit P2, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Turner, S.J, Kedzierska, K, Komodromou, H, La Gruta, N.L, Dunstone, M.A, Webb, A.I, Webby, R, Walden, H, Xie, W, McCluskey, J, Purcell, A.W, Rossjohn, J, Doherty, P.C.
Deposit date:2005-01-23
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8+ T cell populations
Nat.Immunol., 6, 2005
4Y5X
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BU of 4y5x by Molmil
Diabody 305 complex with EpoR
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, Erythropoietin receptor, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-03-18
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
1RJZ
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BU of 1rjz by Molmil
Mhc Class I Natural Mutant H-2Kbm8 Heavy Chain Complexed With beta-2 Microglobulin and Herpies Simplex Virus Mutant Glycoprotein B Peptide
Descriptor: Beta-2-microglobulin, Glycoprotein B, H-2 class I histocompatibility antigen, ...
Authors:Miley, M.J, Messaoudi, I, Nikolich-Zugich, J, Fremont, D.H.
Deposit date:2003-11-20
Release date:2004-12-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for the Restoration of TCR Recognition of an MHC Allelic Variant by Peptide Secondary Anchor Substitution
J.Exp.Med., 200, 2004
8AKQ
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BU of 8akq by Molmil
180 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKS
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BU of 8aks by Molmil
215 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKR
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BU of 8akr by Molmil
200 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKT
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BU of 8akt by Molmil
235 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
6EYU
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BU of 6eyu by Molmil
Crystal structure of the inward H(+) pump xenorhodopsin
Descriptor: Bacteriorhodopsin, EICOSANE, RETINAL, ...
Authors:Kovalev, K, Shevchenko, V, Polovinkin, V, Mager, T, Gushchin, I, Melnikov, I, Borshchevskiy, V, Popov, A, Alekseev, A, Gordeliy, V.
Deposit date:2017-11-13
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Inward H(+) pump xenorhodopsin: Mechanism and alternative optogenetic approach.
Sci Adv, 3, 2017
2J6K
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BU of 2j6k by Molmil
N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG)
Descriptor: CD2-ASSOCIATED PROTEIN, SODIUM ION
Authors:Moncalian, G, Cardenes, N, Deribe, Y.L, Spinola-Amilibia, M, Dikic, I, Bravo, J.
Deposit date:2006-09-29
Release date:2006-10-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Atypical Polyproline Recognition by the Cms N- Terminal SH3 Domain.
J.Biol.Chem., 281, 2006
7UIT
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BU of 7uit by Molmil
Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
Descriptor: Peptide 2
Authors:Wang, F, Grosvirt-Dramen, A, Hochbaum, A.I, Egelman, E.H.
Deposit date:2022-03-29
Release date:2023-04-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
To Be Published
7RRH
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BU of 7rrh by Molmil
Crystal structure of fast switching R66M/M159T mutant of fluorescent protein Dronpa (Dronpa2)
Descriptor: Fluorescent protein Dronpa
Authors:Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:2021-08-09
Release date:2021-10-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRK
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Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2)
Descriptor: Fluorescent protein Dronpa
Authors:Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:2021-08-09
Release date:2021-10-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.929 Å)
Cite:Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
3FOL
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BU of 3fol by Molmil
Crystal structure of the Class I MHC Molecule H-2Kwm7 with a Single Self Peptide VNDIFERI
Descriptor: 8 residue synthetic peptide, Beta-2-microglobulin, MHC
Authors:Brims, D.R, Qian, J, Jarchum, I, Yamada, T, Mikesh, L, Palmieri, E, Lund, T, Hattori, M, Shabanowitz, J, Hunt, D.F, Ramagopal, U.A, Malashkevich, V.N, Almo, S.C, Nathenson, S.G, DiLorenzo, T.P.
Deposit date:2008-12-30
Release date:2010-01-12
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Predominant occupation of the class I MHC molecule H-2Kwm7 with a single self-peptide suggests a mechanism for its diabetes-protective effect
Int.Immunol., 22, 2010
1ICN
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BU of 1icn by Molmil
ESCHERICHIA COLI-DERIVED RAT INTESTINAL FATTY ACID BINDING PROTEIN WITH BOUND MYRISTATE AT 1.5 A RESOLUTION AND I-FABPARG106-->GLN WITH BOUND OLEATE AT 1.74 A RESOLUTION
Descriptor: INTESTINAL FATTY ACID BINDING PROTEIN, OLEIC ACID
Authors:Eads, J.C, Sacchettini, J.C, Kromminga, A, Gordon, J.I.
Deposit date:1993-09-20
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Escherichia coli-derived rat intestinal fatty acid binding protein with bound myristate at 1.5 A resolution and I-FABPArg106-->Gln with bound oleate at 1.74 A resolution.
J.Biol.Chem., 268, 1993

224931

數據於2024-09-11公開中

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