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PDB: 17965 results

2ZCR
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Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with bisphosphonate BPH-698
Descriptor: Dehydrosqualene synthase, MAGNESIUM ION, tripotassium (1R)-4-(4'-butylbiphenyl-4-yl)-1-phosphonatobutane-1-sulfonate
Authors:Liu, C.I, Jeng, W.Y, Wang, A.H, Oldfield, E.
Deposit date:2007-11-11
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence.
Science, 319, 2008
2ZCX
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Crystal structure of TetR family transcriptional regulator SCO7815
Descriptor: TetR-family transcriptional regulator
Authors:Okada, U, Kondo, K, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2007-11-13
Release date:2008-11-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural and functional analysis of TetR family transcriptional regulator SCO7815
To be Published
3EQ8
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Prolyl oligopeptidase complexed with R-Pro-(decarboxy-Pro)-Type inhibitors
Descriptor: 1-{3-oxo-3-[(2S)-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]propyl}-3-phenylquinoxalin-2(1H)-one, Prolyl endopeptidase
Authors:Kanai, K, Aranyi, P, Bocskei, Z, Ferenczy, G, Harmat, V, Simon, K, Naray-Szabo, G, Hermecz, I.
Deposit date:2008-09-30
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Prolyl oligopeptidase inhibition by N-acyl-pro-pyrrolidine-type molecules
J.Med.Chem., 51, 2008
2ZHJ
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Crystal Structure Analysis of the Sodium-Bound Annexin A4 at 1.34 A resolution
Descriptor: Annexin A4, SODIUM ION
Authors:Butsushita, K, Ida, K, Fukuoka, S.-I, Arii, Y.
Deposit date:2008-02-06
Release date:2009-02-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Analysis for the Soduim-Dependent Dissociation of Annexin A4: Crystal Structures of Soduim-Bound Annexin A4 at High Resolutions
To be Published
2ZI8
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Crystal structure of the HsaC extradiol dioxygenase from M. tuberculosis in complex with 3,4-dihydroxy-9,10-seconandrost-1,3,5(10)-triene-9,17-dione (DHSA)
Descriptor: 3,4-dihydroxy-9,10-secoandrosta-1(10),2,4-triene-9,17-dione, FE (II) ION, PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC
Authors:D'Angelo, I, Yam, K.C, Eltis, L.D, Strynadka, N.
Deposit date:2008-02-13
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Studies of a ring-cleaving dioxygenase illuminate the role of cholesterol metabolism in the pathogenesis of Mycobacterium tuberculosis.
Plos Pathog., 5, 2009
3QR6
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Crystal Structure Analysis of H185F Mutant of Human CLIC1
Descriptor: Chloride intracellular channel protein 1
Authors:Fanucchi, S, Achilonu, I.A, Fernandes, M.A, Dirr, H.W.
Deposit date:2011-02-17
Release date:2011-03-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Role of individual histidines in the pH-dependent global stability of human chloride intracellular channel 1.
Biochemistry, 51, 2012
3EC8
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The crystal structure of the RA domain of FLJ10324 (RADIL)
Descriptor: CHLORIDE ION, GLYCEROL, LEAD (II) ION, ...
Authors:Wisniewska, M, Lehtio, L, Andersson, J, Arrowsmith, C.H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Karlberg, T, Kotenyova, T, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Olesen, K, Persson, C, Sagemark, J, Schueler, H, Thorsell, A.G, Tresaugues, L, van den Berg, S, Weigelt, J, Welin, M, Wikstrom, M, Berglund, H, Structural Genomics Consortium (SGC)
Deposit date:2008-08-29
Release date:2008-09-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of the RA domain of FLJ10324 (RADIL)
to be published
2ZPA
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Crystal Structure of tRNA(Met) Cytidine Acetyltransferase
Descriptor: ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ...
Authors:Chimnaronk, S, Manita, T, Yao, M, Tanaka, I.
Deposit date:2008-07-08
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon
Embo J., 28, 2009
3EIE
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Crystal Structure of S.cerevisiae Vps4 in the SO4-bound state
Descriptor: SULFATE ION, Vacuolar protein sorting-associated protein 4
Authors:Gonciarz, M.D, Whitby, F.G, Eckert, D.M, Kieffer, C, Heroux, A, Sundquist, W.I, Hill, C.P.
Deposit date:2008-09-15
Release date:2008-09-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Biochemical and structural studies of yeast vps4 oligomerization.
J.Mol.Biol., 384, 2008
2ZHI
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Crystal Structure Analysis of the Sodium-Bound Annexin A4 at 1.58 A resolution
Descriptor: Annexin A4, SODIUM ION, SULFATE ION
Authors:Butsushita, K, Ida, K, Fukuoka, S.-I, Arii, Y.
Deposit date:2008-02-06
Release date:2009-02-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural Analysis for the Sodium-Dependent Dissociation of Annexin A4: Crystal Structures of Soduim-Bound Annexin A4 at High Resolutions
To be Published
3EOZ
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Crystal Structure of Phosphoglycerate Mutase from Plasmodium Falciparum, PFD0660w
Descriptor: GLYCEROL, PHOSPHATE ION, putative Phosphoglycerate mutase
Authors:Wernimont, A.K, Tempel, W, Lam, A, Zhao, Y, Lew, J, Lin, Y.H, Wasney, G, Vedadi, M, Kozieradzki, I, Cossar, D, Schapira, M, Weigelt, J, Arrowsmith, C.H, Bochkarev, A, Edwards, A.M, Hui, R, Pizarro, J, Hills, T, Structural Genomics Consortium (SGC)
Deposit date:2008-09-29
Release date:2008-11-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Characterization of a new phosphatase from Plasmodium.
Mol.Biochem.Parasitol., 179, 2011
3F2U
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Crystal structure of human chromobox homolog 1 (CBX1)
Descriptor: Chromobox protein homolog 1
Authors:Amaya, M.F, Ravichandran, M, Tempel, W, Wernimont, A.K, Loppnau, P, Kozieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Bountra, C, Botchkarev, A, Min, J, Ouyang, H, Structural Genomics Consortium (SGC)
Deposit date:2008-10-30
Release date:2008-11-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the complex of human chromobox homolog 1 (CBX1)
To be Published
3F6L
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BU of 3f6l by Molmil
Structure of the F4 fimbrial chaperone FaeE
Descriptor: Chaperone protein faeE
Authors:Van Molle, I, Moonens, K, Buts, L, Garcia-Pino, A, Wyns, L, De Greve, H, Bouckaert, J.
Deposit date:2008-11-06
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:The F4 fimbrial chaperone FaeE is stable as a monomer that does not require self-capping of its pilin-interactive surfaces
Acta Crystallogr.,Sect.D, 65, 2009
3A5R
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Benzalacetone synthase from Rheum palmatum complexed with 4-coumaroyl-primed monoketide intermediate
Descriptor: 4'-HYDROXYCINNAMIC ACID, Benzalacetone synthase
Authors:Morita, H, Kato, R, Abe, I, Sugio, S, Kohno, T.
Deposit date:2009-08-10
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A structure-based mechanism for benzalacetone synthase from Rheum palmatum
Proc.Natl.Acad.Sci.USA, 107, 2010
2ZZF
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Crystal structure of alanyl-tRNA synthetase without oligomerization domain
Descriptor: Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
3EZR
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BU of 3ezr by Molmil
CDK-2 with indazole inhibitor 17 bound at its active site
Descriptor: 3-methoxy-4-{3-[4-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline, Cell division protein kinase 2
Authors:Kiefer, J.R, Day, J.E, Caspers, N.L, Mathis, K.J, Kretzmer, K.K, Weinberg, R.A, Reitz, B.A, Stegeman, R.A, Trujillo, J.I, Huang, W, Thorarensen, A, Xing, L, Wrightstone, A, Christine, L, Compton, R, Li, X.
Deposit date:2008-10-23
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: Design and synthesis of a potent and isoform selective PKC-zeta inhibitor
Bioorg.Med.Chem.Lett., 19, 2009
360D
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BU of 360d by Molmil
STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, N,N'-(furan-2,5-diylbis{benzene-4,1-diyl[(Z)-aminomethylylidene]})diethanaminium
Authors:Guerri, A, Simpson, I.J, Neidle, S.
Deposit date:1997-10-29
Release date:1998-07-16
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Visualisation of extensive water ribbons and networks in a DNA minor-groove drug complex.
Nucleic Acids Res., 26, 1998
3A1R
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Neutron crystal structure analysis of bovine pancreatic ribonuclease A
Descriptor: Ribonuclease pancreatic
Authors:Yagi, D, Tanaka, I, Niimura, N.
Deposit date:2009-04-21
Release date:2009-09-01
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (1.7 Å)
Cite:A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution
Acta Crystallogr.,Sect.D, 65, 2009
3A3F
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Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae,complexed with novel beta-lactam (FMZ)
Descriptor: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-({(2R)-2-[(2-oxoimidazolidin-1-yl)amino]-2-phenylacetyl}amino)ethyl]-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A5Q
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Benzalacetone synthase from Rheum palmatum
Descriptor: Benzalacetone synthase
Authors:Morita, H, Kato, R, Abe, I, Sugio, S, Kohno, T.
Deposit date:2009-08-10
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structure-based mechanism for benzalacetone synthase from Rheum palmatum
Proc.Natl.Acad.Sci.USA, 107, 2010
3A67
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Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-24
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A3I
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Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with ampicillin (AIX)
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A6C
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BU of 3a6c by Molmil
Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A7W
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Crystal Structure of Trypsin complexed with (E)-4-((tetrahydro-2H-pyran-2-yloxyimino)methyl)benzimidamide (soaking 4hours)
Descriptor: (E)-4-((tetrahydro-2H-pyran-2-yloxyimino)methyl)benzimidamide, CALCIUM ION, Cationic trypsin, ...
Authors:Yamane, J, Yao, M, Tanaka, I.
Deposit date:2009-10-05
Release date:2010-09-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:In-Crystal Chemical Ligation for Drug Discovery
To be Published
3A88
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Crystal Structure of Trypsin complexed with (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide (soaking 30 minutes)
Descriptor: (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide, CALCIUM ION, Cationic trypsin, ...
Authors:Yamane, J, Yao, M, Tanaka, I.
Deposit date:2009-10-05
Release date:2010-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:In-Crystal Chemical Ligation for Drug Discovery
To be Published

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