Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17892 results

2F95
DownloadVisualize
BU of 2f95 by Molmil
M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Descriptor: RETINAL, Sensory rhodopsin II, Sensory rhodopsin II transducer, ...
Authors:Moukhametzianov, R.I, Klare, J.P, Efremov, R.G, Baecken, C, Goeppner, A, Labahn, J, Engelhard, M, Bueldt, G, Gordeliy, V.I.
Deposit date:2005-12-05
Release date:2006-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.
Nature, 440, 2006
3R5L
DownloadVisualize
BU of 3r5l by Molmil
Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Deazaflavin-dependent nitroreductase
Authors:Cellitti, S.E, Shaffer, J, Jones, D.H, Mukherjee, T, Gurumurthy, M, Bursulaya, B, Boshoff, H.I.M, Choi, I, Nayyar, A, Lee, Y.S, Cherian, J, Niyomrattanakit, P, Dick, T, Manjunatha, U.H, Barry, C.E, Spraggon, G, Geierstanger, B.H.
Deposit date:2011-03-18
Release date:2012-01-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
Structure, 20, 2012
8S0N
DownloadVisualize
BU of 8s0n by Molmil
Crystal structure of the TMPRSS2 zymogen in complex with the nanobody A07
Descriptor: Transmembrane protease serine 2, nanobody A07
Authors:Duquerroy, S, Fernandez, I, Rey, F.
Deposit date:2024-02-14
Release date:2024-06-26
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of TMPRSS2 zymogen activation and recognition by the HKU1 seasonal coronavirus.
Cell, 187, 2024
135D
DownloadVisualize
BU of 135d by Molmil
SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor: DNA TRIPLEX
Authors:Radhakrishnan, I, Patel, D.J.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
8SFN
DownloadVisualize
BU of 8sfn by Molmil
WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (30-MER), DNA (31-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
To Be Published
3RO7
DownloadVisualize
BU of 3ro7 by Molmil
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymine.
Descriptor: Apolipoprotein A-I-binding protein, SULFATE ION, THYMINE
Authors:Shumilin, I.A, Jha, K.N, Cymborowski, M, Herr, J.C, Minor, W.
Deposit date:2011-04-25
Release date:2012-07-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
8SFI
DownloadVisualize
BU of 8sfi by Molmil
WT CRISPR-Cas12a with a 8bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a with a 8bp R-loop
To Be Published
5HCQ
DownloadVisualize
BU of 5hcq by Molmil
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A.
Deposit date:2016-01-04
Release date:2016-04-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res., 44, 2016
4MHI
DownloadVisualize
BU of 4mhi by Molmil
Crystal structure of a H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2013-08-29
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.595 Å)
Cite:A Unique and Conserved Neutralization Epitope in H5N1 Influenza Viruses Identified by an Antibody against the A/Goose/Guangdong/1/96 Hemagglutinin.
J.Virol., 87, 2013
4KAS
DownloadVisualize
BU of 4kas by Molmil
Crystal structure of FDTS from T. maritima mutant (H53D) with FAD and dUMP
Descriptor: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Mathews, I.I.
Deposit date:2013-04-22
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Flavin-Dependent Thymidylate Synthase as a Drug Target for Deadly Microbes: Mutational Study and a Strategy for Inhibitor Design.
J Bioterror Biodef, Suppl 12, 2013
8SFQ
DownloadVisualize
BU of 8sfq by Molmil
WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
To Be Published
8SFO
DownloadVisualize
BU of 8sfo by Molmil
WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (35-MER), DNA (40-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
To Be Published
1AMQ
DownloadVisualize
BU of 1amq by Molmil
X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ASPARTATE AMINOTRANSFERASE
Authors:Miyahara, I, Hirotsu, K, Hayashi, H, Kagamiyama, H.
Deposit date:1994-07-01
Release date:1994-09-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of pyridoxamine 5'-phosphate-type aspartate aminotransferases from Escherichia coli in three forms.
J.Biochem.(Tokyo), 116, 1994
3GG6
DownloadVisualize
BU of 3gg6 by Molmil
Crystal structure of the NUDIX domain of human NUDT18
Descriptor: Nucleoside diphosphate-linked moiety X motif 18
Authors:Tresaugues, L, Siponen, M.I, Lehtio, L, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Karlberg, T, Kotenyova, T, Moche, M, Nilsson, M.E, Nyman, T, Persson, C, Sagemark, J, Schueler, H, Thorsell, A.G, Van Den Berg, S, Weigelt, J, Welin, M, Wisniewska, M, Nordlund, P, Structural Genomics Consortium (SGC)
Deposit date:2009-02-27
Release date:2009-03-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the NUDIX domain of human NUDT18
To be Published
1AO2
DownloadVisualize
BU of 1ao2 by Molmil
cobalt(III)-deglycopepleomycin determined by NMR studies
Descriptor: AGLYCON OF PEPLOMYCIN, COBALT (III) ION, HYDROGEN PEROXIDE
Authors:Caceres-Cortes, J, Sugiyama, H, Ikudome, K, Saito, I, Wang, A.H.-J.
Deposit date:1997-07-16
Release date:1999-07-30
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies.
Eur.J.Biochem., 244, 1997
8SFR
DownloadVisualize
BU of 8sfr by Molmil
WT CRISPR-Cas12a post nontarget strand cleavage.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand cleavage.
To Be Published
2F80
DownloadVisualize
BU of 2f80 by Molmil
HIV-1 Protease mutant D30N complexed with inhibitor TMC114
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, POL POLYPROTEIN, ...
Authors:Kovalevsky, A.Y, Weber, I.T.
Deposit date:2005-12-01
Release date:2006-03-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Effectiveness of Nonpeptide Clinical Inhibitor TMC-114 on HIV-1 Protease with Highly Drug Resistant Mutations D30N, I50V, and L90M.
J.Med.Chem., 49, 2006
2F93
DownloadVisualize
BU of 2f93 by Molmil
K Intermediate Structure of Sensory Rhodopsin II/Transducer Complex in Combination with the Ground State Structure
Descriptor: RETINAL, Sensory rhodopsin II, Sensory rhodopsin II transducer, ...
Authors:Moukhametzianov, R.I, Klare, J.P, Efremov, R.G, Baecken, C, Goeppner, A, Labahn, J, Engelhard, M, Bueldt, G, Gordeliy, V.I.
Deposit date:2005-12-05
Release date:2006-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.
Nature, 440, 2006
8SFJ
DownloadVisualize
BU of 8sfj by Molmil
WT CRISPR-Cas12a with a 10bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*AP*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:WT CRISPR-Cas12a with a 10bp R-loop
To Be Published
8SFH
DownloadVisualize
BU of 8sfh by Molmil
WT CRISPR-Cas12a with a 5bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (32-MER), RNA (27-MER)
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:WT CRISPR-Cas12a with a 5bp R-loop
To Be Published
1AI1
DownloadVisualize
BU of 1ai1 by Molmil
HIV-1 V3 LOOP MIMIC
Descriptor: AIB142, IGG1-KAPPA 59.1 FAB (HEAVY CHAIN), IGG1-KAPPA 59.1 FAB (LIGHT CHAIN)
Authors:Ghiara, J.B, Wilson, I.A.
Deposit date:1996-11-06
Release date:1997-05-15
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-based design of a constrained peptide mimic of the HIV-1 V3 loop neutralization site.
J.Mol.Biol., 266, 1997
8SFL
DownloadVisualize
BU of 8sfl by Molmil
WT CRISPR-Cas12a with a 15bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (40-MER), RNA (34-MER)
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 15bp R-loop
To Be Published
1A6G
DownloadVisualize
BU of 1a6g by Molmil
CARBONMONOXY-MYOGLOBIN, ATOMIC RESOLUTION
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Vojtechovsky, J, Chu, K, Berendzen, J, Sweet, R.M, Schlichting, I.
Deposit date:1998-02-25
Release date:1998-10-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structures of myoglobin-ligand complexes at near-atomic resolution.
Biophys.J., 77, 1999
8SFP
DownloadVisualize
BU of 8sfp by Molmil
WT CRISPR-Cas12a with the target strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (40-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:WT CRISPR-Cas12a with the target strand in the RuvC active site.
To Be Published
2RQG
DownloadVisualize
BU of 2rqg by Molmil
Structure of GSPT1/ERF3A-PABC
Descriptor: G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M, Nakanishi, T, Hosoda, N, Uchida, S, Hoshino, T, Katada, I, Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published

224931

數據於2024-09-11公開中

PDB statisticsPDBj update infoContact PDBjnumon