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PDB: 17965 results

3WEH
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Crystal structure of the human squalene synthase in complex with presqualene pyrophosphate
Descriptor: MAGNESIUM ION, Squalene synthase, {(1R,2R,3R)-2-[(3E)-4,8-dimethylnona-3,7-dien-1-yl]-2-methyl-3-[(1E,5E)-2,6,10-trimethylundeca-1,5,9-trien-1-yl]cyclopropyl}methyl trihydrogen diphosphate
Authors:Liu, C.I, Jeng, W.Y, Wang, A.H.J.
Deposit date:2013-07-07
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural insights into the catalytic mechanism of human squalene synthase.
Acta Crystallogr.,Sect.D, 70, 2014
3T0G
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IspH:HMBPP (substrate) structure of the T167C mutant
Descriptor: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER
Authors:Span, I, Graewert, T, Bacher, A, Eisenreich, W, Groll, M.
Deposit date:2011-07-20
Release date:2011-11-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Mutant IspH Proteins Reveal a Rotation of the Substrate's Hydroxymethyl Group during Catalysis.
J.Mol.Biol., 416, 2012
3T0F
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IspH:HMBPP (substrate) structure of the E126D mutant
Descriptor: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER
Authors:Span, I, Graewert, T, Bacher, A, Eisenreich, W, Groll, M.
Deposit date:2011-07-20
Release date:2011-11-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Mutant IspH Proteins Reveal a Rotation of the Substrate's Hydroxymethyl Group during Catalysis.
J.Mol.Biol., 416, 2012
3T3N
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Molecular basis for the recognition and cleavage of RNA (UUCCGU) by the bifunctional 5'-3' exo/endoribonuclease RNase J
Descriptor: Metal dependent hydrolase, O2'methyl-RNA, ZINC ION
Authors:Dorleans, A, Li de la Sierra-Gallay, I, Piton, J, Zig, L, Gilet, L, Putzer, H, Condon, C.
Deposit date:2011-07-25
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Molecular Basis for the Recognition and Cleavage of RNA by the Bifunctional 5'-3' Exo/Endoribonuclease RNase J.
Structure, 19, 2011
4AOF
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Selective small molecule inhibitor discovered by chemoproteomic assay platform reveals regulation of Th17 cell differentiation by PI3Kgamma
Descriptor: N-[6-(5-methylsulfonylpyridin-3-yl)-[1,2,4]triazolo[1,5-a]pyridin-2-yl]ethanamide, PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
Authors:Bergamini, G, Bell, K, Shimamura, S, Werner, T, Cansfield, A, Muller, K, Perrin, J, Rau, C, Ellard, K, Hopf, C, Doce, C, Leggate, D, Mangano, R, Mathieson, T, OMahony, A, Plavec, I, Rharbaoui, F, Reinhard, F, Savitski, M.M, Ramsden, N, Hirsch, E, Drewes, G, Rausch, O, Bantscheff, M, Neubauer, G.
Deposit date:2012-03-26
Release date:2012-05-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A Selective Inhibitor Reveals Pi3Kgamma Dependence of T(H)17 Cell Differentiation.
Nat.Chem.Biol., 8, 2012
4JAU
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Structural basis of a rationally rewired protein-protein interface (HK853mutant A268V, A271G, T275M, V294T and D297E)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histidine kinase
Authors:Podgornaia, A.I, Casino, P, Marina, A, Laub, M.T.
Deposit date:2013-02-19
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of a rationally rewired protein-protein interface critical to bacterial signaling
Structure, 21, 2013
4AIX
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BU of 4aix by Molmil
Crystallographic structure of an amyloidogenic variant, 3rC34Y, of the germinal line lambda 3
Descriptor: IG LAMBDA CHAIN V-IV REGION BAU
Authors:Villalba, M.I, Luna, O.D, Rudino-Pinera, E, Sanchez, R, Sanchez-Lopez, R, Rojas-Trejo, S, Olamendi-Portugal, T, Fernandez-Velasco, D.A, Becerril, B.
Deposit date:2012-02-15
Release date:2013-02-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Site-Directed Mutagenesis Reveals Regions Implicated in the Stability and Fiber Formation of Human Lambda3R Light Chains.
J.Biol.Chem., 290, 2015
4JG3
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Crystal structure of catabolite repression control protein (crc) from Pseudomonas aeruginosa
Descriptor: CHLORIDE ION, Catabolite repression control protein
Authors:Grishkovskaya, I, Milojevic, T, Sonnleitner, E, Blaesi, U, Djinovic-Carugo, K.
Deposit date:2013-02-28
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Pseudomonas aeruginosa Catabolite Repression Control Protein Crc Is Devoid of RNA Binding Activity
Plos One, 8, 2013
4JHP
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The crystal structure of the RPGR RCC1-like domain in complex with PDE6D
Descriptor: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, X-linked retinitis pigmentosa GTPase regulator
Authors:Waetzlich, D, Vetter, I, Wittinghofer, A, Ismail, S.
Deposit date:2013-03-05
Release date:2013-04-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The interplay between RPGR, PDE-delta and Arl2/3 regulate the ciliary targeting of farnesylated cargo.
Embo Rep., 14, 2013
4JBN
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Crystal structure of O-Acetyl Serine Sulfhydrylase from Entamoeba histolytica in complex with Serine acetyl transferase derived tetrapeptide, SPSI
Descriptor: Cysteine synthase, SAT derived tetrapeptide, SULFATE ION
Authors:Raj, I, Gourinath, S.
Deposit date:2013-02-20
Release date:2013-12-04
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Molecular basis of ligand recognition by OASS from E. histolytica: insights from structural and molecular dynamics simulation studies
Biochim.Biophys.Acta, 1830, 2013
4AR2
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Dodecahedron formed of penton base protein from adenovirus Ad3
Descriptor: CALCIUM ION, FIBER PROTEIN, L2 PROTEIN III (PENTON BASE)
Authors:Burmeister, W.P, Szolajska, E, Zochowska, M, Nerlo, B, Andreev, I, Schoehn, G, Andrieu, J.-P, Fender, P, Naskalska, A, Zubieta, C, Cusack, S, Chroboczek, J.
Deposit date:2012-04-20
Release date:2012-10-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Structural Basis for the Integrity of Adenovirus Ad3 Dodecahedron.
Plos One, 7, 2012
4A1M
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NMR Structure of protoporphyrin-IX bound murine p22HBP
Descriptor: HEME-BINDING PROTEIN 1
Authors:Goodfellow, B.J, Dias, J.S, Macedo, A.L, Ferreira, G.C, Peterson, F.C, Volkman, B.F, Duarte, I.C.N.
Deposit date:2011-09-15
Release date:2011-10-05
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The NMR Structure of Protoporphyrin-Ix Bound Murine P22Hbp
To be Published
3QHF
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Crystal Structure of Fab del2D1, a deletion variant of anti-influenza antibody 2D1
Descriptor: Human monoclonal antibody del2D1, Fab Heavy Chain, Fab Light Chain
Authors:Ekiert, D.C, Wilson, I.A.
Deposit date:2011-01-25
Release date:2011-02-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:An insertion mutation that distorts antibody binding site architecture enhances function of a human antibody.
MBio, 2, 2011
3QJC
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BU of 3qjc by Molmil
Human Hemoglobin A Mutant Beta H63L Carbonmonoxy-Form
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Birukou, I, Soman, J, Olson, J.S.
Deposit date:2011-01-28
Release date:2011-02-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Determination of Pathways for Oxygen Binding to Human HbA
Thesis
3QN8
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BU of 3qn8 by Molmil
HIV-1 protease (mutant Q7K L33I L63I) in complex with a novel inhibitor
Descriptor: (4aS,7aS)-1,4-bis(3-hydroxybenzyl)hexahydro-1H-pyrrolo[3,4-b]pyrazine-2,3-dione, CHLORIDE ION, Protease
Authors:Lindemann, I, Heine, A, Klebe, G.
Deposit date:2011-02-08
Release date:2012-02-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.382 Å)
Cite:Novel inhibitors for HIV-1 protease
To be Published
4JX7
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Crystal structure of Pim1 kinase in complex with inhibitor 2-[(trans-4-aminocyclohexyl)amino]-4-{[3-(trifluoromethyl)phenyl]amino}pyrido[4,3-d]pyrimidin-5(6H)-one
Descriptor: 2-[(trans-4-aminocyclohexyl)amino]-4-{[3-(trifluoromethyl)phenyl]amino}pyrido[4,3-d]pyrimidin-5(6H)-one, PIM1 consensus peptide, Serine/threonine-protein kinase pim-1
Authors:Lee, S.J, Han, B.G, Cho, J.W, Choi, J.S, Lee, J.K, Song, H.J, Koh, J.S, Lee, B.I.
Deposit date:2013-03-27
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of pim1 kinase in complex with a pyrido[4,3-d]pyrimidine derivative suggests a unique binding mode.
Plos One, 8, 2013
3QFG
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Structure of a putative lipoprotein from Staphylococcus aureus subsp. aureus NCTC 8325
Descriptor: Uncharacterized protein
Authors:Filippova, E.V, Halavaty, A, Shuvalova, L, Minasov, G, Dubrovska, I, Winsor, J, Kiryukhina, O, Papazisi, L, Bagnoli, F, Falugi, F, Bottomley, M, Grandi, G, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-01-21
Release date:2011-02-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Structure of a putative lipoprotein from Staphylococcus aureus subsp. aureus NCTC 8325
To be Published
3Q7C
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BU of 3q7c by Molmil
Exonuclease domain of Lassa virus nucleoprotein bound to manganese
Descriptor: MANGANESE (II) ION, Nucleoprotein, PHOSPHATE ION, ...
Authors:Hastie, K.M, Kimberlin, C.R, Zandonatti, M.A, MacRae, I.J, Saphire, E.O.
Deposit date:2011-01-04
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the Lassa virus nucleoprotein reveals a dsRNA-specific 3' to 5' exonuclease activity essential for immune suppression.
Proc.Natl.Acad.Sci.USA, 108, 2011
4IKI
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BU of 4iki by Molmil
Crystal structure of wild-type human transthyretin in complex with indomethacin
Descriptor: INDOMETHACIN, Transthyretin
Authors:Lima, L.M.T.R, Polikarpov, I.
Deposit date:2012-12-26
Release date:2013-01-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of wild-type human transthyretin in complex with indomethacin
To be Published
3QJB
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Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Birukou, I, Soman, J, Olson, J.S.
Deposit date:2011-01-28
Release date:2011-02-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determination of Pathways for Oxygen Binding to Human HbA
Thesis
4IFR
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BU of 4ifr by Molmil
2.40 Angstroms X-ray crystal structure of R239A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase from Pseudomonas fluorescens
Descriptor: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase, ZINC ION
Authors:Huo, L, Davis, I, Chen, L, Liu, A.
Deposit date:2012-12-14
Release date:2013-09-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.391 Å)
Cite:The power of two: arginine 51 and arginine 239* from a neighboring subunit are essential for catalysis in alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase.
J.Biol.Chem., 288, 2013
3WEI
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Crystal structure of the human squalene synthase Y73A mutant in complex with presqualene pyrophosphate
Descriptor: MANGANESE (II) ION, Squalene synthase, {(1R,2R,3R)-2-[(3E)-4,8-dimethylnona-3,7-dien-1-yl]-2-methyl-3-[(1E,5E)-2,6,10-trimethylundeca-1,5,9-trien-1-yl]cyclopropyl}methyl trihydrogen diphosphate
Authors:Liu, C.I, Jeng, W.Y, Wang, A.H.J.
Deposit date:2013-07-07
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural insights into the catalytic mechanism of human squalene synthase.
Acta Crystallogr.,Sect.D, 70, 2014
3I1G
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BU of 3i1g by Molmil
Crystal structure of a GCN4 leucine zipper mutant at 1.6 A resolution
Descriptor: General control protein GCN4
Authors:Diao, J.S, Tortajada, A, Yeh, J.I.
Deposit date:2009-06-26
Release date:2009-07-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a super leucine zipper, an extended two-stranded super long coiled coil.
Protein Sci., 19, 2010
3WGL
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BU of 3wgl by Molmil
STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GDP, DeltaT7GAN-GDP
Descriptor: Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
Authors:Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M.
Deposit date:2013-08-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.066 Å)
Cite:Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
3QP0
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HIV-1 protease (mutant Q7K L33I L63I) in complex with a novel inhibitor
Descriptor: (4aS,7aS)-1,4-bis[3-(hydroxymethyl)benzyl]hexahydro-1H-pyrrolo[3,4-b]pyrazine-2,3-dione, CHLORIDE ION, Protease
Authors:Lindemann, I, Heine, A, Klebe, G.
Deposit date:2011-02-11
Release date:2012-02-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Novel inhibitors for HIV-1 protease
To be Published

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