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PDB: 17822 results

6JEU
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BU of 6jeu by Molmil
K1U bound crystal peptide deformylase from Acinetobacter baumanii
Descriptor: (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, Peptide deformylase, ZINC ION
Authors:Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:2019-02-07
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:K1U bound crystal peptide deformylase from Acinetobacter baumanii
To be published
4G32
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BU of 4g32 by Molmil
Crystal Structure of a Phospholipid-Lipoxygenase Complex from Pseudomonas aeruginosa at 1.75A (P21212)
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradec-5-enoyloxy)propyl (11Z)-octadec-11-enoate, 15S-LIPOXYGENASE, FE (II) ION, ...
Authors:Carpena, X, Garreta, A, Val-Moraes, S.P, Garcia-Fernandez, Q, Fita, I.
Deposit date:2012-07-13
Release date:2013-11-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa.
Faseb J., 27, 2013
5ULC
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BU of 5ulc by Molmil
PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN PF10_0328
Descriptor: Bromodomain protein 1
Authors:Wernimont, A.K, Amaya, M.F, Lam, A, Ali, A, Zhang, A.Z, Kenzina, L, Lin, Y.H, MacKenzie, F, Kozieradzki, I, Cossar, D, Schapira, M, Bochkarev, A, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Weigelt, J, Hui, R, Walker, J.R, Qiu, W, Brand, V, Structural Genomics Consortium (SGC)
Deposit date:2017-01-24
Release date:2017-02-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN PF10_0328
To be published
3BZO
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BU of 3bzo by Molmil
Crystal structural of native EscU C-terminal domain
Descriptor: EscU, SULFATE ION
Authors:Zarivach, R, Deng, W, Vuckovic, M, Felise, H.B, Nguyen, H.V, Miller, S.I, Finlay, B.B, Strynadka, N.C.J.
Deposit date:2008-01-18
Release date:2008-04-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS.
Nature, 453, 2008
3BZV
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BU of 3bzv by Molmil
Crystal structural of the mutated T264A EscU C-terminal domain
Descriptor: EscU
Authors:Zarivach, R, Deng, W, Vuckovic, M, Felise, H.B, Nguyen, H.V, Miller, S.I, Finlay, B.B, Strynadka, N.C.J.
Deposit date:2008-01-18
Release date:2008-04-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS.
Nature, 453, 2008
6JFG
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BU of 6jfg by Molmil
K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Descriptor: (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:2019-02-08
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
To be published
4GY7
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BU of 4gy7 by Molmil
Crystallographic structure analysis of urease from Jack bean (Canavalia ensiformis) at 1.49 A Resolution
Descriptor: 1,2-ETHANEDIOL, ACETONE, BETA-MERCAPTOETHANOL, ...
Authors:Begum, A, Banumathi, S, Choudhary, M.I, Betzel, C.
Deposit date:2012-09-05
Release date:2012-11-07
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.492 Å)
Cite:Crystallographic structure analysis of urease from Jack bean (Canavalia ensiformis) at 1.49 A Resolution
To be Published
4YZK
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BU of 4yzk by Molmil
Crystal structure of the indole prenyltransferase TleC apo structure
Descriptor: Tryptophan dimethylallyltransferase
Authors:Mori, T, Morita, H, Abe, I.
Deposit date:2015-03-25
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016
5JX1
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BU of 5jx1 by Molmil
The neck-linker and alpha 7 helix of Mus musculus KIF3A fused to EB1
Descriptor: Chimera protein of Kinesin-like protein KIF3A and Microtubule-associated protein RP/EB family member 1
Authors:Phillips, R.K, Rayment, I.
Deposit date:2016-05-12
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Family-specific Kinesin Structures Reveal Neck-linker Length Based on Initiation of the Coiled-coil.
J.Biol.Chem., 291, 2016
4HFU
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BU of 4hfu by Molmil
Crystal structure of Fab 8M2 in complex with a H2N2 influenza virus hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 8M2 heavy chain, Fab 8M2 light chain, ...
Authors:Xu, R, Wilson, I.A.
Deposit date:2012-10-05
Release date:2013-02-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.106 Å)
Cite:A recurring motif for antibody recognition of the receptor-binding site of influenza hemagglutinin.
Nat.Struct.Mol.Biol., 20, 2013
6JEX
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BU of 6jex by Molmil
K4U bound crystal peptide deformylase from Acinetobacter baumanii
Descriptor: L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE, Peptide deformylase, ZINC ION
Authors:Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:2019-02-07
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:K4U bound crystal peptide deformylase from Acinetobacter baumanii
To be published
6T39
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BU of 6t39 by Molmil
Crystal structure of rsEGFP2 in its off-state determined by SFX
Descriptor: Green fluorescent protein
Authors:Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
Deposit date:2019-10-10
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
6JK7
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BU of 6jk7 by Molmil
Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Trigonal form
Descriptor: Pilus assembly protein
Authors:Megta, A.K, Mishra, A.K, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2019-02-27
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.204 Å)
Cite:Crystal structure of basal pilin SpaE reveals the molecular basis of its incorporation in the lactobacillar SpaFED pilus.
J.Struct.Biol., 207, 2019
5K87
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BU of 5k87 by Molmil
crystal structure of malonate bound to methylaconitate isomerase PrpF from Shewanella oneidensis
Descriptor: 2-methyl-aconitate isomerase, MALONATE ION
Authors:Rayment, I, Wetterhorn, K.
Deposit date:2016-05-27
Release date:2017-05-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.219 Å)
Cite:The PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cycle.
PLoS ONE, 12, 2017
4EB1
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BU of 4eb1 by Molmil
Hyperstable in-frame insertion variant of antithrombin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antithrombin-III
Authors:Martinez-Martinez, I, Johnson, D.J.D, Yamasaki, M, Corral, J, Huntington, J.A.
Deposit date:2012-03-23
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Type II antithrombin deficiency caused by a large in-frame insertion: structural, functional and pathological relevance.
J.Thromb.Haemost., 10, 2012
5U04
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BU of 5u04 by Molmil
Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase
Descriptor: PHOSPHATE ION, ZINC ION, Zika Virus NS5 RdRp
Authors:Godoy, A.S, Lima, G.M.A, Oliveira, K.I.Z, Torres, N.U, Maluf, F.V, Guido, R.V.C, Oliva, G.
Deposit date:2016-11-22
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase.
Nat Commun, 8, 2017
4GXR
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BU of 4gxr by Molmil
Structure of ATP bound RpMatB-BxBclM chimera B3
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CARBONATE ION, GLYCEROL, ...
Authors:Rank, K.C, Crosby, H.A, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2012-09-04
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights into the Substrate Specificity of the Rhodopseudomonas palustris Protein Acetyltransferase RpPat: IDENTIFICATION OF A LOOP CRITICAL FOR RECOGNITION BY RpPat.
J.Biol.Chem., 287, 2012
4EW2
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BU of 4ew2 by Molmil
The structure of human glycinamide ribonucleotide transformylase in complex with 10S-methylthio-DDATHF.
Descriptor: N-({4-[(1S)-4-(2,4-diamino-6-oxo-1,6-dihydropyrimidin-5-yl)-1-(methylsulfanyl)butyl]phenyl}carbonyl)-L-glutamic acid, PHOSPHATE ION, SULFATE ION, ...
Authors:Connelly, S, DeMartino, K, Boger, D.L, Wilson, I.A.
Deposit date:2012-04-26
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Biological and Structural Evaluation of 10R- and 10S-Methylthio-DDACTHF Reveals a New Role for Sulfur in Inhibition of Glycinamide Ribonucleotide Transformylase.
Biochemistry, 52, 2013
4HDP
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BU of 4hdp by Molmil
Crystal Structure of HIV-1 protease mutants I50V complexed with inhibitor GRL-0519
Descriptor: (3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate, CHLORIDE ION, HIV-1 Protease, ...
Authors:Shen, C.H, Zhang, H, Weber, I.T.
Deposit date:2012-10-02
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Novel P2 tris-tetrahydrofuran group in antiviral compound 1 (GRL-0519) fills the S2 binding pocket of selected mutants of HIV-1 protease.
J.Med.Chem., 56, 2013
4IFF
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BU of 4iff by Molmil
Structural organization of FtsB, a transmembrane protein of the bacterial divisome
Descriptor: Fusion of phage phi29 Gp7 protein and Cell division protein FtsB, GLYCEROL
Authors:LaPointe, L.M, Taylor, K.C, Subramaniam, S, Khadria, A, Rayment, I, Senes, A.
Deposit date:2012-12-14
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Organization of FtsB, a Transmembrane Protein of the Bacterial Divisome.
Biochemistry, 52, 2013
5KHG
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BU of 5khg by Molmil
HCN2 CNBD in complex with cytidine-3', 5'-cyclic monophosphate (cCMP)
Descriptor: 4-amino-1-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]pyrimidin-2(1H)-one, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Authors:Ng, L.C.T, Putrenko, I, Baronas, V, Van Petegem, F, Accili, E.A.
Deposit date:2016-06-14
Release date:2016-09-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.241 Å)
Cite:Cyclic Purine and Pyrimidine Nucleotides Bind to the HCN2 Ion Channel and Variably Promote C-Terminal Domain Interactions and Opening.
Structure, 24, 2016
3BER
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BU of 3ber by Molmil
Human DEAD-box RNA-helicase DDX47, conserved domain I in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, Probable ATP-dependent RNA helicase DDX47, ...
Authors:Karlberg, T, Busam, R.D, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
Deposit date:2007-11-20
Release date:2007-12-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Comparative Structural Analysis of Human DEAD-Box RNA Helicases.
Plos One, 5, 2010
3BF6
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BU of 3bf6 by Molmil
Thrombin:suramin complex
Descriptor: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, PHE-PRO-ARG, Thrombin, ...
Authors:Lima, L.M.T.R, Polikarpov, I, Monteiro, R.Q.
Deposit date:2007-11-20
Release date:2007-12-25
Last modified:2015-07-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and thermodynamic analysis of thrombin:suramin interaction in solution and crystal phases.
Biochim.Biophys.Acta, 1794, 2009
6H5Q
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BU of 6h5q by Molmil
Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers.
Descriptor: Nucleocapsid, RNA (5'-R(*AP*AP*AP*AP*AP*A)-3')
Authors:Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M.
Deposit date:2018-07-25
Release date:2019-03-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication.
Proc.Natl.Acad.Sci.USA, 116, 2019
6MOT
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BU of 6mot by Molmil
Bacteroides intestinalis feruloyl esterase, Bacint_01033
Descriptor: 1,2-ETHANEDIOL, Isoamylase N-terminal domain protein
Authors:Koropatkin, N.M, Pereira, G.V, Cann, I.
Deposit date:2018-10-04
Release date:2019-10-16
Last modified:2021-01-27
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021

223790

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