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PDB: 17965 results

4YHP
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BU of 4yhp by Molmil
Crystal structure of 309M3-B Fab in complex with H3K9me3 peptide
Descriptor: Fab Heavy Chain, Fab Light Chain, H3K9me3 peptide
Authors:Hattori, T, Dementieva, I.S, Montano, S.P, Koide, S.
Deposit date:2015-02-27
Release date:2016-02-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation.
Proc.Natl.Acad.Sci.USA, 113, 2016
1JHD
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BU of 1jhd by Molmil
Crystal Structure of Bacterial ATP Sulfurylase from the Riftia pachyptila Symbiont
Descriptor: BROMIDE ION, SULFATE ADENYLYLTRANSFERASE, SULFATE ION
Authors:Beynon, J.D, MacRae, I.J, Huston, S.L, Nelson, D.C, Segel, I.H, Fisher, A.J.
Deposit date:2001-06-27
Release date:2001-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of ATP sulfurylase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila.
Biochemistry, 40, 2001
8EAP
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BU of 8eap by Molmil
Cryo-EM structure of the in-situ gp10-gp26 from bacteriophage P22
Descriptor: Packaged DNA stabilization protein gp10, Tail needle protein gp26
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-29
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:In-situ structure of tail machine reveals mechanistic insights into P22 assembly
To Be Published
5M1T
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BU of 5m1t by Molmil
PaMucR Phosphodiesterase, c-di-GMP complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, MucR Phosphodiesterase
Authors:Hutchin, A, Tews, I, Walsh, M.A.
Deposit date:2016-10-10
Release date:2017-03-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Dimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases.
Sci Rep, 7, 2017
6URS
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BU of 6urs by Molmil
Sleeping Beauty transposase PAI subdomain mutant - H19Y
Descriptor: Sleeping Beauty transposase PAI subdomain
Authors:Nesmelova, I.V, Leighton, G.O, Yan, C, Lustig, J, Corona, R.I, Guo, J.T, Ivics, Z.
Deposit date:2019-10-24
Release date:2020-10-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:H19Y mutation in the primary DNA-recognition subdomain of the Sleeping Beauty transposase improves structural stability, transposon DNA-binding and transposition
To Be Published
5LP5
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BU of 5lp5 by Molmil
Complex between Penicillin-Binding Protein (PBP2) and MreC from Helicobacter pylori
Descriptor: Penicillin-binding protein 2 (Pbp2), Rod shape-determining protein (MreC)
Authors:Contreras-Martel, C, Martins, A, Ecobichon, C, Maragno, D.M, Mattei, P.J, El Ghachi, M, Hicham, S, Hardouin, P, Boneca, I.G, Dessen, A.
Deposit date:2016-08-11
Release date:2017-08-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Molecular architecture of the PBP2-MreC core bacterial cell wall synthesis complex.
Nat Commun, 8, 2017
8EAO
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BU of 8eao by Molmil
Cryo-EM structure of the in-situ gp1-gp4 complex from bacteriophage P22
Descriptor: Peptidoglycan hydrolase gp4, Portal protein
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-29
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:In-situ structure of tail machine reveals mechanistic insights into P22 assembly.
To Be Published
3FZJ
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BU of 3fzj by Molmil
TsaR low resolution crystal structure, tetragonal form
Descriptor: LysR type regulator of tsaMBCD
Authors:Monferrer, D, Tralau, T, Kertesz, M.A, Dix, I, Kikhney, A.G, Svergun, D.I, Uson, I.
Deposit date:2009-01-26
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (7.1 Å)
Cite:Structural studies on the full-length LysR-type regulator TsaR from Comamonas testosteroni T-2 reveal a novel open conformation of the tetrameric LTTR fold
Mol.Microbiol., 75, 2010
8QL6
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BU of 8ql6 by Molmil
Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 25 ps structure
Descriptor: Azo-Combretastatin A4 (trans), CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ...
Authors:Weinert, T, Wranik, M, Seidel, H.-P, Church, J, Steinmetz, M.O, Schapiro, I, Standfuss, J.
Deposit date:2023-09-19
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution
To Be Published
8QL8
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BU of 8ql8 by Molmil
Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 125 ps structure
Descriptor: Azo-Combretastatin A4 (trans), CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ...
Authors:Weinert, T, Wranik, M, Seidel, H.-P, Church, J, Steinmetz, M.O, Schapiro, I, Standfuss, J.
Deposit date:2023-09-19
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution
To Be Published
6XYV
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BU of 6xyv by Molmil
NMR solution structure of the Iron-Sulfur protein PioC from Rhodopseudomonas palustris TIE-1
Descriptor: IRON/SULFUR CLUSTER, PioC
Authors:Cantini, F, Trindade, I.
Deposit date:2020-01-31
Release date:2020-11-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:PRE-driven protein NMR structures: an alternative approach in highly paramagnetic systems.
Febs J., 288, 2021
8QL5
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BU of 8ql5 by Molmil
Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 1 ps structure
Descriptor: Azo-Combretastatin A4 (cis), CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ...
Authors:Weinert, T, Wranik, M, Seidel, H.-P, Church, J, Steinmetz, M.O, Schapiro, I, Standfuss, J.
Deposit date:2023-09-19
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution
To Be Published
8QL3
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BU of 8ql3 by Molmil
Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 233 fs structure
Descriptor: Azo-Combretastatin A4 (cis), CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ...
Authors:Weinert, T, Wranik, M, Seidel, H.-P, Church, J, Steinmetz, M.O, Schapiro, I, Standfuss, J.
Deposit date:2023-09-19
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution
To Be Published
8QL7
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BU of 8ql7 by Molmil
Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 35 ps structure
Descriptor: Azo-Combretastatin A4 (trans), CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ...
Authors:Weinert, T, Wranik, M, Seidel, H.-P, Church, J, Steinmetz, M.O, Schapiro, I, Standfuss, J.
Deposit date:2023-09-19
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution
To Be Published
8P7H
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BU of 8p7h by Molmil
The impact of molecular variants, crystallization conditions and space group on structure-ligand complexes: A case study on Bacterial Phosphotriesterase Variants and complexes
Descriptor: 1,2-ETHANEDIOL, 2-methylidene-1,3-dioxane-4,4-diol, FORMIC ACID, ...
Authors:Dym, O, Aggarwal, N, Ashani, Y, Albeck, S, Unger, T, Hamer Rogotner, S, Silman, I, Sussman, J.L.
Deposit date:2023-05-30
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.774 Å)
Cite:The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase.
Acta Crystallogr D Struct Biol, 79, 2023
1VZ5
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BU of 1vz5 by Molmil
Succinate Complex of AtsK
Descriptor: PUTATIVE ALKYLSULFATASE ATSK, SUCCINIC ACID
Authors:Mueller, I, Stueckl, A.C, Uson, I, Kertesz, M.
Deposit date:2004-05-14
Release date:2004-11-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Succinate Complex Crystal Structures of the Alpha-Ketoglutarate-Dependent Dioxygenase Atsk: Steric Aspects of Enzyme Self-Hydroxylation
J.Biol.Chem., 280, 2005
8P7M
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BU of 8p7m by Molmil
The impact of molecular variants, crystallization conditions and space group on structure-ligand complexes: A case study on Bacterial Phosphotriesterase Variants and complexes
Descriptor: FORMIC ACID, GLYCEROL, METHYLPHOSPHONIC ACID ESTER GROUP, ...
Authors:Dym, O, Aggarwal, N, Ashani, Y, Albeck, S, Unger, T, Hamer Rogotner, S, Silman, I, Sussman, J.L.
Deposit date:2023-05-30
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase.
Acta Crystallogr D Struct Biol, 79, 2023
5LWY
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BU of 5lwy by Molmil
Revised crystal structure of the human adiponectin receptor 2 in complex with a C18 free fatty acid
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Adiponectin receptor protein 2, GLYCEROL, ...
Authors:Leyrat, C, Vasiliauskaite-Brooks, I, Granier, S.
Deposit date:2016-09-19
Release date:2017-03-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into adiponectin receptors suggest ceramidase activity.
Nature, 6, 2017
6OC7
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BU of 6oc7 by Molmil
HMP42 Fab in complex with Protein G
Descriptor: Heavy chain of HMP42 Fab, Immunoglobulin G-binding protein G, Light chain for HMP42 Fab
Authors:Bernard, S.M, Wilson, I.A.
Deposit date:2019-03-22
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.296 Å)
Cite:A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.
Science, 366, 2019
1YDX
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BU of 1ydx by Molmil
Crystal structure of Type-I restriction-modification system S subunit from M. genitalium
Descriptor: CHLORIDE ION, type I restriction enzyme specificity protein MG438
Authors:Machado, B, Quijada, O, Pinol, J, Fita, I, Querol, E, Carpena, X.
Deposit date:2004-12-27
Release date:2005-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of a Putative Type I Restriction-Modification S Subunit from Mycoplasma genitalium
J.Mol.Biol., 351, 2005
7D66
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BU of 7d66 by Molmil
Crystal structure of retroviral protease-like domain of Ddi1 from Toxoplasma gondii
Descriptor: GLYCEROL, Ubiquitin family protein
Authors:Biswas, I.B, Killivalavan, A.K, Suguna, K.S.
Deposit date:2020-09-29
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.126 Å)
Cite:Structural and functional insights into the DNA damage-inducible protein 1 (Ddi1) from protozoa.
Curr Res Struct Biol, 4, 2022
5M2X
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BU of 5m2x by Molmil
Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033)
Descriptor: NS5, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Ferrero, D.S, Ruiz-Arroyo, V.M, Soler, N, Uson, I, Verdaguer, N.
Deposit date:2016-10-13
Release date:2018-06-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (4.991 Å)
Cite:Supramolecular arrangement of the full-length Zika virus NS5.
Plos Pathog., 15, 2019
8P35
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BU of 8p35 by Molmil
Mutant human titin immunoglobulin-like 21 domain - C3575S
Descriptor: Titin
Authors:Martinez-Martin, I, Crousilles, A, Mortensen, S.A, Alegre-Cebollada, J, Wilmanns, M.
Deposit date:2023-05-17
Release date:2023-11-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Titin domains with reduced core hydrophobicity cause dilated cardiomyopathy.
Cell Rep, 42, 2023
7UGG
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BU of 7ugg by Molmil
Cryo-EM structure of TRPV3 in complex with the anesthetic dyclonine
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Dyclonine, SODIUM ION, ...
Authors:Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
Deposit date:2022-03-24
Release date:2022-06-08
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural mechanism of TRPV3 channel inhibition by the anesthetic dyclonine.
Nat Commun, 13, 2022
5LJK
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BU of 5ljk by Molmil
Crystal structure of human apo CRBP1
Descriptor: Retinol-binding protein 1, SODIUM ION
Authors:Zanotti, G, Vallese, F, Berni, R, Menozzi, I.
Deposit date:2016-07-18
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and molecular determinants affecting the interaction of retinol with human CRBP1.
J. Struct. Biol., 197, 2017

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