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PDB: 17801 results

7P3L
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BU of 7p3l by Molmil
Isopenicillin N synthase in complex with Fe and the substrate analogue AadCyshomoCys
Descriptor: 2-AMINOHEXANEDIOIC ACID, CYSTEINE, D-homocysteine, ...
Authors:Rabe, P, Clifton, I, Schofield, C.J.
Deposit date:2021-07-08
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Isopenicillin N synthase in complex with Fe and the substrate analogue AadCyshomoCys
To Be Published
6ZN1
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BU of 6zn1 by Molmil
Trehalose transferase bound to alpha-D-glucopyranosyl-beta-galactopyranose from Thermoproteus uzoniensis
Descriptor: DI(HYDROXYETHYL)ETHER, THIOCYANATE ION, Trehalose phosphorylase/synthase, ...
Authors:Bento, I, Mestrom, L, Marsden, S.R, van der Eijk, H, Laustsen, J.U, Jeffries, C.M, Svergun, D.I, Hagedoorn, P.-H, Hanefeld, U.
Deposit date:2020-07-06
Release date:2021-01-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Anomeric Selectivity of Trehalose Transferase with Rare l-Sugars.
ACS Catal, 10, 2020
6ZNX
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Ribokinase from Thermus Species
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ribokinase
Authors:Timofeev, V.I, Abramchik, Y.A, Tuzova, E.S, Esipova, L.V, Mikheeva, O.O, Kostromina, M.A, Kuranova, I.P, Esipov, R.S.
Deposit date:2020-07-07
Release date:2020-07-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ribokinase from Thermus Species
To Be Published
5KUY
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BU of 5kuy by Molmil
Influenza hemagglutinin H3 A/Hong Kong/1/1968 in complex with designed inhibitor protein HSB.2A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Designed influenza inhibitor HSB.2A, ...
Authors:Bernard, S.M, Wilson, I.A.
Deposit date:2016-07-13
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site.
Nat. Biotechnol., 35, 2017
1BCT
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BU of 1bct by Molmil
THREE-DIMENSIONAL STRUCTURE OF PROTEOLYTIC FRAGMENT 163-231 OF BACTERIOOPSIN DETERMINED FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION
Descriptor: BACTERIORHODOPSIN
Authors:Nolde, D.E, Barsukov, I.L, Lomize, A.L, Arseniev, A.S.
Deposit date:1993-07-07
Release date:1994-04-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional structure of proteolytic fragment 163-231 of bacterioopsin determined from nuclear magnetic resonance data in solution.
Eur.J.Biochem., 206, 1992
1B71
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BU of 1b71 by Molmil
RUBRERYTHRIN
Descriptor: FE (III) ION, PROTEIN (RUBRERYTHRIN), ZINC ION
Authors:Sieker, L.C, Holmes, M, Le Trong, I, Turley, S, Santarsiero, B.D, Liu, M.-Y, Legall, J, Stenkamp, R.E.
Deposit date:1999-01-26
Release date:2000-01-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Alternative metal-binding sites in rubrerythrin.
Nat.Struct.Biol., 6, 1999
1BEA
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BU of 1bea by Molmil
BIFUNCTIONAL HAGEMAN FACTOR/AMYLASE INHIBITOR FROM MAIZE
Descriptor: BIFUNCTIONAL AMYLASE/SERINE PROTEASE INHIBITOR
Authors:Behnke, C.A, Yee, V.C, Le Trong, I, Pedersen, L.C, Stenkamp, R.E, Kim, S.S, Reeck, G.R, Teller, D.C.
Deposit date:1998-05-13
Release date:1998-08-12
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural determinants of the bifunctional corn Hageman factor inhibitor: x-ray crystal structure at 1.95 A resolution.
Biochemistry, 37, 1998
6OBZ
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BU of 6obz by Molmil
Crystal structure of FluA-20 Fab
Descriptor: Heavy chain of FluA-20 Fab, Light chain of FluA-20 Fab, Immunoglobulin light chain
Authors:Wilson, I.A, Lang, S.
Deposit date:2019-03-21
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A Site of Vulnerability on the Influenza Virus Hemagglutinin Head Domain Trimer Interface.
Cell, 177, 2019
1BBD
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BU of 1bbd by Molmil
THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2
Descriptor: IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN), IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN), SULFATE ION
Authors:Tormo, J, Blaas, D, Fita, I.
Deposit date:1992-05-05
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structure of the Fab fragment of a neutralizing antibody to human rhinovirus serotype 2.
Protein Sci., 1, 1992
1B7F
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BU of 1b7f by Molmil
SXL-LETHAL PROTEIN/RNA COMPLEX
Descriptor: PROTEIN (SXL-LETHAL PROTEIN), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Authors:Handa, N, Nureki, O, Kurimoto, K, Kim, I, Sakamoto, H, Shimura, Y, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-01-23
Release date:1999-05-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein.
Nature, 398, 1999
1B8W
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BU of 1b8w by Molmil
DEFENSIN-LIKE PEPTIDE 1
Descriptor: PROTEIN (DEFENSIN-LIKE PEPTIDE 1)
Authors:Torres, A.M, Wang, X, Fletcher, J.I, Alewood, D, Alewood, P.F, Smith, R, Simpson, R.J, Nicholson, G.M, Sutherland, S.K, Gallagher, C.H, King, G.F, Kuchel, P.W.
Deposit date:1999-02-02
Release date:1999-09-15
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a defensin-like peptide from platypus venom.
Biochem.J., 341, 1999
1A3A
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BU of 1a3a by Molmil
CRYSTAL STRUCTURE OF IIA MANNITOL FROM ESCHERICHIA COLI
Descriptor: MANNITOL-SPECIFIC EII
Authors:Van Montfort, R.L.M, Pijning, T, Kalk, K.H, Hangyi, I, Kouwijzer, M.L.C.E, Robillard, G.T, Dijkstra, B.W.
Deposit date:1998-01-19
Release date:1998-08-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of the Escherichia coli phosphotransferase IIAmannitol reveals a novel fold with two conformations of the active site.
Structure, 6, 1998
7PS3
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BU of 7ps3 by Molmil
Crystal structure of antibody Beta-32 Fab
Descriptor: Beta-32 heavy chain, Beta-32 light chain, CHLORIDE ION, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PS0
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BU of 7ps0 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with beta-24 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-24 heavy chain, Beta-24 light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PS4
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BU of 7ps4 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-38
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-38 Fab heavy chain, Beta-38 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PRZ
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BU of 7prz by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with beta-22 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-22 Fab heavy chain, Beta-22 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PS2
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BU of 7ps2 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-29 and Beta-53 Fabs
Descriptor: Beta-29 Fab heavy chain, Beta-29 Fab light chain, Beta-53 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7Q6E
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BU of 7q6e by Molmil
Beta049 fab in complex with SARS-CoV2 beta-Spike glycoprotein, The Beta mAb response underscores the antigenic distance to other SARS-CoV-2 variants
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-49 heavy chain, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
Deposit date:2021-11-07
Release date:2021-12-15
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PS6
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BU of 7ps6 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-44 and Beta-54 Fabs
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, Beta-44 Fab heavy chain, Beta-44 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7PIM
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BU of 7pim by Molmil
Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.
Descriptor: FE (III) ION, L-DOPAMINE, Regulatory domain alpha-helix, ...
Authors:Bueno-Carrasco, M.T, Cuellar, J, Santiago, C, Valpuesta, J.M, Martinez, A, Flydal, M.I.
Deposit date:2021-08-20
Release date:2021-12-22
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural mechanism for tyrosine hydroxylase inhibition by dopamine and reactivation by Ser40 phosphorylation.
Nat Commun, 13, 2022
15C8
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BU of 15c8 by Molmil
CATALYTIC ANTIBODY 5C8, FREE FAB
Descriptor: IGG 5C8 FAB (HEAVY CHAIN), IGG 5C8 FAB (LIGHT CHAIN)
Authors:Gruber, K, Wilson, I.A.
Deposit date:1998-03-18
Release date:1999-03-23
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ligand-Induced Conformational Changes in a Catalytic Antibody: Comparison of the Bound and Unbound Structure of Fab 5C8
To be Published
7Q0I
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BU of 7q0i by Molmil
Crystal structure of the N-terminal domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-43
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-10-14
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7Q0G
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BU of 7q0g by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-49 and FI-3A Fabs
Descriptor: Beta-49 Fab heavy chain, Beta-49 Fab light chain, CHLORIDE ION, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-10-14
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
5LNS
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BU of 5lns by Molmil
Crystal structure of Arabidopsis thaliana Pdx1-R5P complex
Descriptor: PHOSPHATE ION, Pyridoxal 5'-phosphate synthase subunit PDX1.3, RIBULOSE-5-PHOSPHATE
Authors:Rodrigues, M.J, Windeisen, V, Zhang, Y, Guedez, G, Weber, S, Strohmeier, M, Hanes, J.W, Royant, A, Evans, G, Sinning, I, Ealick, S.E, Begley, T.P, Tews, I.
Deposit date:2016-08-06
Release date:2017-01-18
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Lysine relay mechanism coordinates intermediate transfer in vitamin B6 biosynthesis.
Nat. Chem. Biol., 13, 2017
6OTR
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Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Pavelich, I.P, Hoffer, E.D, Maehigashi, T, Dunham, C.M.
Deposit date:2019-05-03
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability.
Nucleic Acids Res., 47, 2019

223532

PDB entries from 2024-08-07

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