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PDB: 166 results

6TB7
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BU of 6tb7 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)
Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-01
Release date:2020-09-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch.
Rna, 26, 2020
6TF2
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BU of 6tf2 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BROMIDE ION, Chains: A, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-12
Release date:2020-09-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
6TFH
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BU of 6tfh by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+)
Descriptor: Chains: A, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
4BW0
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BU of 4bw0 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7, SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-06-29
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
4C4W
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BU of 4c4w by Molmil
Structure of a rare, non-standard sequence k-turn bound by L7Ae protein
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, DIHYDROGENPHOSPHATE ION, TSKT-23, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-09-09
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein
Nucleic Acids Res., 42, 2014
4C40
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BU of 4c40 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3'
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-08-28
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
4CS1
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BU of 4cs1 by Molmil
Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2014-03-03
Release date:2014-11-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function.
Nat.Commun., 5, 2014
3CWB
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BU of 3cwb by Molmil
Chicken Cytochrome BC1 Complex inhibited by an iodinated analogue of the polyketide Crocacin-D
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, AZIDE ION, CARDIOLIPIN, ...
Authors:Huang, L, Cromartie, T, Viner, R, Crowley, P.J, Berry, E.A.
Deposit date:2008-04-21
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D.
Bioorg.Med.Chem., 16, 2008
3OWI
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BU of 3owi by Molmil
Crystal structure of the glycine riboswitch bound to glycine
Descriptor: Domain II of glycine riboswitch, GLYCINE, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXD
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BU of 3oxd by Molmil
Crystal structure of glycine riboswitch with two mutations
Descriptor: MAGNESIUM ION, domain II of glycine riboswitch
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OWW
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BU of 3oww by Molmil
Crystal structure of the glycine riboswitch bound to glycine
Descriptor: GLYCINE, MAGNESIUM ION, domain II of glycine riboswitch
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-20
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXE
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BU of 3oxe by Molmil
crystal structure of glycine riboswitch, Mn2+ soaked
Descriptor: GLYCINE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OWZ
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BU of 3owz by Molmil
Crystal structure of glycine riboswitch, soaked in Iridium
Descriptor: Domain II of glycine riboswitch, GLYCINE, IRIDIUM HEXAMMINE ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-20
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.949 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXB
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BU of 3oxb by Molmil
Crystal structure of glycine riboswitch with single mutation
Descriptor: Domain II of glycine riboswitch, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.947 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXM
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BU of 3oxm by Molmil
crystal structure of glycine riboswitch, Tl-Acetate soaked
Descriptor: GLYCINE, MAGNESIUM ION, THALLIUM (I) ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXJ
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BU of 3oxj by Molmil
crystal structure of glycine riboswitch, soaked in Ba2+
Descriptor: BARIUM ION, GLYCINE, MAGNESIUM ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OX0
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BU of 3ox0 by Molmil
Crystal structure of glycine riboswitch, unbound state
Descriptor: Domain II of glycine riboswitch, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-20
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.049 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3SUH
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BU of 3suh by Molmil
Crystal structure of THF riboswitch, bound with 5-formyl-THF
Descriptor: N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, Riboswitch, SODIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SUX
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BU of 3sux by Molmil
Crystal structure of THF riboswitch, bound with THF
Descriptor: 5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID, Riboswitch, SODIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SUY
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BU of 3suy by Molmil
Crystal structure of THF riboswitch, unbound status
Descriptor: riboswitch
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011
3L72
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BU of 3l72 by Molmil
Chicken cytochrome BC1 complex with kresoxim-I-dimethyl bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CARDIOLIPIN, CYTOCHROME B, ...
Authors:Huang, L, Zhang, Z, Berry, E.A.
Deposit date:2009-12-27
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "DISTAL" Qo inhibitors.
To be Published
3L70
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BU of 3l70 by Molmil
Cytochrome BC1 complex from chicken with trifloxystrobin bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CARDIOLIPIN, Coenzyme Q10, ...
Authors:Huang, L, Berry, E.A.
Deposit date:2009-12-27
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "distal" Qo inhibitors.
To be Published
3L75
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BU of 3l75 by Molmil
Cytochrome BC1 complex from chicken with fenamidone bound
Descriptor: (5S)-5-methyl-2-(methylsulfanyl)-5-phenyl-3-(phenylamino)-3,5-dihydro-4H-imidazol-4-one, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, AZIDE ION, ...
Authors:Huang, L, Berry, E.A.
Deposit date:2009-12-28
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:FAMOXADONE AND RELATED INHIBITORS BIND LIKE METHOXY ACRYLATE INHIBITORS IN THE Qo SITE OF THE BC1 COMPL AND FIX THE RIESKE IRON-SULFUR PROTEIN IN A POSITIO CLOSE TO BUT DISTINCT FROM THAT SEEN WITH STIGMATELLIN AND OTHER "DISTAL" Qo INHIBITORS.
To be Published
3L71
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BU of 3l71 by Molmil
Cytochrome BC1 complex from chicken with azoxystrobin bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CARDIOLIPIN, Coenzyme Q10, ...
Authors:Huang, L, Berry, E.A.
Deposit date:2009-12-27
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "DISTAL" Qo inhibitors.
To be Published
3L74
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BU of 3l74 by Molmil
Cytochrome BC1 complex from chicken with famoxadone bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, AZIDE ION, CARDIOLIPIN, ...
Authors:Huang, L, Berry, E.A.
Deposit date:2009-12-28
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "DISTAL" Qo inhibitors.
To be Published

220472

數據於2024-05-29公開中

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