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PDB: 54 件
6YUF
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BU of 6yuf by Molmil
Cohesin complex with loader gripping DNA
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cohesin subunit rad21, ...
著者Higashi, T.L, Eickhoff, P, Sousa, J.S, Costa, A, Uhlmann, F.
登録日2020-04-27
公開日2020-08-19
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.94 Å)
主引用文献A Structure-Based Mechanism for DNA Entry into the Cohesin Ring.
Mol.Cell, 79, 2020
3GGI
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BU of 3ggi by Molmil
Locating monovalent cations in one turn of G/C rich B-DNA
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, THALLIUM (I) ION
著者Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Locating monovalent cations in one turn of G/C rich B-DNA
To be Published
3GGK
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BU of 3ggk by Molmil
Locating monovalent cations in one turn of G/C rich B-DNA
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, RUBIDIUM ION
著者Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.87 Å)
主引用文献Locating monovalent cations in one turn of G/C rich B-DNA
To be Published
4P70
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BU of 4p70 by Molmil
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2014-03-25
公開日2014-08-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4Q2U
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BU of 4q2u by Molmil
Crystal structure of the E. coli DinJ-YafQ toxin-antitoxin complex
分子名称: Antitoxin DinJ, SULFATE ION, mRNA interferase YafQ
著者Maehigashi, T, Ruangprasert, A, Dunham, C.M.
登録日2014-04-09
公開日2014-06-11
最終更新日2014-08-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanisms of Toxin Inhibition and Transcriptional Repression by Escherichia coli DinJ-YafQ.
J.Biol.Chem., 289, 2014
3FT6
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BU of 3ft6 by Molmil
Crystal Structure of Proflavine in Complex with a DNA hexamer duplex
分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', COBALT HEXAMMINE(III), PROFLAVIN
著者Maehigashi, T, Persil, O, Hud, N.V, Williams, L.D.
登録日2009-01-12
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Crystal Structure of Proflavine in Complex with a DNA hexamer duplex
To be Published
1VVJ
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BU of 1vvj by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-05-24
公開日2014-08-06
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.440001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4L71
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BU of 4l71 by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-13
公開日2014-08-06
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.900001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4L47
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BU of 4l47 by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-07
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.220001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ
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BU of 4lfz by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-27
公開日2014-08-06
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.92000055 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LEL
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BU of 4lel by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-25
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.90000033 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LNT
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BU of 4lnt by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-12
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LSK
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BU of 4lsk by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-22
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.48000622 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LT8
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BU of 4lt8 by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-23
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.14000177 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
3U89
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BU of 3u89 by Molmil
Crystal structure of one turn of g/c rich b-dna revisited
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION
著者Maehigashi, T, Woods, K.K, Moulaei, T, Komeda, S, Williams, L.D.
登録日2011-10-16
公開日2011-11-09
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (0.96 Å)
主引用文献B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.
Nucleic Acids Res., 40, 2012
3UZ0
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BU of 3uz0 by Molmil
Crystal Structure of SpoIIIAH and SpoIIQ Complex
分子名称: SULFATE ION, Stage II sporulation protein Q, Stage III sporulation protein AH
著者Maehigashi, T, Meisner, J, Dunham, C.M.
登録日2011-12-07
公開日2012-03-21
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Structure of the basal components of a bacterial transporter.
Proc.Natl.Acad.Sci.USA, 109, 2012
1IPF
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BU of 1ipf by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE
分子名称: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IPE
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BU of 1ipe by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1UF2
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BU of 1uf2 by Molmil
The Atomic Structure of Rice dwarf Virus (RDV)
分子名称: Core protein P3, Outer capsid protein P8, Structural protein P7
著者Nakagawa, A, Miyazaki, N, Taka, J, Naitow, H, Ogawa, A, Fujimoto, Z, Mizuno, H, Higashi, T, Watanabe, Y, Omura, T, Cheng, R.H, Tsukihara, T.
登録日2003-05-23
公開日2003-10-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.
Structure, 11, 2003
1VGN
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BU of 1vgn by Molmil
Structure-based design of the irreversible inhibitors to metallo--lactamase (IMP-1)
分子名称: 3-OXO-3-[(3-OXOPROPYL)SULFANYL]PROPANE-1-THIOLATE, ACETIC ACID, Beta-lactamase IMP-1, ...
著者Kurosaki, H, Yamaguchi, Y, Higashi, T, Soga, K, Matsueda, S, Misumi, S, Yamagata, Y, Arakawa, Y, Goto, M.
登録日2004-04-27
公開日2005-06-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Irreversible Inhibition of Metallo-beta-lactamase (IMP-1) by 3-(3-Mercaptopropionylsulfanyl)propionic Acid Pentafluorophenyl Ester
Angew.Chem.Int.Ed.Engl., 44, 2005
2Z6E
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BU of 2z6e by Molmil
Crystal Structure of Human DAAM1 FH2
分子名称: Disheveled-associated activator of morphogenesis 1
著者Yamashita, M, Higashi, T, Sato, Y, Shirakawa, R, Kita, T, Horiuchi, H, Fukai, S, Nureki, O.
登録日2007-07-31
公開日2008-05-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of human DAAM1 formin homology 2 domain
Genes Cells, 12, 2007
3A52
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BU of 3a52 by Molmil
Crystal structure of cold-active alkailne phosphatase from psychrophile Shewanella sp.
分子名称: Cold-active alkaline phosphatase, MAGNESIUM ION, SULFATE ION, ...
著者Tsuruta, H, Mikami, B, Higashi, T, Aizono, Y.
登録日2009-07-24
公開日2010-04-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp.
Biosci.Biotechnol.Biochem., 74, 2010
4W4G
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BU of 4w4g by Molmil
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Schureck, M.A, Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2014-08-14
公開日2015-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
4V8J
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BU of 4v8j by Molmil
Crystal structure of the bacterial ribosome ram mutation G347U.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2011-12-20
公開日2014-07-09
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state.
Proc.Natl.Acad.Sci.USA, 110, 2013
4V97
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BU of 4v97 by Molmil
Crystal structure of the bacterial ribosome ram mutation G299A.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2012-04-06
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.516 Å)
主引用文献Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

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