2RST
 
 | | NMR structure of the C-terminal domain of EW29 | | Descriptor: | 29-kDa galactose-binding lectin | | Authors: | Hemmi, H. | | Deposit date: | 2012-05-29 | | Release date: | 2013-04-17 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | NMR structure and dynamics of the C-terminal domain of R-type lectin from the earthworm Lumbricus terrestris
Febs J., 280, 2013
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1G10
 | | TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE | | Descriptor: | TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR | | Authors: | Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G. | | Deposit date: | 2000-10-10 | | Release date: | 2001-05-09 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
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1G11
 | | TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE | | Descriptor: | TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR | | Authors: | Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G. | | Deposit date: | 2000-10-10 | | Release date: | 2001-05-09 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
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1Y1C
 | | Solution structure of Anemonia elastase inhibitor analogue | | Descriptor: | Elastase inhibitor | | Authors: | Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y. | | Deposit date: | 2004-11-18 | | Release date: | 2005-07-19 | | Last modified: | 2024-10-16 | | Method: | SOLUTION NMR | | Cite: | Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
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1Y1B
 | | Solution structure of Anemonia elastase inhibitor | | Descriptor: | Elastase inhibitor | | Authors: | Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y. | | Deposit date: | 2004-11-18 | | Release date: | 2005-07-19 | | Last modified: | 2022-03-02 | | Method: | SOLUTION NMR | | Cite: | Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
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5GVO
 | | Solution NMR structure of a new lasso peptide sphaericin | | Descriptor: | Uncharacterized protein | | Authors: | Hemmi, H, Kodani, S, Inoue, Y, Suzuki, M, Dohra, H, Suzuki, T, Ohnishi-Kameyama, M. | | Deposit date: | 2016-09-06 | | Release date: | 2017-04-05 | | Method: | SOLUTION NMR | | Cite: | Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica
Eur.J.Org.Chem., 2017
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5ZCN
 | | Solution NMR structure of a new lasso peptide brevunsin | | Descriptor: | brevunsin | | Authors: | Hemmi, H, Kodani, S, Miyake, Y, Kaweewan, I, Nakagawa, H. | | Deposit date: | 2018-02-19 | | Release date: | 2018-10-17 | | Last modified: | 2024-10-09 | | Method: | SOLUTION NMR | | Cite: | Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea
J. Ind. Microbiol. Biotechnol., 45, 2018
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6AK0
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5XM4
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1IY6
 | | Solution structure of OMSVP3 variant, P14C/N39C | | Descriptor: | OMSVP3 | | Authors: | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | | Deposit date: | 2002-07-23 | | Release date: | 2003-03-11 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
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1IY5
 | | Solution structure of wild type OMSVP3 | | Descriptor: | OMSVP3 | | Authors: | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | | Deposit date: | 2002-07-23 | | Release date: | 2003-03-11 | | Last modified: | 2024-10-30 | | Method: | SOLUTION NMR | | Cite: | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
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1IW4
 | | Solution structure of ascidian trypsin inhibitor | | Descriptor: | trypsin inhibitor | | Authors: | Hemmi, H, Yoshida, T, Kumazaki, T, Nemoto, N, Hasegawa, J, Nishioka, F, Kyogoku, Y, Yokosawa, H, Kobayashi, Y. | | Deposit date: | 2002-04-19 | | Release date: | 2002-08-28 | | Last modified: | 2024-10-09 | | Method: | SOLUTION NMR | | Cite: | Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
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7BW5
 | | a new lasso peptide koreensin | | Descriptor: | lasso peptide koreensin | | Authors: | Hemmi, H, Kodani, S. | | Deposit date: | 2020-04-13 | | Release date: | 2020-09-09 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | Heterologous production of new lasso peptide koreensin based on genome mining.
J Antibiot (Tokyo), 74, 2021
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1KV4
 | | Solution structure of antibacterial peptide (Moricin) | | Descriptor: | moricin | | Authors: | Hemmi, H, Ishibashi, J, Hara, S, Yamakawa, M. | | Deposit date: | 2002-01-25 | | Release date: | 2002-05-22 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | Solution structure of moricin, an antibacterial peptide, isolated from the silkworm Bombyx mori.
FEBS Lett., 518, 2002
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1IYC
 | | Solution structure of antifungal peptide, scarabaecin | | Descriptor: | scarabaecin | | Authors: | Hemmi, H, Ishibashi, J, Tomie, T, Yamakawa, M. | | Deposit date: | 2002-08-05 | | Release date: | 2003-06-24 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Structural Basis for New Pattern of Conserved Amino Acid Residues Related to Chitin-binding in the Antifungal Peptide from the Coconut Rhinoceros Beetle Oryctes rhinoceros
J.BIOL.CHEM., 278, 2003
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4Z7C
 | | Diphosphomevalonate decarboxylase from the Sulfolobus solfataricus, space group h32 | | Descriptor: | Diphosphomevalonate decarboxylase, GLYCEROL, PHOSPHATE ION, ... | | Authors: | Unno, H, Hattori, A, Hemmi, H. | | Deposit date: | 2015-04-07 | | Release date: | 2015-09-16 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | In Vivo Formation of the Protein Disulfide Bond That Enhances the Thermostability of Diphosphomevalonate Decarboxylase, an Intracellular Enzyme from the Hyperthermophilic Archaeon Sulfolobus solfataricus
J.Bacteriol., 197, 2015
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4Z7Y
 | | diphosphomevalonate decarboxylase from the Sulfolobus solfataricus, space group P21 | | Descriptor: | Diphosphomevalonate decarboxylase, SULFATE ION | | Authors: | Hattori, A, Unno, H, Hemmi, H. | | Deposit date: | 2015-04-08 | | Release date: | 2015-09-16 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | In Vivo Formation of the Protein Disulfide Bond That Enhances the Thermostability of Diphosphomevalonate Decarboxylase, an Intracellular Enzyme from the Hyperthermophilic Archaeon Sulfolobus solfataricus
J.Bacteriol., 197, 2015
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2OGY
 | | Asn199Ala Mutant of the 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.3 Angstrom resolution | | Descriptor: | 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase, CALCIUM ION | | Authors: | Doukov, T.I, Drennan, C.L, Hemmi, H, Ragsdale, S.W. | | Deposit date: | 2007-01-09 | | Release date: | 2007-01-23 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases.
J.Biol.Chem., 282, 2007
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5GMD
 | | Crystal structure of Sulfolobus solfataricus diphosphomevalonate decarboxylase in complex with ATP-gamma-S | | Descriptor: | (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID, ADENOSINE MONOPHOSPHATE, Diphosphomevalonate decarboxylase, ... | | Authors: | Unno, H, Hemmi, H, Hattori, A. | | Deposit date: | 2016-07-13 | | Release date: | 2016-12-28 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem., 292, 2017
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5GME
 | | Crystal structure of Sulfolobus solfataricus Diphosphomevalonate decarboxylase in complex with ADP | | Descriptor: | (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... | | Authors: | Unno, H, Hemmi, H, Hattori, A. | | Deposit date: | 2016-07-13 | | Release date: | 2016-12-28 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem., 292, 2017
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3VKJ
 | | Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form | | Descriptor: | 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Isopentenyl-diphosphate delta-isomerase | | Authors: | Nakatani, H, Goda, S, Unno, H, Nagai, T, Yoshimura, T, Hemmi, H. | | Deposit date: | 2011-11-17 | | Release date: | 2012-05-30 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Substrate-Induced Change in the Quaternary Structure of Type 2 Isopentenyl Diphosphate Isomerase from Sulfolobus shibatae.
J.Bacteriol., 194, 2012
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2E7F
 | | 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 Angsrom resolution | | Descriptor: | 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase, CALCIUM ION | | Authors: | Doukov, T.I, Drennan, C.L, Hemmi, H, Ragsdale, S.W. | | Deposit date: | 2007-01-09 | | Release date: | 2007-01-30 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases.
J.Biol.Chem., 282, 2007
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1X22
 | | Solution structure of a novel moricin analogue, an antibacterial peptide from a lepidopteran insect, Spodoptera litura | | Descriptor: | moricin | | Authors: | Oizumi, Y, Hemmi, H, Minami, M, Asaoka, A, Yamakawa, M. | | Deposit date: | 2005-04-18 | | Release date: | 2005-09-06 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Isolation, gene expression and solution structure of a novel moricin analogue, antibacterial peptide from a lepidopteran insect, Spodoptera litura
Biochim.Biophys.Acta, 1752, 2005
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1YT6
 | | NMR structure of peptide SD | | Descriptor: | peptide SD | | Authors: | Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I. | | Deposit date: | 2005-02-10 | | Release date: | 2005-09-27 | | Last modified: | 2024-10-23 | | Method: | SOLUTION NMR | | Cite: | Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Febs J., 272, 2005
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7CC3
 | | Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: co-FG) | | Descriptor: | (2R)-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,2-diol, (2S)-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,2-diol, 2-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,3-diol, ... | | Authors: | Unno, H, Hemmi, H. | | Deposit date: | 2020-06-16 | | Release date: | 2021-04-28 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.72 Å) | | Cite: | A versatile cis-prenyltransferase from Methanosarcina mazei catalyzes both C- and O-prenylations.
J.Biol.Chem., 296, 2021
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