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PDB: 295 件

8V3X
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CryoEM Structure of Diffocin - precontracted - Trunk
分子名称: Sheath (CD1363), Tube (CD1364)
著者Cai, X.Y, He, Y, Zhou, Z.H.
登録日2023-11-28
公開日2024-08-28
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Atomic structures of a bacteriocin targeting Gram-positive bacteria.
Nat Commun, 15, 2024
8V40
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CryoEM Structure of Diffocin - postcontracted - Collar - final state
分子名称: Collar (CD1362), Sheath (CD1363), Tube (CD1364)
著者Cai, X.Y, He, Y, Zhou, Z.H.
登録日2023-11-28
公開日2024-08-28
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Atomic structures of a bacteriocin targeting Gram-positive bacteria.
Nat Commun, 15, 2024
7DV4
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BU of 7dv4 by Molmil
Crystal structure of anti-CTLA-4 VH domain in complex with human CTLA-4
分子名称: 1,2-ETHANEDIOL, 4003-1(VH), Cytotoxic T-lymphocyte protein 4
著者Li, H, Gan, X, He, Y.
登録日2021-01-12
公開日2022-01-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献An anti-CTLA-4 heavy chain-only antibody with enhanced T reg depletion shows excellent preclinical efficacy and safety profile.
Proc.Natl.Acad.Sci.USA, 119, 2022
8W6I
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BU of 8w6i by Molmil
Cryo-EM structure of Escherichia coli Str K12 FtsEX complex with ATP-gamma-S in peptidisc
分子名称: Cell division ATP-binding protein FtsE, Cell division protein FtsX, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
著者Li, J, Xu, X, He, Y, Luo, M.
登録日2023-08-29
公開日2023-12-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM structure of Escherichia coli Str K12 FtsEX complex with ATP-gamma-S in peptidisc
To Be Published
8W6J
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BU of 8w6j by Molmil
Cryo-EM structure of Escherichia coli Str K12 FtsE(E163Q)X/EnvC complex with ATP in peptidisc
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division ATP-binding protein FtsE, Cell division protein FtsX, ...
著者Li, J, Xu, X, He, Y, Luo, M.
登録日2023-08-29
公開日2023-12-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structure of Escherichia coli Str K12 FtsE(E163Q)X/EnvC complex with ATP in peptidisc
To Be Published
7DPX
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BU of 7dpx by Molmil
Crystal structure of the SRCR domain of human SCARA1/CD204
分子名称: CALCIUM ION, Macrophage scavenger receptor types I and II
著者Cheng, C, He, Y.
登録日2020-12-21
公開日2021-07-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Recognition of lipoproteins by scavenger receptor class A members.
J.Biol.Chem., 297, 2021
7DVA
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Structure of wild type Bt4394, a GH20 family sulfoglycosidase, in complex with 6S-GlcNAc
分子名称: 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, GLYCEROL
著者Zhang, Z, He, Y, Jin, Y.
登録日2021-01-13
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 13, 2023
7DUP
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Apo structure of wild type Bt4394, a GH20 family sulfoglycosidase
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-N-acetylhexosaminidase, CHLORIDE ION, ...
著者Zhang, Z, He, Y, Jin, Y.
登録日2021-01-10
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 13, 2023
7DVB
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D335N variant of Bt4394 in complex with 6SO3-NAG-oxazoline intermediate
分子名称: 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, [(3~{a}~{R},5~{R},6~{S},7~{R},7~{a}~{R})-2-methyl-6,7-bis(oxidanyl)-5,6,7,7~{a}-tetrahydro-3~{a}~{H}-pyrano[3,2-d][1,3]oxazol-1-ium-5-yl]methyl sulfate
著者Zhang, Z, He, Y, Jin, Y.
登録日2021-01-13
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 13, 2023
8GA8
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BU of 8ga8 by Molmil
Structure of the yeast (HDAC) Rpd3L complex
分子名称: Histone deacetylase RPD3, Transcriptional regulatory protein DEP1, Transcriptional regulatory protein PHO23, ...
著者Patel, A.B, Radhakrishnan, I, He, Y.
登録日2023-02-22
公開日2023-07-12
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of the Saccharomyces cerevisiae Rpd3L histone deacetylase complex.
Nat Commun, 14, 2023
6JLI
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BU of 6jli by Molmil
Crystal structure of CTLD7 domain of human PLA2R
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Secretory phospholipase A2 receptor
著者Yu, B, Hu, Z, Kong, D, Cheng, C, He, Y.
登録日2019-03-06
公開日2019-07-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献Crystal structure of the CTLD7 domain of human M-type phospholipase A2 receptor.
J.Struct.Biol., 207, 2019
7EK6
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BU of 7ek6 by Molmil
Structure of viral peptides IPB19/N52
分子名称: Spike protein S2
著者Yu, D, Qin, B, Cui, S, He, Y.
登録日2021-04-04
公開日2021-06-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.243 Å)
主引用文献Structure-based design and characterization of novel fusion-inhibitory lipopeptides against SARS-CoV-2 and emerging variants.
Emerg Microbes Infect, 10, 2021
5XBF
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BU of 5xbf by Molmil
Crystal Structure of Myo7b C-terminal MyTH4-FERM in complex with USH1C PDZ3
分子名称: ACETATE ION, D-MALATE, GLYCEROL, ...
著者Li, J, He, Y, Weck, W.L, Lu, Q, Tyska, M.J, Zhang, M.
登録日2017-03-17
公開日2017-05-17
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Structure of Myo7b/USH1C complex suggests a general PDZ domain binding mode by MyTH4-FERM myosins.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7WHW
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BU of 7whw by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with AMPPCP (E1-ATP state)
分子名称: Alkylphosphocholine resistance protein LEM3, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2021-12-31
公開日2022-03-23
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7WHV
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BU of 7whv by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with beryllium fluoride (E2P state)
分子名称: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Alkylphosphocholine resistance protein LEM3, BERYLLIUM TRIFLUORIDE ION, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2021-12-31
公開日2022-03-23
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7F7F
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BU of 7f7f by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in yeast lipids with beryllium fluoride (resting state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkylphosphocholine resistance protein LEM3, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2021-06-29
公開日2022-03-23
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DRX
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BU of 7drx by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with beryllium fluoride (E2P state)
分子名称: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Alkylphosphocholine resistance protein LEM3, BERYLLIUM TRIFLUORIDE ION, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2020-12-30
公開日2022-03-23
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSH
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BU of 7dsh by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with AMPPCP (E1-ATP state)
分子名称: Alkylphosphocholine resistance protein LEM3, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2020-12-31
公開日2022-03-23
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.67 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSI
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BU of 7dsi by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in yeast lipids with AMPPCP ( resting state )
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkylphosphocholine resistance protein LEM3, ...
著者Xu, J, He, Y, Wu, X, Li, L.
登録日2020-12-31
公開日2022-03-23
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
3FXV
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Identification of an N-oxide pyridine GW4064 analogue as a potent FXR agonist
分子名称: 12-meric peptide from Nuclear receptor coactivator 1, 6-(4-{[3-(3,5-dichloropyridin-4-yl)-5-(1-methylethyl)isoxazol-4-yl]methoxy}-2-methylphenyl)-1-methyl-1H-indole-3-carbox ylic acid, NR1H4 protein
著者Feng, S, Yang, M, He, Y, Chen, L, Zhang, Z, Wang, Z, Hong, D, Richter, H, Benson, G.M, Bleicher, K, Grether, U, Martin, R, Plancher, J.-M, Kuhn, B, Rudolph, M.G.
登録日2009-01-21
公開日2009-04-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Identification of an N-oxide pyridine GW4064 analog as a potent FXR agonist
Bioorg.Med.Chem.Lett., 19, 2009

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