1Y3I
| Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex | Descriptor: | GLYCEROL, Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, Kawai, S, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-11-25 | Release date: | 2005-01-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex Biochem.Biophys.Res.Commun., 327, 2005
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1Y3Q
| Structure of AlgQ1, alginate-binding protein | Descriptor: | AlgQ1, CALCIUM ION | Authors: | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-11-26 | Release date: | 2005-04-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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2ZA9
| Crystal Structure of Alginate lyase A1-II' N141C/N199C | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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3ANI
| Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae | Descriptor: | Putative uncharacterized protein gbs1889 | Authors: | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-09-02 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem., 286, 2011
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3AT7
| Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | Descriptor: | Alginate-binding flagellin | Authors: | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-12-27 | Release date: | 2011-02-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif. Biochem.Biophys.Res.Commun., 405, 2011
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3AFM
| Crystal structure of aldose reductase A1-R responsible for alginate metabolism | Descriptor: | Carbonyl reductase | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-03-10 | Release date: | 2010-08-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1 Biochim.Biophys.Acta, 1804, 2010
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3AMI
| The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 | Descriptor: | zinc peptidase | Authors: | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-08-20 | Release date: | 2011-02-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol., 407, 2011
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3ANJ
| Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae | Descriptor: | Putative uncharacterized protein gbs1889 | Authors: | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-09-02 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem., 286, 2011
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1Y3P
| Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide | Descriptor: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | Authors: | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-11-26 | Release date: | 2005-04-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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1Y3N
| Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide | Descriptor: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | Authors: | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-11-26 | Release date: | 2005-04-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
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1Y3H
| Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis | Descriptor: | Inorganic polyphosphate/ATP-NAD kinase | Authors: | Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, kawai, S, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-11-24 | Release date: | 2005-01-18 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
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2Z42
| Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2007-06-12 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1 To be published
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2ZBL
| Functional annotation of Salmonella enterica yihS-encoded protein | Descriptor: | Putative isomerase, beta-D-mannopyranose | Authors: | Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-24 | Release date: | 2008-02-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol., 377, 2008
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3AY2
| Crystal structure of Neisserial azurin | Descriptor: | GLYCEROL, Lipid modified azurin protein, SULFATE ION, ... | Authors: | Ochiai, A, Hashimoto, W, Yamada, T, Chakrabarty, A.M, Murata, K. | Deposit date: | 2011-04-24 | Release date: | 2012-05-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of Neisserial Azurin To be Published
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2ZUY
| Crystal structure of exotype rhamnogalacturonan lyase YesX | Descriptor: | CALCIUM ION, YesX protein | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2008-10-28 | Release date: | 2009-02-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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3AMJ
| The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1 | Descriptor: | ZINC ION, zinc peptidase active subunit, zinc peptidase inactive subunit | Authors: | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-08-20 | Release date: | 2011-02-09 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol., 407, 2011
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3AFN
| Crystal structure of aldose reductase A1-R complexed with NADP | Descriptor: | Carbonyl reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TERTIARY-BUTYL ALCOHOL | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2010-03-10 | Release date: | 2010-08-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1 Biochim.Biophys.Acta, 1804, 2010
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3A0O
| Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 | Descriptor: | CHLORIDE ION, Oligo alginate lyase | Authors: | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2009-03-23 | Release date: | 2010-03-31 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens J.Biol.Chem., 285, 2010
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5XS8
| Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc | Descriptor: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1 | Authors: | Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2017-06-12 | Release date: | 2018-01-17 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.952 Å) | Cite: | Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans. Sci Rep, 7, 2017
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7VEQ
| Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in an open conformation | Descriptor: | GLYCEROL, SPH1118 | Authors: | Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W. | Deposit date: | 2021-09-10 | Release date: | 2022-08-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.696 Å) | Cite: | Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation. Sci Rep, 12, 2022
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5Y4C
| Crystal structure of EfeO-like protein Algp7 in complex with a metal ion | Descriptor: | Alginate-binding protein, COPPER (II) ION, GLYCEROL | Authors: | Temtrirath, K, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2017-08-03 | Release date: | 2017-10-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.701 Å) | Cite: | Binding mode of metal ions to the bacterial iron import protein EfeO Biochem. Biophys. Res. Commun., 493, 2017
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7WGU
| Crystal structure of metal-binding protein EfeO from Escherichia coli | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Iron uptake system protein EfeO, ... | Authors: | Nakatsuji, S, Takase, R, Mikami, B, Hashimoto, W. | Deposit date: | 2021-12-29 | Release date: | 2022-12-14 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal structures of EfeB and EfeO in a bacterial siderophore-independent iron transport system Biochem.Biophys.Res.Commun., 594, 2022
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7VGK
| Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI | Descriptor: | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase | Authors: | Iwase, H, Oiki, S, Mikami, B, Takase, R, Hashimoto, W. | Deposit date: | 2021-09-16 | Release date: | 2022-10-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs J.Appl.Glyosci., 2023
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5Z6B
| Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO | Authors: | Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2018-01-22 | Release date: | 2019-01-23 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.582 Å) | Cite: | Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide To Be Published
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5Z6C
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