Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 620 results

7JLD
DownloadVisualize
BU of 7jld by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J22 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*GP*CP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*G)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-29
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.163 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JLA
DownloadVisualize
BU of 7jla by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J16 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*GP*TP*GP*AP*CP*GP*CP*CP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*G)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-29
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JLF
DownloadVisualize
BU of 7jlf by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J24 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*AP*GP*AP*CP*GP*TP*CP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*G)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-29
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.909 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JOJ
DownloadVisualize
BU of 7joj by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J28 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*TP*GP*AP*CP*GP*TP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*G)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-08-06
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.108 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JSC
DownloadVisualize
BU of 7jsc by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J31 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*AP*GP*AP*CP*GP*GP*CP*GP*AP*GP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*G)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-08-14
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JS1
DownloadVisualize
BU of 7js1 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J33 immobile Holliday junction with R3 symmetry
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*TP*GP*AP*CP*GP*AP*GP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*C)-3'), DNA (5'-D(P*AP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-08-13
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.152 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
3PI8
DownloadVisualize
BU of 3pi8 by Molmil
Site-specific Glycosylation of Hemoglobin Utilizing Oxime Ligation Chemistry as a Viable Alternative to PEGylation
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Bhatt, V.S, Styslinger, T.J, Zhang, N, Wang, P.G, Palmer, A.F.
Deposit date:2010-11-05
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:

4GIK
DownloadVisualize
BU of 4gik by Molmil
Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear R5P Adduct
Descriptor: MANGANESE (II) ION, Pseudouridine-5'-phosphate glycosidase, RIBOSE-5-PHOSPHATE
Authors:Huang, S, Mahanta, N, Begley, T.P, Ealick, S.E.
Deposit date:2012-08-08
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.187 Å)
Cite:Pseudouridine monophosphate glycosidase: a new glycosidase mechanism.
Biochemistry, 51, 2012
4J3N
DownloadVisualize
BU of 4j3n by Molmil
Human Topoisomerase Iibeta in complex with DNA
Descriptor: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), DNA topoisomerase 2-beta, ...
Authors:Wu, C.C, Li, T.K, Li, Y.C, Chan, N.L.
Deposit date:2013-02-06
Release date:2013-10-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:On the structural basis and design guidelines for type II topoisomerase-targeting anticancer drugs
Nucleic Acids Res., 41, 2013
4MYV
DownloadVisualize
BU of 4myv by Molmil
Free HSV-2 gD structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein D
Authors:Lu, G, Zhang, N, Qi, J, Li, Y, Chen, Z, Zheng, C, Yan, J, Gao, G.F.
Deposit date:2013-09-28
Release date:2014-10-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Crystal structure of herpes simplex virus 2 gD bound to nectin-1 reveals a conserved mode of receptor recognition.
J.Virol., 88, 2014
4G0V
DownloadVisualize
BU of 4g0v by Molmil
Human topoisomerase iibeta in complex with DNA and mitoxantrone
Descriptor: 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE, DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), ...
Authors:Wu, C.C, Li, T.K, Li, Y.C, Chan, N.L.
Deposit date:2012-07-10
Release date:2013-07-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.548 Å)
Cite:On the structural basis and design guidelines for type II topoisomerase-targeting anticancer drugs
Nucleic Acids Res., 41, 2013
4GIJ
DownloadVisualize
BU of 4gij by Molmil
Crystal Structure of Pseudouridine Monophosphate Glycosidase Complexed with Sulfate
Descriptor: MANGANESE (II) ION, Pseudouridine-5'-phosphate glycosidase, SULFATE ION
Authors:Huang, S, Mahanta, N, Begley, T.P, Ealick, S.E.
Deposit date:2012-08-08
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:Pseudouridine monophosphate glycosidase: a new glycosidase mechanism.
Biochemistry, 51, 2012
4GIM
DownloadVisualize
BU of 4gim by Molmil
Crystal Structure of Pseudouridine Monophosphate Glycosidase Complexed with Pseudouridine 5'-phosphate
Descriptor: MANGANESE (II) ION, PSEUDOURIDINE-5'-MONOPHOSPHATE, Pseudouridine-5'-phosphate glycosidase
Authors:Huang, S, Mahanta, N, Begley, T.P, Ealick, S.E.
Deposit date:2012-08-08
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Pseudouridine monophosphate glycosidase: a new glycosidase mechanism.
Biochemistry, 51, 2012
7JHA
DownloadVisualize
BU of 7jha by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J23 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-20
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.107 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JI7
DownloadVisualize
BU of 7ji7 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J33 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*TP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*CP*AP*TP*GP*TP*CP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-22
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.105 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JHV
DownloadVisualize
BU of 7jhv by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J36 immobile Holliday junction with R3 symmetry
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*CP*GP*TP*CP*TP*GP*C)-3'), DNA (5'-D(P*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-21
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.058 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JI6
DownloadVisualize
BU of 7ji6 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J34 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*AP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*GP*TP*TP*GP*TP*CP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-22
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.005 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JKE
DownloadVisualize
BU of 7jke by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J2 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-28
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.068 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JKD
DownloadVisualize
BU of 7jkd by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J1 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*GP*AP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-28
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.058 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JFW
DownloadVisualize
BU of 7jfw by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J10 immobile Holliday junction
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*TP*CP*TP*GP*C)-3'), DNA (5'-D(P*CP*GP*TP*CP*AP*CP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-17
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.012 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JHS
DownloadVisualize
BU of 7jhs by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J5 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*CP*GP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-21
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.096 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JI5
DownloadVisualize
BU of 7ji5 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J36 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*GP*CP*TP*GP*TP*CP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-22
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JH8
DownloadVisualize
BU of 7jh8 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J20 immobile Holliday junction
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*CP*GP*GP*TP*CP*TP*GP*C)-3'), DNA (5'-D(P*CP*GP*AP*GP*AP*CP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-20
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.087 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JIN
DownloadVisualize
BU of 7jin by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J24 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*GP*GP*TP*GP*TP*CP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-23
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.909 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
7JIP
DownloadVisualize
BU of 7jip by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J22 immobile Holliday junction with R3 symmetry
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*GP*GP*TP*GP*TP*CP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-23
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.163 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon