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PDB: 272 件
1UB4
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crystal structure of MazEF complex
分子名称: MazE protein, MazF protein
著者Kamada, K, Hanaoka, F, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-03-28
公開日2003-05-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the MazE/MazF Complex. Molecular Bases of Antidote-Toxin Recognition
Mol.Cell, 11, 2003
7LPE
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Cryo-EM structure of full-length TRPV1 with capsaicin at 48 degrees Celsius, in an open state, class 1
分子名称: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Transient receptor potential cation channel subfamily V member 1, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
7LPA
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Cryo-EM structure of full-length TRPV1 with capsaicin at 4 degrees Celsius
分子名称: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
7LPB
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Cryo-EM structure of full-length TRPV1 with capsaicin at 25 degrees Celsius
分子名称: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
7LP9
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BU of 7lp9 by Molmil
Cryo-EM structure of full-length TRPV1 at 4 degrees Celsius
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol, Phosphatidylinositol, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.63 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
7LPD
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Cryo-EM structure of full-length TRPV1 with capsaicin at 48 degrees Celsius, in an intermediate state, class 2
分子名称: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Transient receptor potential cation channel subfamily V member 1, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
7LPC
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Cryo-EM structure of full-length TRPV1 at 48 degrees Celsius
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol, Phosphatidylinositol, ...
著者Kwon, D.H, Zhang, F, Suo, Y, Lee, S.-Y.
登録日2021-02-11
公開日2021-07-28
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Heat-dependent opening of TRPV1 in the presence of capsaicin.
Nat.Struct.Mol.Biol., 28, 2021
1V33
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Crystal structure of DNA primase from Pyrococcus horikoshii
分子名称: DNA primase small subunit, PHOSPHATE ION, ZINC ION
著者Ito, N, Nureki, O, Shirouzu, M, Yokoyama, S, Hanaoka, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-25
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis.
Genes Cells, 8, 2003
1V34
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Crystal structure of Pyrococcus horikoshii DNA primase-UTP complex
分子名称: DNA primase small subunit, URIDINE 5'-TRIPHOSPHATE, ZINC ION
著者Ito, N, Nureki, O, Shirouzu, M, Yokoyama, S, Hanaoka, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-25
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis.
Genes Cells, 8, 2003
3SI8
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BU of 3si8 by Molmil
Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)
分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, ...
著者Biertumpfel, C, Zhao, Y, Kondo, Y, Ramon-Maiques, S, Gregory, M, Lee, J.Y, Masutani, C, Lehmann, A.R, Hanaoka, F, Yang, W.
登録日2011-06-17
公開日2011-08-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure and mechanism of human DNA polymerase eta.
Nature, 465, 2010
2D07
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BU of 2d07 by Molmil
Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
分子名称: G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3B
著者Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M.
登録日2005-07-26
公開日2006-06-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
J.Mol.Biol., 359, 2006
1WYW
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BU of 1wyw by Molmil
Crystal Structure of SUMO1-conjugated thymine DNA glycosylase
分子名称: CHLORIDE ION, G/T mismatch-specific thymine DNA glycosylase, MAGNESIUM ION, ...
著者Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M.
登録日2005-02-17
公開日2005-06-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of thymine DNA glycosylase conjugated to SUMO-1.
Nature, 435, 2005
7ELV
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BU of 7elv by Molmil
Structure of legume lectin domain from Methanocaldococcus jannaschii in apo form
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, GLYCEROL, ...
著者Suguna, K, Khan, F.
登録日2021-04-12
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of an L-type lectin domain from archaea.
Proteins, 91, 2023
1XFP
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BU of 1xfp by Molmil
Crystal structure of the CDR2 germline reversion mutant of cAb-Lys3 in complex with hen egg white lysozyme
分子名称: FORMIC ACID, Lysozyme C, heavy chain antibody
著者De Genst, E, Handelberg, F, Van Meirhaeghe, A, Vynck, S, Loris, R, Wyns, L, Muyldermans, S.
登録日2004-09-15
公開日2004-09-28
最終更新日2013-02-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Chemical Basis for the Affinity Maturation of a Camel Single Domain Antibody
J.Biol.Chem., 279, 2004
6IF8
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BU of 6if8 by Molmil
Aeromonas hydrophila MtaN-2 complexed with adenine
分子名称: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, ADENINE
著者Chen, J, Liu, W, Wang, L, Shang, F, Lan, J, Chen, Y, Xu, Y.
登録日2018-09-18
公開日2018-10-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Aeromonas hydrophila MtaN-2 complexed with adenine
To Be Published
6IFB
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BU of 6ifb by Molmil
Structure of rhamnose bound beta-trefoil lectin from Entamoeba histolytica
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, beta-L-rhamnopyranose, ...
著者Suguna, K, Khan, F.
登録日2018-09-19
公開日2019-09-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Crystal structures of a beta-trefoil lectin from Entamoeba histolytica in monomeric and a novel disulfide bond-mediated dimeric forms.
Glycobiology, 30, 2020
6K28
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Crystal structure of the 5-(Hydroxyethyl)-methylthiazole Kinase ThiM from Klebsiella pneumonia in complex with TZE
分子名称: 2-(4-METHYL-THIAZOL-5-YL)-ETHANOL, Hydroxyethylthiazole kinase, MAGNESIUM ION
著者Chen, Y, Wang, L, Shang, F, Lan, J, Liu, W, Xu, Y.
登録日2019-05-13
公開日2019-07-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Structural insight of the 5-(Hydroxyethyl)-methylthiazole kinase ThiM involving vitamin B1 biosynthetic pathway from the Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 518, 2019
6JYY
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Crystal structure of the 5-(Hydroxyethyl)-methylthiazole Kinase ThiM from Klebsiella pneumonia
分子名称: Hydroxyethylthiazole kinase
著者Chen, Y, Wang, L, Shang, F, Lan, J, Liu, W, Xu, Y.
登録日2019-04-29
公開日2019-06-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insight of the 5-(Hydroxyethyl)-methylthiazole kinase ThiM involving vitamin B1 biosynthetic pathway from the Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 518, 2019
6K63
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The crystal structure of cytidine deaminase from Klebsiella pneumoniae
分子名称: 1,4-DIETHYLENE DIOXIDE, Cytidine deaminase, ZINC ION
著者Liu, W, Shang, F, Lan, J, Chen, Y, Wang, L, Xu, Y.
登録日2019-06-01
公開日2019-07-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.073 Å)
主引用文献Biochemical and structural analysis of the Klebsiella pneumoniae cytidine deaminase CDA.
Biochem.Biophys.Res.Commun., 519, 2019
5Z72
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BU of 5z72 by Molmil
Crystal structure of CcpC regulatory domain in complex with citrate from Bacillus amyloliquefaciens
分子名称: CITRATE ANION, CcpC, SODIUM ION
著者Chen, J, Wang, L, Shang, F, Xu, Y.
登録日2018-01-26
公開日2018-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Mechanistic insights from the crystal structures of a catabolite control protein C on citrate-responsive mechanism
To Be Published
6K2Q
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Aeromonas hydrophila MtaN-2 complexed with adenine
分子名称: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, ADENINE
著者Chen, J, Liu, W, Wang, L, Shang, F, Lan, J, Chen, Y, Xu, Y.
登録日2019-05-15
公開日2019-05-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Aeromonas hydrophila Cytoplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase.
Biochemistry, 58, 2019
6IFA
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Structure of beta-trefoil lectin from Entamoeba histolytica
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, lectin
著者Suguna, K, Khan, F.
登録日2018-09-19
公開日2019-09-25
最終更新日2020-04-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of a beta-trefoil lectin from Entamoeba histolytica in monomeric and a novel disulphide bond-mediated dimeric forms.
Glycobiology, 2020
2E9X
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BU of 2e9x by Molmil
The crystal structure of human GINS core complex
分子名称: DNA replication complex GINS protein PSF1, DNA replication complex GINS protein PSF2, GINS complex subunit 3, ...
著者Kamada, K, Hanaoka, F.
登録日2007-01-27
公開日2007-04-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the human GINS complex and its assembly and functional interface in replication initiation
Nat.Struct.Mol.Biol., 14, 2007
1LP8
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BU of 1lp8 by Molmil
HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT
分子名称: DIANTHIN 30
著者Kurinov, I.V, Rajamohan, F, Uckun, F.M.
登録日2002-05-07
公開日2004-05-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献High resolution X-ray structure and potent anti-HIV activity of recombinant dianthin antiviral protein.
Arzneimittelforschung, 54, 2004
2A6S
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Crystal structure of YoeB under isopropanol condition
分子名称: ISOPROPYL ALCOHOL, Toxin yoeB
著者Kamada, K, Hanaoka, F.
登録日2005-07-04
公開日2005-08-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin
Mol.Cell, 19, 2005

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