Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52 results

1M06
DownloadVisualize
BU of 1m06 by Molmil
Structural Studies of Bacteriophage alpha3 Assembly, X-Ray Crystallography
Descriptor: 5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3', Capsid Protein, Major spike protein, ...
Authors:Bernal, R.A, Hafenstein, S, Olson, N.H, Bowman, V, Chipman, P.R, Baker, T.S, Fane, B.A, Rossmann, M.G.
Deposit date:2002-06-12
Release date:2002-12-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Studies of Bacteriophage alpha3 Assembly
J.Mol.Biol., 325, 2003
1M0F
DownloadVisualize
BU of 1m0f by Molmil
Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
Descriptor: Capsid Protein F, Major Spike Protein G, Scaffolding Protein B, ...
Authors:Bernal, R.A, Hafenstein, S, Olson, N.H, Bowman, V.D, Chipman, P.R, Baker, T.S, Fane, B.A, Rossmann, M.G.
Deposit date:2002-06-12
Release date:2002-12-25
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structural Studies of Bacteriophage alpha3 Assembly
J.Mol.Biol., 325, 2003
3EPC
DownloadVisualize
BU of 3epc by Molmil
CryoEM structure of poliovirus receptor bound to poliovirus type 1
Descriptor: MYRISTIC ACID, Poliovirus receptor, Protein VP1, ...
Authors:Zhang, P, Mueller, S, Morais, M.C, Bator, C.M, Bowman, V.D, Hafenstein, S, Wimmer, E, Rossmann, M.G.
Deposit date:2008-09-29
Release date:2008-11-11
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.
Proc.Natl.Acad.Sci.USA, 105, 2008
3EPF
DownloadVisualize
BU of 3epf by Molmil
CryoEM structure of poliovirus receptor bound to poliovirus type 2
Descriptor: 1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE, MYRISTIC ACID, Poliovirus receptor, ...
Authors:Zhang, P, Mueller, S, Morais, M.C, Bator, C.M, Bowman, V.D, Hafenstein, S, Wimmer, E, Rossmann, M.G.
Deposit date:2008-09-29
Release date:2008-11-11
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.
Proc.Natl.Acad.Sci.USA, 105, 2008
3EPD
DownloadVisualize
BU of 3epd by Molmil
CryoEM structure of poliovirus receptor bound to poliovirus type 3
Descriptor: MYRISTIC ACID, Poliovirus Type3 peptide, Poliovirus receptor, ...
Authors:Zhang, P, Mueller, S, Morais, M.C, Bator, C.M, Bowman, V.D, Hafenstein, S, Wimmer, E, Rossmann, M.G.
Deposit date:2008-09-29
Release date:2008-11-11
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.
Proc.Natl.Acad.Sci.USA, 105, 2008
4GMP
DownloadVisualize
BU of 4gmp by Molmil
Crystal structure of enterovirus 71 strain 1095 procapsid
Descriptor: capsid protein VP0, capsid protein VP1, capsid protein VP3
Authors:Yoder, J.D, Hafenstein, S.
Deposit date:2012-08-16
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structures of the procapsid and mature virion of enterovirus 71 strain 1095.
J.Virol., 87, 2013
2XGK
DownloadVisualize
BU of 2xgk by Molmil
Virus like particle of L172W mutant of Minute Virus of Mice - the immunosuppressive strain
Descriptor: COAT PROTEIN VP2
Authors:Plevka, P, Hafenstein, S, Tattersall, P, Cotmore, S, Farr, G, D'Abramo, A, Rossmann, M.G.
Deposit date:2010-06-04
Release date:2011-04-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of a Packaging-Defective Mutant of Minute Virus of Mice Indicates that the Genome is Packaged Via a Pore at a 5-Fold Axis.
J.Virol., 85, 2011
6BSP
DownloadVisualize
BU of 6bsp by Molmil
High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16
Descriptor: Major capsid protein L1, U4 Heavy chain, U4 Light chain
Authors:Guan, J, Bywaters, S.M, Brendle, S.A, Ashley, R.E, Makhov, A.M, Conway, J.F, Christenson, N.D, Hafenstein, S.
Deposit date:2017-12-04
Release date:2018-02-14
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitopes on Human Papillomavirus 16.
Viruses, 9, 2017
6DIZ
DownloadVisualize
BU of 6diz by Molmil
EV-A71 strain 11316 complexed with tryptophan dendrimer MADAL_0385
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Sun, L, Lee, H, Thibaut, H.J, Rivero-Buceta, E, Martinez-Gualda, B, Delang, L, Leyssen, P, Gago, F, San-Felix, A, Hafenstein, S, Mirabelli, C, Neyts, J.
Deposit date:2018-05-24
Release date:2019-04-24
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Viral engagement with host (co-)receptors blocked by a novel class of tryptophan dendrimers that targets the 5-fold-axis of the enterovirus-A71 capsid.
Plos Pathog., 15, 2019
6BT3
DownloadVisualize
BU of 6bt3 by Molmil
High-Resolution Structure Analysis of Antibody V5 Conformational Epitope on Human Papillomavirus 16
Descriptor: Major capsid protein L1, V5 Fab Heavy-chain, V5 Fab Light-chain
Authors:Guan, J, Bywaters, S.M, Brendle, S.A, Ashley, R.E, Makhov, A.M, Conway, J.F, Christensen, N.D, Hafenstein, S.
Deposit date:2017-12-05
Release date:2018-01-17
Last modified:2018-01-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitopes on Human Papillomavirus 16.
Viruses, 9, 2017
4GB3
DownloadVisualize
BU of 4gb3 by Molmil
Human coxsackievirus B3 strain RD coat protein
Descriptor: MYRISTIC ACID, PALMITIC ACID, coat protein 1, ...
Authors:Yoder, J.D, Hafenstein, S.
Deposit date:2012-07-26
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface.
J.Virol., 86, 2012
2X5I
DownloadVisualize
BU of 2x5i by Molmil
Crystal structure echovirus 7
Descriptor: LAURIC ACID, VP1, VP2, ...
Authors:Plevka, P, Hafenstein, S, Zhang, Y, Bowman, V.D, Chipman, P.R, Bator, C.M, Rossmann, M.G.
Deposit date:2010-02-08
Release date:2010-12-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Interaction of Decay-Accelerating Factor with Echovirus 7.
J.Virol., 84, 2010
3J93
DownloadVisualize
BU of 3j93 by Molmil
Fitting of Fab into the cryoEM density map of EV71 procapsid in complex with Fab22A12
Descriptor: neutralizing antibody 22A12, heavy chain, light chain
Authors:Shingler, K.L, Cifuente, J.O, Ashley, R.E, Makhov, A.M, Conway, J.F, Hafenstein, S.
Deposit date:2014-12-02
Release date:2014-12-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:The enterovirus 71 procapsid binds neutralizing antibodies and rescues virus infection in vitro.
J.Virol., 89, 2015
3J8Z
DownloadVisualize
BU of 3j8z by Molmil
Cryo-EM reconstruction of quasi-HPV16 complex with H16.1A Fab
Descriptor: H16.1A heavy chain, H16.1A light chain, L1
Authors:Guan, J, Hafenstein, S.
Deposit date:2014-11-20
Release date:2015-05-06
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization.
Virology, 483, 2015
3J6L
DownloadVisualize
BU of 3j6l by Molmil
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Descriptor: Coxsackievirus and adenovirus receptor, SULFATE ION
Authors:Organtini, L.J, Makhov, A.M, Conway, J.F, Hafenstein, S, Carson, S.D.
Deposit date:2014-03-19
Release date:2014-04-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Kinetic and structural analysis of coxsackievirus b3 receptor interactions and formation of the a-particle.
J.Virol., 88, 2014
3J6N
DownloadVisualize
BU of 3j6n by Molmil
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Descriptor: Coxsackie and adenovirus receptor
Authors:Organtini, L.J, Makhov, A.M, Conway, J.F, Hafenstein, S, Carson, S.D.
Deposit date:2014-03-19
Release date:2014-04-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Kinetic and structural analysis of coxsackievirus b3 receptor interactions and formation of the a-particle.
J.Virol., 88, 2014
3J8W
DownloadVisualize
BU of 3j8w by Molmil
Cryo-EM reconstruction of quasi-HPV16 complex with H263.A2 Fab
Descriptor: H263.A2 heavy chain, H263.A2 light chain, L1
Authors:Guan, J, Hafenstein, S.
Deposit date:2014-11-19
Release date:2015-05-06
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization.
Virology, 483, 2015
7KZF
DownloadVisualize
BU of 7kzf by Molmil
High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Descriptor: Major capsid protein L1
Authors:Hartmann, S.R, Goetschius, D.J, Hafenstein, S.
Deposit date:2020-12-10
Release date:2021-02-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility.
Sci Rep, 11, 2021
7JYI
DownloadVisualize
BU of 7jyi by Molmil
Subparticle Map of ZIKV MR-766
Descriptor: E Glycoprotein, M protein
Authors:Jose, J, Hafenstein, S.
Deposit date:2020-08-30
Release date:2020-09-16
Last modified:2020-10-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Identification of a pocket factor that is critical to Zika virus assembly.
Nat Commun, 11, 2020
3IYP
DownloadVisualize
BU of 3iyp by Molmil
The Interaction of Decay-accelerating Factor with Echovirus 7
Descriptor: Capsid protein, Complement decay-accelerating factor, LAURIC ACID, ...
Authors:Plevka, P, Hafenstein, S, Zhang, Y, Harris, K.G, Cifuente, J.O, Bowman, V.D, Chipman, P.R, Lin, F, Medof, D.E, Bator, C.M, Rossmann, M.G.
Deposit date:2010-04-07
Release date:2010-11-24
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Interaction of decay-accelerating factor with echovirus 7.
J.Virol., 84, 2010
3J7E
DownloadVisualize
BU of 3j7e by Molmil
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Descriptor: H16.V5 Fab heavy chain, H16.V5 Fab light chain
Authors:Lee, H, Brendle, S.A, Bywaters, S.M, Christensen, N.D, Hafenstein, S.
Deposit date:2014-06-23
Release date:2014-11-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:A cryo-electron microscopy study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment.
J.Virol., 89, 2015
3J3Z
DownloadVisualize
BU of 3j3z by Molmil
Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
Descriptor: MA28-7 neutralizing antibody heavy chain, MA28-7 neutralizing antibody light chain
Authors:Lee, H, Cifuente, J.O, Ashley, R.E, Conway, J.F, Makhov, A.M, Tano, Y, Shimizu, H, Nishimura, Y, Hafenstein, S.
Deposit date:2013-05-21
Release date:2013-08-28
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (23.4 Å)
Cite:A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
3J6M
DownloadVisualize
BU of 3j6m by Molmil
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Descriptor: Coxsackievirus and adenovirus receptor
Authors:Organtini, L.J, Makhov, A.M, Conway, J.F, Hafenstein, S, Carson, S.D.
Deposit date:2014-03-19
Release date:2014-04-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Kinetic and structural analysis of coxsackievirus b3 receptor interactions and formation of the a-particle.
J.Virol., 88, 2014
3J6O
DownloadVisualize
BU of 3j6o by Molmil
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Descriptor: Coxsackie and adenovirus receptor
Authors:Organtini, L.J, Makhov, A.M, Conway, J.F, Hafenstein, S, Carson, S.D.
Deposit date:2014-03-19
Release date:2014-04-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Kinetic and structural analysis of coxsackievirus b3 receptor interactions and formation of the a-particle.
J.Virol., 88, 2014
3J8V
DownloadVisualize
BU of 3j8v by Molmil
Cryo-EM reconstruction of quasi-HPV16 complex with H16.14J Fab
Descriptor: H16.14J heavy chain, H16.14J light chain, L1
Authors:Guan, J, Hafenstein, S.
Deposit date:2014-11-19
Release date:2015-05-06
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.9 Å)
Cite:Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization.
Virology, 483, 2015

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon