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PDB: 76 results

4FWY
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BU of 4fwy by Molmil
F33Y CuB myoglobin (F33Y L29H F43H sperm whale myoglobin) with copper bound
Descriptor: COPPER (II) ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gao, Y.-G, Robinson, H, Petrik, I.D, Miner, K.D, Lu, Y.
Deposit date:2012-07-02
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Designed Functional Metalloenzyme that Reduces O(2) to H(2) O with Over One Thousand Turnovers.
Angew.Chem.Int.Ed.Engl., 51, 2012
144D
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BU of 144d by Molmil
MINOR GROOVE BINDING OF SN6999 TO AN ALKYLATED DNA: MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-SN6999 COMPLEX
Descriptor: 1-METHYL-4-[4-[4-(4-(1-METHYLQUINOLINIUM)AMINO)BENZAMIDO]ANILINO]PYRIDINIUM, DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Gao, Y.-G, Sriram, M, Denny, W.A, Wang, A.H.-J.
Deposit date:1993-10-26
Release date:1995-05-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Minor groove binding of SN6999 to an alkylated DNA: molecular structure of d(CGC[e6G]AATTCGCG)-SN6999 complex.
Biochemistry, 32, 1993
1BNZ
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BU of 1bnz by Molmil
SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX
Descriptor: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3', DNA-BINDING PROTEIN 7A
Authors:Gao, Y.-G, Su, S.-Y, Robinson, H, Padmanabhan, S, Lim, L, Mccrary, B.S, Edmondos, S.P, Shrive, J.W, Wang, A.H.-J.
Deposit date:1998-07-31
Release date:1998-11-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.
Nat.Struct.Biol., 5, 1998
1D8X
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BU of 1d8x by Molmil
CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS
Descriptor: 5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*GP*G)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
Authors:Gao, Y.-G, Robinson, H, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-10-26
Release date:1999-11-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution.
Biochemistry, 38, 1999
4LYC
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BU of 4lyc by Molmil
Cd ions within a lysoyzme single crystal
Descriptor: CADMIUM ION, Lysozyme C
Authors:Wei, H, House, S, Wu, J, Zhang, J, Wang, Z, He, Y, Gao, Y.-G, Robinson, H, Li, W, Zuo, J.-M, Robertson, I.M, Lu, Y.
Deposit date:2013-07-30
Release date:2015-02-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Enhanced and tunable fluorescent quantum dots within a single crystal of protein
TO BE PUBLISHED
381D
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BU of 381d by Molmil
BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
Descriptor: 2'-BROMO-4'-EPIDAUNORUBICIN, DNA (5'-D(*TP*GP*(G49)P*CP*CP*G)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*G)-3')
Authors:Dutta, R, Gao, Y.-G, Priebe, W, Wang, A.H.-J.
Deposit date:1998-02-18
Release date:1998-07-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes.
Nucleic Acids Res., 26, 1998
1MNV
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BU of 1mnv by Molmil
Actinomycin D binding to ATGCTGCAT
Descriptor: 5'-D(*AP*TP*GP*CP*TP*GP*CP*AP*T)-3', ACTINOMYCIN D
Authors:Hou, M.-H, Robinson, H, Gao, Y.-G, Wang, A.H.-J.
Deposit date:2002-09-06
Release date:2002-11-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Actinomycin D Bound to the Ctg Triplet Repeat Sequences Linked to Neurological Diseases
Nucleic Acids Res., 30, 2002
4V7J
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BU of 4v7j by Molmil
Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E.
Deposit date:2009-11-02
Release date:2014-07-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Cell(Cambridge,Mass.), 139, 2009
1UCS
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BU of 1ucs by Molmil
Type III Antifreeze Protein RD1 from an Antarctic Eel Pout
Descriptor: Antifreeze peptide RD1
Authors:Ko, T.-P, Robinson, H, Gao, Y.-G, Cheng, C.-H.C, DeVries, A.L, Wang, A.H.-J.
Deposit date:2003-04-21
Release date:2003-05-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.62 Å)
Cite:The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-A resolution reveals structural microheterogeneity of protein and solvation.
Biophys.J., 84, 2003
4V7K
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BU of 4v7k by Molmil
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E.
Deposit date:2009-11-02
Release date:2014-07-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Cell(Cambridge,Mass.), 139, 2009
1I3W
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BU of 1i3w by Molmil
ACTINOMYCIN D BINDING TO CGATCGATCG
Descriptor: 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3', ACTINOMYCIN D
Authors:Robinson, H, Gao, Y.-G, Yang, X.-L, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:2001-02-17
Release date:2001-05-21
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg.
Biochemistry, 40, 2001
403D
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BU of 403d by Molmil
5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
Descriptor: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(IGU)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Bauer, C, Roberts, C, Switzer, C, Wang, A.H.-J.
Deposit date:1998-06-10
Release date:1998-07-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:2'-Deoxyisoguanosine adopts more than one tautomer to form base pairs with thymidine observed by high-resolution crystal structure analysis.
Biochemistry, 37, 1998
1GVP
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BU of 1gvp by Molmil
GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)
Descriptor: GENE V PROTEIN
Authors:Su, S, Gao, Y.-G, Zhang, H, Terwilliger, T.C, Wang, A.H.-J.
Deposit date:1997-02-26
Release date:1997-09-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Analyses of the stability and function of three surface mutants (R82C, K69H, and L32R) of the gene V protein from Ff phage by X-ray crystallography.
Protein Sci., 6, 1997
1GKH
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BU of 1gkh by Molmil
MUTANT K69H OF GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)
Descriptor: GENE V PROTEIN
Authors:Su, S, Gao, Y.-G, Zhang, H, Terwilliger, T.C, Wang, A.H.-J.
Deposit date:1997-03-04
Release date:1997-09-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Analyses of the stability and function of three surface mutants (R82C, K69H, and L32R) of the gene V protein from Ff phage by X-ray crystallography.
Protein Sci., 6, 1997
380D
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BU of 380d by Molmil
BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
Descriptor: 2'-BROMO-4'-EPIDAUNORUBICIN, DNA (5'-D(*CP*GP*(G49)P*(CBR)P*CP*G)-3')
Authors:Dutta, R, Gao, Y.-G, Priebe, W, Wang, A.H.-J.
Deposit date:1998-02-18
Release date:1998-07-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes.
Nucleic Acids Res., 26, 1998
4LYB
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BU of 4lyb by Molmil
CdS within a lysoyzme single crystal
Descriptor: CADMIUM ION, Lysozyme C
Authors:Wei, H, House, S, Wu, J, Zhang, J, Wang, Z, He, Y, Gao, Y.-G, Robinson, H, Li, W, Zuo, J.-M, Robertson, I.M, Lu, Y.
Deposit date:2013-07-30
Release date:2015-02-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Enhanced and tunable fluorescent quantum dots within a single crystal of protein
TO BE PUBLISHED
1DNO
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BU of 1dno by Molmil
A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNZ
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BU of 1dnz by Molmil
A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES
Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-17
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNT
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BU of 1dnt by Molmil
RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNX
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BU of 1dnx by Molmil
RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
5A9Z
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BU of 5a9z by Molmil
Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Kumar, V, Chen, Y, Ahmed, T, Tan, J, Ero, R, Bhushan, S, Gao, Y.-G.
Deposit date:2015-07-23
Release date:2015-10-14
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structure of Bipa in GTP Form Bound to the Ratcheted Ribosome.
Proc.Natl.Acad.Sci.USA, 112, 2015
1FDG
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BU of 1fdg by Molmil
BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX)
Descriptor: 1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE, COBALT (II) ION, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'), ...
Authors:Yang, X.-L, Robinson, H, Gao, Y.-G, Wang, A.H.-J.
Deposit date:2000-07-20
Release date:2000-08-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms.
Biochemistry, 39, 2000
1FD5
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BU of 1fd5 by Molmil
BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX)
Descriptor: COBALT (II) ION, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'), MACROCYCLIC-BIS-9-AMINO-ACRIDINE, ...
Authors:Yang, X.-L, Robinson, H, Gao, Y.-G, Wang, A.H.-J.
Deposit date:2000-07-19
Release date:2000-08-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms.
Biochemistry, 39, 2000
5AA0
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BU of 5aa0 by Molmil
Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ...
Authors:Kumar, V, Chen, Y, Ahmed, T, Tan, J, Ero, R, Bhushan, S, Gao, Y.-G.
Deposit date:2015-07-23
Release date:2015-10-14
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structure of Bipa in GTP Form Bound to the Ratcheted Ribosome.
Proc.Natl.Acad.Sci.USA, 112, 2015
5A9Y
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BU of 5a9y by Molmil
Structure of ppGpp BipA
Descriptor: GTP-BINDING PROTEIN, GUANOSINE-5',3'-TETRAPHOSPHATE
Authors:Kumar, V, Chen, Y, Ero, R, Li, Z, Gao, Y.-G.
Deposit date:2015-07-23
Release date:2015-08-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structure of Bipa in GTP Form Bound to the Ratcheted Ribosome.
Proc.Natl.Acad.Sci.USA, 112, 2015

227111

数据于2024-11-06公开中

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