2ZZ7
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3W4S
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3WHB
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3WHC
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3WQP
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![BU of 3wqp by Molmil](/molmil-images/mine/3wqp) | Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis | Descriptor: | 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K. | Deposit date: | 2014-01-29 | Release date: | 2015-02-04 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature to be published
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7E4L
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3KDO
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![BU of 3kdo by Molmil](/molmil-images/mine/3kdo) | Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase | Authors: | Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-10-23 | Release date: | 2010-10-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile J.Biol.Chem., 285, 2010
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3KDN
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![BU of 3kdn by Molmil](/molmil-images/mine/3kdn) | Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase | Authors: | Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-10-23 | Release date: | 2010-10-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile J.Biol.Chem., 285, 2010
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4XF6
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![BU of 4xf6 by Molmil](/molmil-images/mine/4xf6) | myo-inositol 3-kinase bound with its products (ADP and 1D-myo-inositol 3-phosphate) | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2014-12-26 | Release date: | 2015-06-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation Biochemistry, 54, 2015
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4XF7
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![BU of 4xf7 by Molmil](/molmil-images/mine/4xf7) | myo-inositol 3-kinase bound with its substrates (AMPPCP and myo-inositol) | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Carbohydrate/pyrimidine kinase, PfkB family, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2014-12-26 | Release date: | 2015-06-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation Biochemistry, 54, 2015
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1WMF
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![BU of 1wmf by Molmil](/molmil-images/mine/1wmf) | Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom) | Descriptor: | 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ... | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K. | Deposit date: | 2004-07-08 | Release date: | 2004-09-14 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain J.Biol.Chem., 279, 2004
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1WME
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![BU of 1wme by Molmil](/molmil-images/mine/1wme) | Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.50 angstrom, 293 K) | Descriptor: | CALCIUM ION, protease | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K. | Deposit date: | 2004-07-08 | Release date: | 2004-09-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain J.Biol.Chem., 279, 2004
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1WMD
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![BU of 1wmd by Molmil](/molmil-images/mine/1wmd) | Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K) | Descriptor: | 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ... | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K. | Deposit date: | 2004-07-08 | Release date: | 2004-09-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain J.Biol.Chem., 279, 2004
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1UD6
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![BU of 1ud6 by Molmil](/molmil-images/mine/1ud6) | Crystal structure of AmyK38 with potassium ion | Descriptor: | POTASSIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD3
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![BU of 1ud3 by Molmil](/molmil-images/mine/1ud3) | Crystal structure of AmyK38 N289H mutant | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD8
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![BU of 1ud8 by Molmil](/molmil-images/mine/1ud8) | Crystal structure of AmyK38 with lithium ion | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.88 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD5
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![BU of 1ud5 by Molmil](/molmil-images/mine/1ud5) | Crystal structure of AmyK38 with rubidium ion | Descriptor: | RUBIDIUM ION, SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD4
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![BU of 1ud4 by Molmil](/molmil-images/mine/1ud4) | Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution) | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD2
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![BU of 1ud2 by Molmil](/molmil-images/mine/1ud2) | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) | Descriptor: | GLYCEROL, SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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5X0J
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![BU of 5x0j by Molmil](/molmil-images/mine/5x0j) | Free serine kinase (E30Q mutant) in complex with phosphoserine and AMP | Descriptor: | ADENOSINE MONOPHOSPHATE, Free serine kinase, MAGNESIUM ION, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-01-20 | Release date: | 2017-04-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol., 12, 2017
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5X0F
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5X0K
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5YSQ
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![BU of 5ysq by Molmil](/molmil-images/mine/5ysq) | Sulfate-complex structure of a pyrophosphate-dependent kinase in the ribokinase family provides insight into the donor-binding mode | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, SULFATE ION, TM0415 | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-11-14 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants. Nat Commun, 9, 2018
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5YSP
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![BU of 5ysp by Molmil](/molmil-images/mine/5ysp) | Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, MAGNESIUM ION, METHYLENEDIPHOSPHONIC ACID, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-11-14 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants. Nat Commun, 9, 2018
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5X0G
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![BU of 5x0g by Molmil](/molmil-images/mine/5x0g) | Free serine kinase (E30A mutant) in complex with ADP | Descriptor: | 2-hydroxy-3-[4-(2-hydroxy-3-sulfopropyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-01-20 | Release date: | 2017-04-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol., 12, 2017
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