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PDB: 61 件
2ZZ7
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Orotidine Monophosphate Decarboxylase K72A mutant complexed with BMP (produced from 6-Iodo-UMP)
分子名称: 6-HYDROXYURIDINE-5'-PHOSPHATE, GLYCEROL, Orotidine 5'-phosphate decarboxylase
著者Fujihashi, M, Pai, E.F.
登録日2009-02-05
公開日2009-03-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
3W4S
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BU of 3w4s by Molmil
Myo-inositol kinase from Thermococcus kodakarensis
分子名称: Carbohydrate/pyrimidine kinase, PfkB family, IODIDE ION
著者Fujihashi, M, Miyamoto, Y, Miki, K.
登録日2013-01-10
公開日2017-02-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity.
J.Biol.Chem., 288, 2013
3WHB
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Crystal structure of FadR from Bacillus subtilis, a transcriptional regulator involved in the regulation of fatty acid degradation
分子名称: DODECYL-COA, Fatty acid metabolism regulator protein
著者Fujihashi, M, Nakatani, T, Miki, K.
登録日2013-08-23
公開日2014-03-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
3WHC
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Crystal structure of a transcriptional regulator FadR from Bacillus subtilis in complex with stearoyl-CoA
分子名称: Fatty acid metabolism regulator protein, STEAROYL-COENZYME A
著者Fujihashi, M, Nakatani, T, Miki, K.
登録日2013-08-23
公開日2014-03-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
3WQP
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BU of 3wqp by Molmil
Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
分子名称: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ...
著者Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K.
登録日2014-01-29
公開日2015-02-04
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature
to be published
7E4L
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Conversion of pyrophosphate-dependent myo-inositol-1 kinase into myo-inositol-3 kinase by N78L/S89L mutation
分子名称: MAGNESIUM ION, METHYLENEDIPHOSPHONIC ACID, PfkB domain-containing protein
著者Tashiro, R, Miki, K, Fujihashi, M.
登録日2021-02-14
公開日2021-05-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Altering the Phosphorylation Position of Pyrophosphate-Dependent myo -Inositol-1-Kinase Based on Its Crystal Structure.
Acs Chem.Biol., 16, 2021
3KDO
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Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
4XF6
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myo-inositol 3-kinase bound with its products (ADP and 1D-myo-inositol 3-phosphate)
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2014-12-26
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
4XF7
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myo-inositol 3-kinase bound with its substrates (AMPPCP and myo-inositol)
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Carbohydrate/pyrimidine kinase, PfkB family, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2014-12-26
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
1WMF
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Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom)
分子名称: 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ...
著者Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
登録日2004-07-08
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1WME
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BU of 1wme by Molmil
Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.50 angstrom, 293 K)
分子名称: CALCIUM ION, protease
著者Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
登録日2004-07-08
公開日2004-09-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1WMD
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Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)
分子名称: 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ...
著者Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
登録日2004-07-08
公開日2004-09-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1UD6
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Crystal structure of AmyK38 with potassium ion
分子名称: POTASSIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD3
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Crystal structure of AmyK38 N289H mutant
分子名称: SODIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD8
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Crystal structure of AmyK38 with lithium ion
分子名称: SODIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD5
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Crystal structure of AmyK38 with rubidium ion
分子名称: RUBIDIUM ION, SODIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD4
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Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution)
分子名称: SODIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD2
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BU of 1ud2 by Molmil
Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38)
分子名称: GLYCEROL, SODIUM ION, amylase
著者Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
登録日2003-04-28
公開日2003-07-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
5X0J
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BU of 5x0j by Molmil
Free serine kinase (E30Q mutant) in complex with phosphoserine and AMP
分子名称: ADENOSINE MONOPHOSPHATE, Free serine kinase, MAGNESIUM ION, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-01-20
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0F
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Free serine kinase (E30A mutant) in complex with AMP
分子名称: ADENOSINE MONOPHOSPHATE, Free serine kinase
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-01-20
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0K
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Free serine kinase (E30Q mutant) in complex with AMP
分子名称: ADENOSINE MONOPHOSPHATE, Free serine kinase
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-01-20
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5YSQ
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Sulfate-complex structure of a pyrophosphate-dependent kinase in the ribokinase family provides insight into the donor-binding mode
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, SULFATE ION, TM0415
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-11-14
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants.
Nat Commun, 9, 2018
5YSP
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Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, MAGNESIUM ION, METHYLENEDIPHOSPHONIC ACID, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-11-14
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants.
Nat Commun, 9, 2018
5X0G
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Free serine kinase (E30A mutant) in complex with ADP
分子名称: 2-hydroxy-3-[4-(2-hydroxy-3-sulfopropyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2017-01-20
公開日2017-04-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017

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